https://launchpad.net/ubuntu/+source/lammps/0~20181211.gitad1b1897d+dfsg1-2/+build/16615695 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-012 4.4.0-145-generic #171-Ubuntu SMP Tue Mar 26 12:45:17 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_169 python-lpbuildd_169 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 11 Apr 09:06:37 ntpdate[1870]: adjust time server 10.211.37.1 offset -0.041030 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16615695 --image-type chroot /home/buildd/filecache-default/a8e076447bc9c859868a26138221e631724b6c90 Creating target for build PACKAGEBUILD-16615695 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16615695 Starting target for build PACKAGEBUILD-16615695 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16615695 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16615695 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16615695 Updating target for build PACKAGEBUILD-16615695 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [256 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [66.2 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [66.2 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [959 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8791 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5260 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [22.9 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [15.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [88.1 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [57.7 kB] Fetched 16.2 MB in 8s (2116 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libreadline7 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: gcc-9-base libreadline8 The following packages will be upgraded: adduser apt base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libjson-c3 libkmod2 liblz4-1 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.28 pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux xz-utils zlib1g 127 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 63.8 MB of archives. After this operation, 6874 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf debianutils armhf 4.8.6.1 [84.2 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf bash armhf 5.0-3ubuntu1 [572 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf bsdutils armhf 1:2.33.1-0.1ubuntu2 [58.1 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf coreutils armhf 8.30-1ubuntu1 [1126 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf lsb-base all 10.2019031300ubuntu1 [12.5 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf tar armhf 1.30+dfsg-5 [219 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf dpkg armhf 1.19.6ubuntu1 [1085 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libc6-dev armhf 2.29-0ubuntu2 [1911 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libc-dev-bin armhf 2.29-0ubuntu2 [59.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 5.0.0-10.11 [1034 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libc6 armhf 2.29-0ubuntu2 [2131 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libc-bin armhf 2.29-0ubuntu2 [459 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf gcc-9-base armhf 9-20190402-1ubuntu1 [16.9 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libgcc1 armhf 1:9-20190402-1ubuntu1 [37.4 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libperl5.28 armhf 5.28.1-6 [3163 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf perl armhf 5.28.1-6 [204 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf perl-base armhf 5.28.1-6 [1398 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.5 [590 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm6 armhf 1.18.1-4 [24.4 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm-compat4 armhf 1.18.1-4 [5788 B] Get:22 http://ftpmaster.internal/ubuntu disco/main armhf zlib1g armhf 1:1.2.11.dfsg-1ubuntu2 [48.3 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf debconf all 1.5.71 [122 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf dash armhf 0.5.10.2-4ubuntu1 [78.2 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf diffutils armhf 1:3.7-2 [180 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf findutils armhf 4.6.0+git+20190209-2 [307 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf grep armhf 3.3-1 [138 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf gzip armhf 1.9-3 [89.8 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libsmartcols1 armhf 2.33.1-0.1ubuntu2 [80.7 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libuuid1 armhf 2.33.1-0.1ubuntu2 [20.2 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf libblkid1 armhf 2.33.1-0.1ubuntu2 [119 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libfdisk1 armhf 2.33.1-0.1ubuntu2 [159 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libmount1 armhf 2.33.1-0.1ubuntu2 [130 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf libncurses6 armhf 6.1+20181013-2ubuntu2 [79.0 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf libtinfo6 armhf 6.1+20181013-2ubuntu2 [70.7 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libncursesw6 armhf 6.1+20181013-2ubuntu2 [105 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf fdisk armhf 2.33.1-0.1ubuntu2 [106 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf login armhf 1:4.5-1.1ubuntu2 [261 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf util-linux armhf 2.33.1-0.1ubuntu2 [925 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf ncurses-bin armhf 6.1+20181013-2ubuntu2 [156 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf sed armhf 4.7-1 [181 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libdebconfclient0 armhf 0.247ubuntu1 [5900 B] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf base-passwd armhf 3.5.46 [45.9 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf init-system-helpers all 1.56+nmu1 [38.2 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf ncurses-base all 6.1+20181013-2ubuntu2 [17.9 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main armhf libnettle6 armhf 3.4.1-1 [123 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main armhf libhogweed4 armhf 3.4.1-1 [129 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main armhf libp11-kit0 armhf 0.23.15-2 [163 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf libunistring2 armhf 0.9.10-1ubuntu2 [357 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf libgnutls30 armhf 3.6.5-2ubuntu1 [700 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf liblz4-1 armhf 1.8.3-1ubuntu1 [66.6 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf liblzma5 armhf 5.2.4-1 [84.6 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++6 armhf 9-20190402-1ubuntu1 [451 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main armhf libudev1 armhf 240-6ubuntu4 [56.5 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main armhf libzstd1 armhf 1.3.8+dfsg-3 [195 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main armhf libapt-pkg5.0 armhf 1.8.0 [738 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main armhf libpam0g armhf 1.3.1-5ubuntu1 [50.5 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-2 [7016 B] Get:59 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-2 [72.7 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu1 [33.1 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main armhf libpam-modules armhf 1.3.1-5ubuntu1 [230 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main armhf passwd armhf 1:4.5-1.1ubuntu2 [768 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main armhf adduser all 3.118ubuntu1 [163 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main armhf libgpg-error0 armhf 1.35-1 [49.3 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main armhf gpgv armhf 2.2.12-1ubuntu3 [167 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main armhf apt armhf 1.8.0 [1159 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main armhf systemd-sysv armhf 240-6ubuntu4 [9384 B] Get:68 http://ftpmaster.internal/ubuntu disco/main armhf libacl1 armhf 2.2.53-4 [15.8 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main armhf libapparmor1 armhf 2.13.2-9ubuntu5 [29.6 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main armhf libcap2 armhf 1:2.25-2 [12.1 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main armhf libargon2-1 armhf 0~20171227-0.2 [20.0 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main armhf libjson-c3 armhf 0.12.1+ds-2 [20.2 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main armhf libssl1.1 armhf 1.1.1b-1ubuntu2 [1064 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main armhf libcryptsetup12 armhf 2:2.1.0-1ubuntu1 [130 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main armhf libidn11 armhf 1.33-2.2ubuntu2 [43.1 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main armhf libkmod2 armhf 25-1ubuntu3 [35.7 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main armhf mount armhf 2.33.1-0.1ubuntu2 [105 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main armhf systemd armhf 240-6ubuntu4 [3147 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main armhf libsystemd0 armhf 240-6ubuntu4 [219 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main armhf libext2fs2 armhf 1.44.6-1 [146 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main armhf e2fsprogs armhf 1.44.6-1 [493 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main armhf init armhf 1.56+nmu1 [6080 B] Get:83 http://ftpmaster.internal/ubuntu disco/main armhf libattr1 armhf 1:2.4.48-4 [11.3 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main armhf libcap-ng0 armhf 0.7.9-2 [9656 B] Get:85 http://ftpmaster.internal/ubuntu disco/main armhf libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main armhf libpcre3 armhf 2:8.39-12 [207 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main armhf libcom-err2 armhf 1.44.6-1 [8712 B] Get:88 http://ftpmaster.internal/ubuntu disco/main armhf libprocps7 armhf 2:3.3.15-2ubuntu2 [29.8 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main armhf libss2 armhf 1.44.6-1 [9332 B] Get:90 http://ftpmaster.internal/ubuntu disco/main armhf procps armhf 2:3.3.15-2ubuntu2 [219 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main armhf openssl armhf 1.1.1b-1ubuntu2 [593 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main armhf ca-certificates all 20190110 [146 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main armhf readline-common all 8.0-1 [53.4 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main armhf libreadline8 armhf 8.0-1 [108 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main armhf libsqlite3-0 armhf 3.27.2-2 [453 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2019a-1 [187 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main armhf xz-utils armhf 5.2.4-1 [80.6 kB] Get:98 http://ftpmaster.internal/ubuntu disco/main armhf libpng16-16 armhf 1.6.36-6 [162 kB] Get:99 http://ftpmaster.internal/ubuntu disco-proposed/main armhf multiarch-support armhf 2.29-0ubuntu2 [6912 B] Get:100 http://ftpmaster.internal/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.32-7ubuntu4 [2164 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main armhf libbinutils armhf 2.32-7ubuntu4 [301 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main armhf binutils armhf 2.32-7ubuntu4 [3344 B] Get:103 http://ftpmaster.internal/ubuntu disco/main armhf binutils-common armhf 2.32-7ubuntu4 [200 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main armhf libubsan1 armhf 9-20190402-1ubuntu1 [118 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main armhf libgomp1 armhf 9-20190402-1ubuntu1 [77.4 kB] Get:106 http://ftpmaster.internal/ubuntu disco/main armhf libatomic1 armhf 9-20190402-1ubuntu1 [7076 B] Get:107 http://ftpmaster.internal/ubuntu disco/main armhf libasan5 armhf 9-20190402-1ubuntu1 [386 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main armhf g++-8 armhf 8.3.0-6ubuntu1 [7796 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8 armhf 8.3.0-6ubuntu1 [7579 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++-8-dev armhf 8.3.0-6ubuntu1 [1608 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main armhf libgcc-8-dev armhf 8.3.0-6ubuntu1 [628 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main armhf libcc1-0 armhf 9-20190402-1ubuntu1 [41.6 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main armhf cpp-8 armhf 8.3.0-6ubuntu1 [6809 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8-base armhf 8.3.0-6ubuntu1 [18.7 kB] Get:115 http://ftpmaster.internal/ubuntu disco/main armhf libmpfr6 armhf 4.0.2-1 [196 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main armhf g++ armhf 4:8.3.0-1ubuntu3 [1604 B] Get:117 http://ftpmaster.internal/ubuntu disco/main armhf gcc armhf 4:8.3.0-1ubuntu3 [5228 B] Get:118 http://ftpmaster.internal/ubuntu disco/main armhf cpp armhf 4:8.3.0-1ubuntu3 [27.6 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main armhf dpkg-dev all 1.19.6ubuntu1 [675 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main armhf libdpkg-perl all 1.19.6ubuntu1 [230 kB] Get:121 http://ftpmaster.internal/ubuntu disco/main armhf build-essential armhf 12.6ubuntu1 [4664 B] Get:122 http://ftpmaster.internal/ubuntu disco/main armhf e2fslibs armhf 1.44.6-1 [2700 B] Get:123 http://ftpmaster.internal/ubuntu disco/main armhf libassuan0 armhf 2.5.2-1 [28.7 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main armhf gpg armhf 2.2.12-1ubuntu3 [415 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main armhf gpgconf armhf 2.2.12-1ubuntu3 [105 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main armhf gpg-agent armhf 2.2.12-1ubuntu3 [190 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main armhf libcomerr2 armhf 1.44.6-1 [2692 B] Get:128 http://ftpmaster.internal/ubuntu disco/main armhf optipng armhf 0.7.7-1 [81.1 kB] Get:129 http://ftpmaster.internal/ubuntu disco/main armhf pkgbinarymangler all 144 [55.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.8 MB in 3s (24.9 MB/s) (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6.1_armhf.deb ... Unpacking debianutils (4.8.6.1) over (4.8.6) ... Setting up debianutils (4.8.6.1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../bash_5.0-3ubuntu1_armhf.deb ... Unpacking bash (5.0-3ubuntu1) over (4.4.18-2ubuntu3) ... Setting up bash (5.0-3ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.33.1-0.1ubuntu2_armhf.deb ... Unpacking bsdutils (1:2.33.1-0.1ubuntu2) over (1:2.32-0.1ubuntu2) ... Setting up bsdutils (1:2.33.1-0.1ubuntu2) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-1ubuntu1_armhf.deb ... Unpacking coreutils (8.30-1ubuntu1) over (8.28-1ubuntu2) ... Setting up coreutils (8.30-1ubuntu1) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-16615695 armhf disco-proposed -c chroot:build-PACKAGEBUILD-16615695 --arch=armhf --dist=disco-proposed --nolog 'lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc' Initiating build PACKAGEBUILD-16615695 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-145-generic #171-Ubuntu SMP Tue Mar 26 12:45:17 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-012.buildd +==============================================================================+ | lammps 0~20181211.gitad1b1897d+dfsg1-2 (armhf) 11 Apr 2019 09:07 | +==============================================================================+ Package: lammps Version: 0~20181211.gitad1b1897d+dfsg1-2 Source Version: 0~20181211.gitad1b1897d+dfsg1-2 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/lammps-RYkBTZ/lammps-0~20181211.gitad1b1897d+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/lammps-RYkBTZ' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16615695/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-vMgXUh/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-vMgXUh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vMgXUh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-vMgXUh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vMgXUh/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-vMgXUh/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (131 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-vMgXUh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12526 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, gfortran | fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev Filtered Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, gfortran | fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev dpkg-deb: building package 'sbuild-build-depends-lammps-dummy' in '/<>/resolver-GOwQtp/apt_archive/sbuild-build-depends-lammps-dummy.deb'. Ign:1 copy:/<>/resolver-GOwQtp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GOwQtp/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-GOwQtp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GOwQtp/apt_archive ./ Sources [315 B] Get:5 copy:/<>/resolver-GOwQtp/apt_archive ./ Packages [638 B] Fetched 3072 B in 0s (149 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install lammps build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data cython debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext gettext-base gfortran gfortran-8 groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes libaec-dev libaec0 libaom0 libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56 libblas-dev libblas3 libbluray2 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcairo2 libcap2-bin libcharls-dev libcharls2 libchromaprint1 libcodec2-0.8.1 libcroco3 libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1 libgdal-dev libgdal20 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.7.1 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev libgfortran5 libgif-dev libgif7 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgme0 libgraphite2-3 libgsm1 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhcrypto4-heimdal libhdf4-0-alt libhdf4-alt-dev libhdf5-103 libhdf5-cpp-103 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-103 libhdf5-openmpi-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu63 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm8 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libminizip-dev libminizip1 libmp3lame0 libmpg123-0 libmtdev1 libmysqlclient-dev libmysqlclient20 libnetcdf-c++4 libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev libogg-dev libogg0 libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3 libopenmpt0 libopus0 liborc-0.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpmix2 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler85 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqhull-dev libqhull-r7 libqhull7 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5sensors5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 librhash0 libroken18-heimdal librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libshine3 libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0 libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-4 libssh-gcrypt-4 libsuperlu-dev libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev libsymspg1 libsz2 libtcl8.6 libthai-data libthai0 libtheora-dev libtheora0 libtiff-dev libtiff5 libtiffxx5 libtk8.6 libtool libtwolame0 libuchardet0 liburiparser-dev liburiparser1 libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2 libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1 libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libx264-155 libx265-165 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1 libzstd-dev libzvbi-common libzvbi0 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1 ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin openmpi-common openssh-client pkg-config po-debconf proj-data python python-asn1crypto python-attr python-autobahn python-automat python-cbor python-cffi-backend python-concurrent.futures python-configparser python-constantly python-cryptography python-enum34 python-future python-hyperlink python-idna python-incremental python-ipaddress python-lz4 python-minimal python-mpi4py python-nacl python-openssl python-pil python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode python-service-identity python-six python-snappy python-trie python-trollius python-twisted python-twisted-bin python-twisted-core python-txaio python-u-msgpack python-ubjson python-vtk6 python-wsaccel python-zope.interface python2 python2-minimal python2.7 python2.7-minimal shared-mime-info tcl tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk6 x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff isoquery lrzip libitpp-dev liblapack-doc libbluray-bdj libboost-doc libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev cups-common libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libfftw3-doc libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin krb5-doc krb5-user libvisual-0.4-plugins gstreamer1.0-tools libhdf4-doc hdf4-tools libhdf5-doc libhwloc-contrib-plugins libice-doc icu-doc liblcms2-utils libtool-doc liblzma-doc netcdf-bin netcdf-doc libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin openmpi-doc opus-tools pciutils postgresql-doc-11 proj-bin qt5-image-formats-plugins qtwayland5 qt5-qmltooling-plugins librsvg2-bin lm-sensors libsm-doc speex sqlite3-doc libsuperlu-doc gcj-jdk vtk6-doc vtk6-examples java-virtual-machine libx11-doc libxcb-doc libxerces-c-doc libxext-doc libxt-doc m4-doc apparmor less www-browser opencl-icd libpoclu-dev keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk python-attr-doc python-cryptography-doc python-cryptography-vectors python-enum34-doc python-future-doc python-numpy python-nacl-doc python-openssl-doc python-openssl-dbg python-pil-doc python-pil-dbg python-setuptools python-trie-doc python-twisted-bin-dbg python-gtk2 python-glade2 python-pampy python-qt3 python-serial python-wxgtk3.0 python-txaio-doc mayavi2 python2-doc python2.7-doc binfmt-support tcl-doc tcl-tclreadline tcl8.6-doc tk-doc tk8.6-doc Recommended packages: python-dev curl | wget | lynx libaacs0 libpam-cap dbus libarchive-cpio-perl freetype2-doc proj-bin libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs gstreamer1.0-plugins-base javascript-common krb5-locales libcoarrays-openmpi-dev libpng-tools poppler-data publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme geoclue-2.0 librsvg2-common libsasl2-modules va-driver-all | va-driver vdpau-driver-all | vdpau-driver libwacom-bin xauth libmail-sendmail-perl python-click python-olefile xterm | x-terminal-emulator The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data cython debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext gettext-base gfortran gfortran-8 groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes libaec-dev libaec0 libaom0 libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56 libblas-dev libblas3 libbluray2 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcairo2 libcap2-bin libcharls-dev libcharls2 libchromaprint1 libcodec2-0.8.1 libcroco3 libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1 libgdal-dev libgdal20 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.7.1 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev libgfortran5 libgif-dev libgif7 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgme0 libgraphite2-3 libgsm1 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhcrypto4-heimdal libhdf4-0-alt libhdf4-alt-dev libhdf5-103 libhdf5-cpp-103 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-103 libhdf5-openmpi-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu63 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm8 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libminizip-dev libminizip1 libmp3lame0 libmpg123-0 libmtdev1 libmysqlclient-dev libmysqlclient20 libnetcdf-c++4 libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev libogg-dev libogg0 libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3 libopenmpt0 libopus0 liborc-0.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpmix2 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler85 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqhull-dev libqhull-r7 libqhull7 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5sensors5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 librhash0 libroken18-heimdal librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libshine3 libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0 libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-4 libssh-gcrypt-4 libsuperlu-dev libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev libsymspg1 libsz2 libtcl8.6 libthai-data libthai0 libtheora-dev libtheora0 libtiff-dev libtiff5 libtiffxx5 libtk8.6 libtool libtwolame0 libuchardet0 liburiparser-dev liburiparser1 libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2 libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1 libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libx264-155 libx265-165 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1 libzstd-dev libzvbi-common libzvbi0 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1 ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin openmpi-common openssh-client pkg-config po-debconf proj-data python python-asn1crypto python-attr python-autobahn python-automat python-cbor python-cffi-backend python-concurrent.futures python-configparser python-constantly python-cryptography python-enum34 python-future python-hyperlink python-idna python-incremental python-ipaddress python-lz4 python-minimal python-mpi4py python-nacl python-openssl python-pil python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode python-service-identity python-six python-snappy python-trie python-trollius python-twisted python-twisted-bin python-twisted-core python-txaio python-u-msgpack python-ubjson python-vtk6 python-wsaccel python-zope.interface python2 python2-minimal python2.7 python2.7-minimal sbuild-build-depends-lammps-dummy shared-mime-info tcl tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk6 x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 517 newly installed, 0 to remove and 0 not upgraded. Need to get 261 MB of archives. After this operation, 1147 MB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu disco/main armhf libwayland-client0 armhf 1.16.0-1ubuntu2 [18.7 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf libx11-xcb1 armhf 2:1.6.7-1 [9104 B] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri2-0 armhf 1.13.1-2 [6676 B] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri3-0 armhf 1.13.1-2 [6288 B] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-present0 armhf 1.13.1-2 [5424 B] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-sync1 armhf 1.13.1-2 [8240 B] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xfixes0 armhf 1.13.1-2 [9004 B] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libxshmfence1 armhf 1.3-1 [4792 B] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libegl-mesa0 armhf 19.0.1-1ubuntu2 [76.2 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf libegl1 armhf 1.1.1-0ubuntu1 [26.3 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libgles2 armhf 1.1.1-0ubuntu1 [17.9 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-0 armhf 2.60.0-1 [1078 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf libcap2-bin armhf 1:2.25-2 [21.1 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf libgstreamer1.0-0 armhf 1.15.2-1 [808 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf liborc-0.4-0 armhf 1:0.4.28-3.1 [117 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf iso-codes all 4.2-1 [2659 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf libgstreamer-plugins-base1.0-0 armhf 1.15.2-1 [652 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf libhyphen0 armhf 2.8.8-7 [24.4 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf libicu63 armhf 63.1-6 [7992 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-turbo8 armhf 2.0.1-0ubuntu2 [90.0 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:43 http://ftpmaster.internal/ubuntu disco/universe armhf libdouble-conversion1 armhf 3.1.0-2 [37.7 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf libpcre2-16-0 armhf 10.32-5 [146 kB] Get:45 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5core5a armhf 5.12.2+dfsg-4 [1706 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main armhf libfreetype6 armhf 2.9.1-3 [278 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main armhf ucf all 3.0038+nmu1 [51.6 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf libfontconfig1 armhf 2.13.1-2ubuntu2 [95.8 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf fontconfig armhf 2.13.1-2ubuntu2 [169 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf 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http://ftpmaster.internal/ubuntu disco/main armhf libxcb-render0 armhf 1.13.1-2 [13.9 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-render-util0 armhf 0.3.9-1 [8858 B] Get:75 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-shape0 armhf 1.13.1-2 [5644 B] Get:76 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xinerama0 armhf 1.13.1-2 [5128 B] Get:77 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xinput0 armhf 1.13.1-2 [26.0 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xkb1 armhf 1.13.1-2 [26.1 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main armhf xkb-data all 2.23.1-1ubuntu1.18.10.1 [325 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main armhf libxkbcommon0 armhf 0.8.2-1 [86.2 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main armhf libxkbcommon-x11-0 armhf 0.8.2-1 [12.1 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:83 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5gui5 armhf 5.12.2+dfsg-4 [2292 kB] Get:84 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5positioning5 armhf 5.12.2+dfsg-1 [167 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main armhf libavahi-common-data armhf 0.7-4ubuntu5 [21.4 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main armhf libavahi-common3 armhf 0.7-4ubuntu5 [18.2 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main armhf libavahi-client3 armhf 0.7-4ubuntu5 [21.8 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5support0 armhf 1.17-1 [30.0 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main armhf libk5crypto3 armhf 1.17-1 [83.8 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main armhf libkeyutils1 armhf 1.6-6 [9028 B] Get:91 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5-3 armhf 1.17-1 [286 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main armhf libgssapi-krb5-2 armhf 1.17-1 [101 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main armhf libcups2 armhf 2.2.10-4 [179 kB] Get:94 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5widgets5 armhf 5.12.2+dfsg-4 [1955 kB] Get:95 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5printsupport5 armhf 5.12.2+dfsg-4 [177 kB] Get:96 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5qml5 armhf 5.12.2-2 [1228 kB] Get:97 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5quick5 armhf 5.12.2-2 [1101 kB] Get:98 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5sensors5 armhf 5.12.2-1 [95.1 kB] Get:99 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5webchannel5 armhf 5.12.2-1 [41.9 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main armhf libbrotli1 armhf 1.0.7-2 [259 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main armhf libwoff1 armhf 1.0.2-1build1 [35.3 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main armhf libxml2 armhf 2.9.4+dfsg1-7ubuntu3 [533 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main armhf libxslt1.1 armhf 1.1.32-2 [131 kB] Get:105 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5webkit5 armhf 5.212.0~alpha2-22 [9312 kB] Get:106 http://ftpmaster.internal/ubuntu disco/main armhf libxxf86vm1 armhf 1:1.1.4-1 [9770 B] Get:107 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7-minimal armhf 2.7.16-2 [335 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main armhf python2.7-minimal armhf 2.7.16-2 [1109 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main armhf python2-minimal armhf 2.7.16-1 [27.8 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main armhf python-minimal armhf 2.7.16-1 [5992 B] Get:111 http://ftpmaster.internal/ubuntu disco/main armhf mime-support all 3.60ubuntu1 [30.1 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7-stdlib armhf 2.7.16-2 [1835 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main armhf python2.7 armhf 2.7.16-2 [244 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main armhf libpython2-stdlib armhf 2.7.16-1 [7432 B] Get:115 http://ftpmaster.internal/ubuntu disco/main armhf libpython-stdlib armhf 2.7.16-1 [5828 B] Get:116 http://ftpmaster.internal/ubuntu disco/main armhf python2 armhf 2.7.16-1 [26.5 kB] Get:117 http://ftpmaster.internal/ubuntu disco/main armhf python armhf 2.7.16-1 [7836 B] Get:118 http://ftpmaster.internal/ubuntu disco/main armhf libmagic-mgc armhf 1:5.35-4 [200 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main armhf libmagic1 armhf 1:5.35-4 [66.8 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main armhf file armhf 1:5.35-4 [22.0 kB] Get:121 http://ftpmaster.internal/ubuntu disco/main armhf libelf1 armhf 0.176-1 [40.9 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main armhf libfribidi0 armhf 1.0.5-3.1 [24.3 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main armhf libsodium23 armhf 1.0.17-1 [133 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main armhf shared-mime-info armhf 1.10-1 [426 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main armhf gettext-base armhf 0.19.8.1-9 [46.0 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main armhf libedit2 armhf 3.1-20181209-1 [71.3 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main armhf libpsl5 armhf 0.20.2-2 [48.7 kB] Get:128 http://ftpmaster.internal/ubuntu disco/main armhf openssh-client armhf 1:7.9p1-10 [519 kB] Get:129 http://ftpmaster.internal/ubuntu disco/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main armhf m4 armhf 1.4.18-2 [186 kB] Get:131 http://ftpmaster.internal/ubuntu disco/main armhf autoconf all 2.69-11 [322 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:133 http://ftpmaster.internal/ubuntu disco/main armhf automake all 1:1.16.1-4ubuntu3 [522 kB] Get:134 http://ftpmaster.internal/ubuntu disco/main armhf autopoint all 0.19.8.1-9 [412 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main armhf cmake-data all 3.13.4-1 [1458 kB] Get:136 http://ftpmaster.internal/ubuntu disco/main armhf libarchive13 armhf 3.3.3-4 [269 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main armhf libroken18-heimdal armhf 7.5.0+dfsg-2.1 [34.0 kB] Get:138 http://ftpmaster.internal/ubuntu disco/main armhf libasn1-8-heimdal armhf 7.5.0+dfsg-2.1 [138 kB] Get:139 http://ftpmaster.internal/ubuntu disco/main armhf libheimbase1-heimdal armhf 7.5.0+dfsg-2.1 [24.0 kB] Get:140 http://ftpmaster.internal/ubuntu disco/main armhf libhcrypto4-heimdal armhf 7.5.0+dfsg-2.1 [76.7 kB] Get:141 http://ftpmaster.internal/ubuntu disco/main armhf libwind0-heimdal armhf 7.5.0+dfsg-2.1 [47.1 kB] Get:142 http://ftpmaster.internal/ubuntu disco/main armhf libhx509-5-heimdal armhf 7.5.0+dfsg-2.1 [87.8 kB] Get:143 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5-26-heimdal armhf 7.5.0+dfsg-2.1 [167 kB] Get:144 http://ftpmaster.internal/ubuntu disco/main armhf libheimntlm0-heimdal armhf 7.5.0+dfsg-2.1 [13.1 kB] Get:145 http://ftpmaster.internal/ubuntu disco/main armhf libgssapi3-heimdal armhf 7.5.0+dfsg-2.1 [78.7 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1 [13.2 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main armhf libsasl2-2 armhf 2.1.27+dfsg-1 [42.2 kB] Get:148 http://ftpmaster.internal/ubuntu disco/main armhf libldap-common all 2.4.47+dfsg-3ubuntu2 [16.6 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3ubuntu2 [132 kB] Get:150 http://ftpmaster.internal/ubuntu disco/main armhf libnghttp2-14 armhf 1.36.0-2 [68.4 kB] Get:151 http://ftpmaster.internal/ubuntu disco/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [49.2 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main armhf libssh-4 armhf 0.8.6-3 [162 kB] Get:153 http://ftpmaster.internal/ubuntu disco/main armhf libcurl4 armhf 7.64.0-2ubuntu1 [198 kB] Get:154 http://ftpmaster.internal/ubuntu disco/main armhf libjsoncpp1 armhf 1.7.4-3 [65.9 kB] Get:155 http://ftpmaster.internal/ubuntu disco/main armhf librhash0 armhf 1.3.8-1 [125 kB] Get:156 http://ftpmaster.internal/ubuntu disco/main armhf libuv1 armhf 1.24.1-1 [58.0 kB] Get:157 http://ftpmaster.internal/ubuntu disco/main armhf cmake armhf 3.13.4-1 [2831 kB] Get:158 http://ftpmaster.internal/ubuntu disco/universe armhf cython armhf 0.29.2-2build1 [1267 kB] Get:159 http://ftpmaster.internal/ubuntu disco/main armhf libtool all 2.4.6-10 [194 kB] Get:160 http://ftpmaster.internal/ubuntu disco/main armhf dh-autoreconf all 19 [16.1 kB] Get:161 http://ftpmaster.internal/ubuntu disco/main armhf libarchive-zip-perl all 1.64-1 [84.9 kB] Get:162 http://ftpmaster.internal/ubuntu disco/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [13.7 kB] Get:163 http://ftpmaster.internal/ubuntu disco/main armhf dh-strip-nondeterminism all 1.1.2-1 [5208 B] Get:164 http://ftpmaster.internal/ubuntu disco/main armhf dwz armhf 0.12-3 [72.1 kB] Get:165 http://ftpmaster.internal/ubuntu disco/main armhf libcroco3 armhf 0.6.12-3 [69.6 kB] Get:166 http://ftpmaster.internal/ubuntu disco/main armhf gettext armhf 0.19.8.1-9 [833 kB] Get:167 http://ftpmaster.internal/ubuntu disco/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:168 http://ftpmaster.internal/ubuntu disco/main armhf po-debconf all 1.0.21 [233 kB] Get:169 http://ftpmaster.internal/ubuntu disco/main armhf debhelper all 12ubuntu1 [887 kB] Get:170 http://ftpmaster.internal/ubuntu disco/main armhf mysql-common all 5.8+1.0.5 [7352 B] Get:171 http://ftpmaster.internal/ubuntu disco/main armhf libmysqlclient20 armhf 5.7.25-1 [752 kB] Get:172 http://ftpmaster.internal/ubuntu disco/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1ubuntu2 [166 kB] Get:173 http://ftpmaster.internal/ubuntu disco/main armhf libmysqlclient-dev armhf 5.7.25-1 [1106 kB] Get:174 http://ftpmaster.internal/ubuntu disco/main armhf default-libmysqlclient-dev armhf 1.0.5 [3792 B] Get:175 http://ftpmaster.internal/ubuntu disco/universe armhf gdal-data all 2.4.0+dfsg-1ubuntu3 [514 kB] Get:176 http://ftpmaster.internal/ubuntu disco/main armhf libgfortran5 armhf 9-20190402-1ubuntu1 [251 kB] Get:177 http://ftpmaster.internal/ubuntu disco/main armhf libgfortran-8-dev armhf 8.3.0-6ubuntu1 [270 kB] Get:178 http://ftpmaster.internal/ubuntu disco/main armhf gfortran-8 armhf 8.3.0-6ubuntu1 [7247 kB] Get:179 http://ftpmaster.internal/ubuntu disco/main armhf gfortran armhf 4:8.3.0-1ubuntu3 [1364 B] Get:180 http://ftpmaster.internal/ubuntu disco/universe armhf hdf5-helpers armhf 1.10.4+repack-10 [14.0 kB] Get:181 http://ftpmaster.internal/ubuntu disco/main armhf libnl-3-200 armhf 3.4.0-1 [46.1 kB] Get:182 http://ftpmaster.internal/ubuntu disco/main armhf libnl-route-3-200 armhf 3.4.0-1 [124 kB] Get:183 http://ftpmaster.internal/ubuntu disco/main armhf libibverbs1 armhf 22.1-1 [43.4 kB] Get:184 http://ftpmaster.internal/ubuntu disco/main armhf ibverbs-providers armhf 22.1-1 [18.5 kB] Get:185 http://ftpmaster.internal/ubuntu disco/main armhf icu-devtools armhf 63.1-6 [160 kB] Get:186 http://ftpmaster.internal/ubuntu disco/universe armhf libaec0 armhf 1.0.2-1 [19.1 kB] Get:187 http://ftpmaster.internal/ubuntu disco/universe armhf libaom0 armhf 1.0.0-3 [775 kB] Get:188 http://ftpmaster.internal/ubuntu disco/main armhf libblas3 armhf 3.8.0-2 [98.5 kB] Get:189 http://ftpmaster.internal/ubuntu disco/main armhf liblapack3 armhf 3.8.0-2 [1619 kB] Get:190 http://ftpmaster.internal/ubuntu disco/universe armhf libarpack2 armhf 3.7.0-1 [78.0 kB] Get:191 http://ftpmaster.internal/ubuntu disco/universe armhf libsuperlu5 armhf 5.2.1+dfsg1-4 [132 kB] Get:192 http://ftpmaster.internal/ubuntu disco/universe armhf libarmadillo9 armhf 1:9.200.7+dfsg-1 [83.9 kB] Get:193 http://ftpmaster.internal/ubuntu disco/main armhf libblas-dev armhf 3.8.0-2 [105 kB] Get:194 http://ftpmaster.internal/ubuntu disco/main armhf liblapack-dev armhf 3.8.0-2 [1667 kB] Get:195 http://ftpmaster.internal/ubuntu disco/universe armhf libarpack2-dev armhf 3.7.0-1 [89.4 kB] Get:196 http://ftpmaster.internal/ubuntu disco/universe armhf libsz2 armhf 1.0.2-1 [5072 B] Get:197 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-103 armhf 1.10.4+repack-10 [1262 kB] Get:198 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-turbo8-dev armhf 2.0.1-0ubuntu2 [203 kB] Get:199 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:200 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:201 http://ftpmaster.internal/ubuntu disco/universe armhf libaec-dev armhf 1.0.2-1 [16.3 kB] Get:202 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-cpp-103 armhf 1.10.4+repack-10 [99.8 kB] Get:203 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-dev armhf 1.10.4+repack-10 [2491 kB] Get:204 http://ftpmaster.internal/ubuntu disco/universe armhf libsuperlu-dev armhf 5.2.1+dfsg1-4 [16.4 kB] Get:205 http://ftpmaster.internal/ubuntu disco/universe armhf libarmadillo-dev armhf 1:9.200.7+dfsg-1 [356 kB] Get:206 http://ftpmaster.internal/ubuntu disco/universe armhf libva2 armhf 2.4.0-1 [42.5 kB] Get:207 http://ftpmaster.internal/ubuntu disco/universe armhf libva-drm2 armhf 2.4.0-1 [6060 B] Get:208 http://ftpmaster.internal/ubuntu disco/main armhf libxfixes3 armhf 1:5.0.3-1 [9390 B] Get:209 http://ftpmaster.internal/ubuntu disco/universe armhf libva-x11-2 armhf 2.4.0-1 [9412 B] Get:210 http://ftpmaster.internal/ubuntu disco/main armhf libvdpau1 armhf 1.1.1-8ubuntu1 [23.7 kB] Get:211 http://ftpmaster.internal/ubuntu disco/universe armhf libavutil56 armhf 7:4.1.1-1 [200 kB] Get:212 http://ftpmaster.internal/ubuntu disco/main armhf libpixman-1-0 armhf 0.36.0-1 [157 kB] Get:213 http://ftpmaster.internal/ubuntu disco/main armhf libcairo2 armhf 1.16.0-4 [510 kB] Get:214 http://ftpmaster.internal/ubuntu disco/universe armhf libcodec2-0.8.1 armhf 0.8.1-2 [216 kB] Get:215 http://ftpmaster.internal/ubuntu disco/universe armhf libgsm1 armhf 1.0.18-2 [23.3 kB] Get:216 http://ftpmaster.internal/ubuntu disco/main armhf libmp3lame0 armhf 3.100-2build1 [120 kB] Get:217 http://ftpmaster.internal/ubuntu disco/universe armhf libopenjp2-7 armhf 2.3.0-2 [126 kB] Get:218 http://ftpmaster.internal/ubuntu disco/main armhf libopus0 armhf 1.3-1 [173 kB] Get:219 http://ftpmaster.internal/ubuntu disco/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:220 http://ftpmaster.internal/ubuntu disco/main armhf libtiff5 armhf 4.0.10-4 [139 kB] Get:221 http://ftpmaster.internal/ubuntu disco/main armhf libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [6056 B] Get:222 http://ftpmaster.internal/ubuntu disco/main armhf libgdk-pixbuf2.0-0 armhf 2.38.1+dfsg-1 [153 kB] Get:223 http://ftpmaster.internal/ubuntu disco/main armhf libthai-data all 0.1.28-2 [134 kB] Get:224 http://ftpmaster.internal/ubuntu disco/main armhf libdatrie1 armhf 0.2.12-2 [15.0 kB] Get:225 http://ftpmaster.internal/ubuntu disco/main armhf libthai0 armhf 0.1.28-2 [14.7 kB] Get:226 http://ftpmaster.internal/ubuntu disco/main armhf libpango-1.0-0 armhf 1.42.4-6 [138 kB] Get:227 http://ftpmaster.internal/ubuntu disco/main armhf libpangoft2-1.0-0 armhf 1.42.4-6 [30.0 kB] Get:228 http://ftpmaster.internal/ubuntu disco/main armhf libpangocairo-1.0-0 armhf 1.42.4-6 [19.5 kB] Get:229 http://ftpmaster.internal/ubuntu disco-proposed/main armhf librsvg2-2 armhf 2.44.10-1ubuntu1 [930 kB] Get:230 http://ftpmaster.internal/ubuntu disco/universe armhf libshine3 armhf 3.1.1-2 [21.6 kB] Get:231 http://ftpmaster.internal/ubuntu disco/main armhf libsnappy1v5 armhf 1.1.7-1 [14.3 kB] Get:232 http://ftpmaster.internal/ubuntu disco/main armhf libspeex1 armhf 1.2~rc1.2-1ubuntu2 [43.7 kB] Get:233 http://ftpmaster.internal/ubuntu disco/main armhf libsoxr0 armhf 0.1.2-3 [51.1 kB] Get:234 http://ftpmaster.internal/ubuntu disco/universe armhf libswresample3 armhf 7:4.1.1-1 [50.9 kB] Get:235 http://ftpmaster.internal/ubuntu disco/main armhf libtheora0 armhf 1.1.1+dfsg.1-15 [139 kB] Get:236 http://ftpmaster.internal/ubuntu disco/main armhf libtwolame0 armhf 0.3.13-4 [42.4 kB] Get:237 http://ftpmaster.internal/ubuntu disco/main armhf libvorbis0a armhf 1.3.6-2 [75.9 kB] Get:238 http://ftpmaster.internal/ubuntu disco/main armhf libvorbisenc2 armhf 1.3.6-2 [64.2 kB] Get:239 http://ftpmaster.internal/ubuntu disco/main armhf libvpx5 armhf 1.7.0-3 [449 kB] Get:240 http://ftpmaster.internal/ubuntu disco/main armhf libwavpack1 armhf 5.1.0-5 [65.3 kB] Get:241 http://ftpmaster.internal/ubuntu disco/main armhf libwebpmux3 armhf 0.6.1-2 [16.0 kB] Get:242 http://ftpmaster.internal/ubuntu disco/universe armhf libx264-155 armhf 2:0.155.2917+git0a84d98-2 [438 kB] Get:243 http://ftpmaster.internal/ubuntu disco/universe armhf libx265-165 armhf 2.9-4 [526 kB] Get:244 http://ftpmaster.internal/ubuntu disco/universe armhf libxvidcore4 armhf 2:1.3.5-1 [163 kB] Get:245 http://ftpmaster.internal/ubuntu disco/universe armhf libzvbi-common all 0.2.35-16 [32.4 kB] Get:246 http://ftpmaster.internal/ubuntu disco/universe armhf libzvbi0 armhf 0.2.35-16 [208 kB] Get:247 http://ftpmaster.internal/ubuntu disco/universe armhf libavcodec58 armhf 7:4.1.1-1 [4476 kB] Get:248 http://ftpmaster.internal/ubuntu disco/universe armhf libavutil-dev armhf 7:4.1.1-1 [317 kB] Get:249 http://ftpmaster.internal/ubuntu disco/universe armhf libswresample-dev armhf 7:4.1.1-1 [59.6 kB] Get:250 http://ftpmaster.internal/ubuntu disco/universe armhf libavcodec-dev armhf 7:4.1.1-1 [4998 kB] Get:251 http://ftpmaster.internal/ubuntu disco/universe armhf libbluray2 armhf 1:1.1.0-1 [121 kB] Get:252 http://ftpmaster.internal/ubuntu disco/universe armhf libchromaprint1 armhf 1.4.3-3 [33.4 kB] Get:253 http://ftpmaster.internal/ubuntu disco/universe armhf libgme0 armhf 0.6.2-1 [106 kB] Get:254 http://ftpmaster.internal/ubuntu disco/main armhf libmpg123-0 armhf 1.25.10-2 [110 kB] Get:255 http://ftpmaster.internal/ubuntu disco/main armhf libvorbisfile3 armhf 1.3.6-2 [15.2 kB] Get:256 http://ftpmaster.internal/ubuntu disco/universe armhf libopenmpt0 armhf 0.4.3-1 [529 kB] Get:257 http://ftpmaster.internal/ubuntu disco/main armhf libssh-gcrypt-4 armhf 0.8.6-3 [165 kB] Get:258 http://ftpmaster.internal/ubuntu disco/universe armhf libavformat58 armhf 7:4.1.1-1 [895 kB] Get:259 http://ftpmaster.internal/ubuntu disco/universe armhf libavformat-dev armhf 7:4.1.1-1 [1131 kB] Get:260 http://ftpmaster.internal/ubuntu disco/main armhf libboost1.67-dev armhf 1.67.0-13 [8362 kB] Get:261 http://ftpmaster.internal/ubuntu disco/main armhf libboost-dev armhf 1.67.0.1 [3228 B] Get:262 http://ftpmaster.internal/ubuntu disco/universe armhf libcharls2 armhf 2.0.0+dfsg-1 [55.0 kB] Get:263 http://ftpmaster.internal/ubuntu disco/universe armhf libcharls-dev armhf 2.0.0+dfsg-1 [6552 B] Get:264 http://ftpmaster.internal/ubuntu disco/main armhf libcurl3-gnutls armhf 7.64.0-2ubuntu1 [197 kB] Get:265 http://ftpmaster.internal/ubuntu disco/main armhf libcurl4-gnutls-dev armhf 7.64.0-2ubuntu1 [289 kB] Get:266 http://ftpmaster.internal/ubuntu disco/universe armhf libdap25 armhf 3.20.2-1 [372 kB] Get:267 http://ftpmaster.internal/ubuntu disco/universe armhf libdapserver7v5 armhf 3.20.2-1 [18.8 kB] Get:268 http://ftpmaster.internal/ubuntu disco/universe armhf libdapclient6v5 armhf 3.20.2-1 [79.4 kB] Get:269 http://ftpmaster.internal/ubuntu disco/main armhf libicu-dev armhf 63.1-6 [8923 kB] Get:270 http://ftpmaster.internal/ubuntu disco/main armhf libxml2-dev armhf 2.9.4+dfsg1-7ubuntu3 [654 kB] Get:271 http://ftpmaster.internal/ubuntu disco/main armhf uuid-dev armhf 2.33.1-0.1ubuntu2 [32.7 kB] Get:272 http://ftpmaster.internal/ubuntu disco/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:273 http://ftpmaster.internal/ubuntu disco/universe armhf libdap-dev armhf 3.20.2-1 [708 kB] Get:274 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-amdgpu1 armhf 2.4.97-1ubuntu1 [16.1 kB] Get:275 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-radeon1 armhf 2.4.97-1ubuntu1 [19.0 kB] Get:276 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-nouveau2 armhf 2.4.97-1ubuntu1 [14.5 kB] Get:277 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-omap1 armhf 2.4.97-1ubuntu1 [6320 B] Get:278 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-freedreno1 armhf 2.4.97-1ubuntu1 [16.8 kB] Get:279 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-exynos1 armhf 2.4.97-1ubuntu1 [9312 B] Get:280 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-tegra0 armhf 2.4.97-1ubuntu1 [5688 B] Get:281 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-etnaviv1 armhf 2.4.97-1ubuntu1 [10.0 kB] Get:282 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-dev armhf 2.4.97-1ubuntu1 [130 kB] Get:283 http://ftpmaster.internal/ubuntu disco/universe armhf libepsilon1 armhf 0.9.2+dfsg-4 [36.0 kB] Get:284 http://ftpmaster.internal/ubuntu disco/main armhf libevent-2.1-6 armhf 2.1.8-stable-4build1 [115 kB] Get:285 http://ftpmaster.internal/ubuntu disco/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4build1 [75.0 kB] Get:286 http://ftpmaster.internal/ubuntu disco/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4build1 [4904 B] Get:287 http://ftpmaster.internal/ubuntu disco/main armhf libexpat1-dev armhf 2.2.6-1 [107 kB] Get:288 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-double3 armhf 3.3.8-2 [426 kB] Get:289 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-single3 armhf 3.3.8-2 [709 kB] Get:290 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-bin armhf 3.3.8-2 [24.7 kB] Get:291 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-dev armhf 3.3.8-2 [1122 kB] Get:292 http://ftpmaster.internal/ubuntu disco/main armhf libpng-dev armhf 1.6.36-6 [167 kB] Get:293 http://ftpmaster.internal/ubuntu disco/main armhf libfreetype6-dev armhf 2.9.1-3 [445 kB] Get:294 http://ftpmaster.internal/ubuntu disco/main armhf libfontconfig1-dev armhf 2.13.1-2ubuntu2 [717 kB] Get:295 http://ftpmaster.internal/ubuntu disco/universe armhf libfyba0 armhf 4.1.1-6 [99.1 kB] Get:296 http://ftpmaster.internal/ubuntu disco/universe armhf libfyba-dev armhf 4.1.1-6 [159 kB] Get:297 http://ftpmaster.internal/ubuntu disco/universe armhf libfreexl1 armhf 1.0.5-3 [31.2 kB] Get:298 http://ftpmaster.internal/ubuntu disco/universe armhf libgeos-3.7.1 armhf 3.7.1-1 [400 kB] Get:299 http://ftpmaster.internal/ubuntu disco/universe armhf libgeos-c1v5 armhf 3.7.1-1 [49.4 kB] Get:300 http://ftpmaster.internal/ubuntu disco/universe armhf proj-data all 5.2.0-1 [6952 kB] Get:301 http://ftpmaster.internal/ubuntu disco/universe armhf libproj13 armhf 5.2.0-1 [158 kB] Get:302 http://ftpmaster.internal/ubuntu disco/universe armhf libgeotiff2 armhf 1.4.3-1 [46.7 kB] Get:303 http://ftpmaster.internal/ubuntu disco/main armhf libgif7 armhf 5.1.4-3 [28.3 kB] Get:304 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf4-0-alt armhf 4.2.13-4 [230 kB] Get:305 http://ftpmaster.internal/ubuntu disco/universe armhf libminizip1 armhf 1.1-8build1 [18.5 kB] Get:306 http://ftpmaster.internal/ubuntu disco/universe armhf liburiparser1 armhf 0.9.1-1 [32.2 kB] Get:307 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlbase1 armhf 1.3.0-7 [38.3 kB] Get:308 http://ftpmaster.internal/ubuntu disco/universe armhf libkmldom1 armhf 1.3.0-7 [147 kB] Get:309 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlengine1 armhf 1.3.0-7 [61.7 kB] Get:310 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf13 armhf 1:4.6.2-1build1 [311 kB] Get:311 http://ftpmaster.internal/ubuntu disco/main armhf libltdl7 armhf 2.4.6-10 [35.2 kB] Get:312 http://ftpmaster.internal/ubuntu disco/main armhf libodbc1 armhf 2.3.6-0.1build1 [156 kB] Get:313 http://ftpmaster.internal/ubuntu disco/universe armhf libogdi3.2 armhf 3.2.1+ds-4 [184 kB] Get:314 http://ftpmaster.internal/ubuntu disco/main armhf liblcms2-2 armhf 2.9-3 [113 kB] Get:315 http://ftpmaster.internal/ubuntu disco/main armhf libnspr4 armhf 2:4.20-1ubuntu1 [84.6 kB] Get:316 http://ftpmaster.internal/ubuntu disco/main armhf libnss3 armhf 2:3.42-1ubuntu2 [956 kB] Get:317 http://ftpmaster.internal/ubuntu disco/main armhf libpoppler85 armhf 0.74.0-0ubuntu1 [768 kB] Get:318 http://ftpmaster.internal/ubuntu disco/main armhf libpq5 armhf 11.2-1 [89.9 kB] Get:319 http://ftpmaster.internal/ubuntu disco/universe armhf libqhull7 armhf 2015.2-4 [134 kB] Get:320 http://ftpmaster.internal/ubuntu disco/universe armhf libspatialite7 armhf 4.3.0a-5build2 [1298 kB] Get:321 http://ftpmaster.internal/ubuntu disco/universe armhf libxerces-c3.2 armhf 3.2.2+debian-1build1 [720 kB] Get:322 http://ftpmaster.internal/ubuntu disco/main armhf odbcinst armhf 2.3.6-0.1build1 [14.1 kB] Get:323 http://ftpmaster.internal/ubuntu disco/main armhf odbcinst1debian2 armhf 2.3.6-0.1build1 [33.6 kB] Get:324 http://ftpmaster.internal/ubuntu disco/universe armhf libgdal20 armhf 2.4.0+dfsg-1ubuntu3 [4974 kB] Get:325 http://ftpmaster.internal/ubuntu disco/universe armhf libgeos-dev armhf 3.7.1-1 [73.9 kB] Get:326 http://ftpmaster.internal/ubuntu disco/main armhf libgif-dev armhf 5.1.4-3 [18.1 kB] Get:327 http://ftpmaster.internal/ubuntu disco/main armhf libllvm8 armhf 1:8-3 [11.8 MB] Get:328 http://ftpmaster.internal/ubuntu disco/main armhf libsensors-config all 1:3.5.0-3ubuntu1 [6168 B] Get:329 http://ftpmaster.internal/ubuntu disco/main armhf libsensors5 armhf 1:3.5.0-3ubuntu1 [24.2 kB] Get:330 http://ftpmaster.internal/ubuntu disco/main armhf libgl1-mesa-dri armhf 19.0.1-1ubuntu2 [4167 kB] Get:331 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-glx0 armhf 1.13.1-2 [20.2 kB] Get:332 http://ftpmaster.internal/ubuntu disco/main armhf libxdamage1 armhf 1:1.1.4-3 [6488 B] Get:333 http://ftpmaster.internal/ubuntu disco/main armhf libglx-mesa0 armhf 19.0.1-1ubuntu2 [120 kB] Get:334 http://ftpmaster.internal/ubuntu disco/main armhf libglx0 armhf 1.1.1-0ubuntu1 [23.4 kB] Get:335 http://ftpmaster.internal/ubuntu disco/main armhf libgl1 armhf 1.1.1-0ubuntu1 [97.8 kB] Get:336 http://ftpmaster.internal/ubuntu disco/universe armhf libgl2ps1.4 armhf 1.4.0+dfsg1-2 [33.6 kB] Get:337 http://ftpmaster.internal/ubuntu disco/universe armhf libgl2ps-dev armhf 1.4.0+dfsg1-2 [12.9 kB] Get:338 http://ftpmaster.internal/ubuntu disco/main armhf libgles1 armhf 1.1.1-0ubuntu1 [11.4 kB] Get:339 http://ftpmaster.internal/ubuntu disco/main armhf libglu1-mesa armhf 9.0.0-2.1build1 [134 kB] Get:340 http://ftpmaster.internal/ubuntu disco/main armhf xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:341 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-dev all 2018.4-4 [251 kB] Get:342 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-core-dev all 2018.4-4 [2620 B] Get:343 http://ftpmaster.internal/ubuntu disco/main armhf libxau-dev armhf 1:1.0.8-1 [9438 B] Get:344 http://ftpmaster.internal/ubuntu disco/main armhf libxdmcp-dev armhf 1:1.1.2-3 [23.6 kB] Get:345 http://ftpmaster.internal/ubuntu disco/main armhf xtrans-dev all 1.3.5-1 [70.5 kB] Get:346 http://ftpmaster.internal/ubuntu disco/main armhf libpthread-stubs0-dev armhf 0.4-1 [5384 B] Get:347 http://ftpmaster.internal/ubuntu disco/main armhf libxcb1-dev armhf 1.13.1-2 [77.2 kB] Get:348 http://ftpmaster.internal/ubuntu disco/main armhf libx11-dev armhf 2:1.6.7-1 [588 kB] Get:349 http://ftpmaster.internal/ubuntu disco/main armhf mesa-common-dev armhf 19.0.1-1ubuntu2 [598 kB] Get:350 http://ftpmaster.internal/ubuntu disco/main armhf libglvnd-core-dev armhf 1.1.1-0ubuntu1 [12.6 kB] Get:351 http://ftpmaster.internal/ubuntu disco/main armhf libopengl0 armhf 1.1.1-0ubuntu1 [33.9 kB] Get:352 http://ftpmaster.internal/ubuntu disco/main armhf libglvnd-dev armhf 1.1.1-0ubuntu1 [3404 B] Get:353 http://ftpmaster.internal/ubuntu disco/main armhf libx11-xcb-dev armhf 2:1.6.7-1 [9748 B] Get:354 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri3-dev armhf 1.13.1-2 [7384 B] Get:355 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-render0-dev armhf 1.13.1-2 [18.2 kB] Get:356 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-randr0-dev armhf 1.13.1-2 [20.3 kB] Get:357 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-shape0-dev armhf 1.13.1-2 [7084 B] Get:358 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xfixes0-dev armhf 1.13.1-2 [11.9 kB] Get:359 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-sync-dev armhf 1.13.1-2 [10.5 kB] Get:360 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-present-dev armhf 1.13.1-2 [7064 B] Get:361 http://ftpmaster.internal/ubuntu disco/main armhf libxshmfence-dev armhf 1.3-1 [3552 B] Get:362 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri2-0-dev armhf 1.13.1-2 [8476 B] Get:363 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-glx0-dev armhf 1.13.1-2 [27.0 kB] Get:364 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:365 http://ftpmaster.internal/ubuntu disco/main armhf libxfixes-dev armhf 1:5.0.3-1 [9856 B] Get:366 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:367 http://ftpmaster.internal/ubuntu disco/main armhf libxdamage-dev armhf 1:1.1.4-3 [4692 B] Get:368 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-xext-dev all 2018.4-4 [2620 B] Get:369 http://ftpmaster.internal/ubuntu disco/main armhf libxext-dev armhf 2:1.3.3-1 [77.8 kB] Get:370 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:371 http://ftpmaster.internal/ubuntu disco/main armhf libxxf86vm-dev armhf 1:1.1.4-1 [12.7 kB] Get:372 http://ftpmaster.internal/ubuntu disco/main armhf libgl1-mesa-dev armhf 19.0.1-1ubuntu2 [6036 B] Get:373 http://ftpmaster.internal/ubuntu disco/main armhf libglu1-mesa-dev armhf 9.0.0-2.1build1 [170 kB] Get:374 http://ftpmaster.internal/ubuntu disco/universe armhf libhwloc5 armhf 1.11.12-3 [83.5 kB] Get:375 http://ftpmaster.internal/ubuntu disco/main armhf libpciaccess0 armhf 0.14-1 [15.5 kB] Get:376 http://ftpmaster.internal/ubuntu disco/main armhf ocl-icd-libopencl1 armhf 2.2.11-1ubuntu1 [28.7 kB] Get:377 http://ftpmaster.internal/ubuntu disco/universe armhf libhwloc-plugins armhf 1.11.12-3 [11.2 kB] Get:378 http://ftpmaster.internal/ubuntu disco/universe armhf libpmix2 armhf 3.1.2-3 [447 kB] Get:379 http://ftpmaster.internal/ubuntu disco/universe armhf libopenmpi3 armhf 3.1.3-10 [2234 kB] Get:380 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-openmpi-103 armhf 1.10.4+repack-10 [1312 kB] Get:381 http://ftpmaster.internal/ubuntu disco/main armhf libice-dev armhf 2:1.0.9-2 [40.4 kB] Get:382 http://ftpmaster.internal/ubuntu disco/main armhf libimagequant0 armhf 2.12.2-1.1 [26.2 kB] Get:383 http://ftpmaster.internal/ubuntu disco/main armhf libjs-jquery all 3.3.1~dfsg-1 [329 kB] Get:384 http://ftpmaster.internal/ubuntu disco/main armhf libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:385 http://ftpmaster.internal/ubuntu disco/main armhf libjs-sphinxdoc all 1.8.5-1ubuntu1 [96.4 kB] Get:386 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlconvenience1 armhf 1.3.0-7 [38.8 kB] Get:387 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlregionator1 armhf 1.3.0-7 [16.8 kB] Get:388 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlxsd1 armhf 1.3.0-7 [24.8 kB] Get:389 http://ftpmaster.internal/ubuntu disco/main armhf libltdl-dev armhf 2.4.6-10 [160 kB] Get:390 http://ftpmaster.internal/ubuntu disco/universe armhf libminizip-dev armhf 1.1-8build1 [25.7 kB] Get:391 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf-c++4 armhf 4.2-11 [27.4 kB] Get:392 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf-dev armhf 1:4.6.2-1build1 [38.8 kB] Get:393 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf-cxx-legacy-dev armhf 4.2-11 [50.0 kB] Get:394 http://ftpmaster.internal/ubuntu disco/main armhf libnl-3-dev armhf 3.4.0-1 [87.1 kB] Get:395 http://ftpmaster.internal/ubuntu disco/main armhf libnl-route-3-dev armhf 3.4.0-1 [150 kB] Get:396 http://ftpmaster.internal/ubuntu disco/main armhf libogg-dev armhf 1.3.2-1 [155 kB] Get:397 http://ftpmaster.internal/ubuntu disco/main armhf libpcre16-3 armhf 2:8.39-12 [128 kB] Get:398 http://ftpmaster.internal/ubuntu disco/main armhf libpcre32-3 armhf 2:8.39-12 [120 kB] Get:399 http://ftpmaster.internal/ubuntu disco/main armhf libpcrecpp0v5 armhf 2:8.39-12 [13.1 kB] Get:400 http://ftpmaster.internal/ubuntu disco/main armhf libpcre3-dev armhf 2:8.39-12 [474 kB] Get:401 http://ftpmaster.internal/ubuntu disco/main armhf libpoppler-dev armhf 0.74.0-0ubuntu1 [5112 B] Get:402 http://ftpmaster.internal/ubuntu disco/main armhf libpoppler-private-dev armhf 0.74.0-0ubuntu1 [174 kB] Get:403 http://ftpmaster.internal/ubuntu disco/main armhf libpq-dev armhf 11.2-1 [145 kB] Get:404 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7 armhf 2.7.16-2 [892 kB] Get:405 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7-dev armhf 2.7.16-2 [31.0 MB] Get:406 http://ftpmaster.internal/ubuntu disco/main armhf libpython2-dev armhf 2.7.16-1 [7496 B] Get:407 http://ftpmaster.internal/ubuntu disco/main armhf libpython-dev armhf 2.7.16-1 [5888 B] Get:408 http://ftpmaster.internal/ubuntu disco/universe armhf libqhull-r7 armhf 2015.2-4 [132 kB] Get:409 http://ftpmaster.internal/ubuntu disco/universe armhf libqhull-dev armhf 2015.2-4 [332 kB] Get:410 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5opengl5 armhf 5.12.2+dfsg-4 [113 kB] Get:411 http://ftpmaster.internal/ubuntu disco/main armhf libsm-dev armhf 2:1.2.3-1 [15.2 kB] Get:412 http://ftpmaster.internal/ubuntu disco/main armhf libsqlite3-dev armhf 3.27.2-2 [611 kB] Get:413 http://ftpmaster.internal/ubuntu disco/universe armhf libswscale5 armhf 7:4.1.1-1 [130 kB] Get:414 http://ftpmaster.internal/ubuntu disco/universe armhf libswscale-dev armhf 7:4.1.1-1 [144 kB] Get:415 http://ftpmaster.internal/ubuntu disco/universe armhf libsymspg1 armhf 1.12.2-1 [59.5 kB] Get:416 http://ftpmaster.internal/ubuntu disco/universe armhf libsymspg-dev armhf 1.12.2-1 [67.0 kB] Get:417 http://ftpmaster.internal/ubuntu disco/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [790 kB] Get:418 http://ftpmaster.internal/ubuntu disco/main armhf libtheora-dev armhf 1.1.1+dfsg.1-15 [157 kB] Get:419 http://ftpmaster.internal/ubuntu disco/main armhf libjbig-dev armhf 2.1-3.1build1 [22.9 kB] Get:420 http://ftpmaster.internal/ubuntu disco/main armhf liblzma-dev armhf 5.2.4-1 [139 kB] Get:421 http://ftpmaster.internal/ubuntu disco/main armhf libtiffxx5 armhf 4.0.10-4 [5732 B] Get:422 http://ftpmaster.internal/ubuntu disco/main armhf libtiff-dev armhf 4.0.10-4 [261 kB] Get:423 http://ftpmaster.internal/ubuntu disco/main armhf libxft2 armhf 2.3.2-2 [31.6 kB] Get:424 http://ftpmaster.internal/ubuntu disco/main armhf libxss1 armhf 1:1.2.3-1 [7512 B] Get:425 http://ftpmaster.internal/ubuntu disco/main armhf libtk8.6 armhf 8.6.9-2 [618 kB] Get:426 http://ftpmaster.internal/ubuntu disco/universe armhf liburiparser-dev armhf 0.9.1-1 [11.9 kB] Get:427 http://ftpmaster.internal/ubuntu disco/universe armhf libvoro++1 armhf 0.4.6+dfsg1-3 [89.7 kB] Get:428 http://ftpmaster.internal/ubuntu disco/universe armhf libeigen3-dev all 3.3.7-1 [814 kB] Get:429 http://ftpmaster.internal/ubuntu disco/universe armhf libepsilon-dev armhf 0.9.2+dfsg-4 [44.9 kB] Get:430 http://ftpmaster.internal/ubuntu disco/universe armhf libfreexl-dev armhf 1.0.5-3 [29.2 kB] Get:431 http://ftpmaster.internal/ubuntu disco/universe armhf libgeotiff-dev armhf 1.4.3-1 [73.2 kB] Get:432 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf4-alt-dev armhf 4.2.13-4 [333 kB] Get:433 http://ftpmaster.internal/ubuntu disco/main armhf libjson-c-dev armhf 0.12.1+ds-2 [29.0 kB] Get:434 http://ftpmaster.internal/ubuntu disco/universe armhf libkml-dev armhf 1.3.0-7 [933 kB] Get:435 http://ftpmaster.internal/ubuntu disco/universe armhf libproj-dev armhf 5.2.0-1 [198 kB] Get:436 http://ftpmaster.internal/ubuntu disco/universe armhf libogdi3.2-dev armhf 3.2.1+ds-4 [23.7 kB] Get:437 http://ftpmaster.internal/ubuntu disco/universe armhf libopenjp2-7-dev armhf 2.3.0-2 [26.6 kB] Get:438 http://ftpmaster.internal/ubuntu disco/universe armhf libspatialite-dev armhf 4.3.0a-5build2 [1524 kB] Get:439 http://ftpmaster.internal/ubuntu disco/main armhf libwebpdemux2 armhf 0.6.1-2 [8760 B] Get:440 http://ftpmaster.internal/ubuntu disco/main armhf libwebp-dev armhf 0.6.1-2 [228 kB] Get:441 http://ftpmaster.internal/ubuntu disco/universe armhf libxerces-c-dev armhf 3.2.2+debian-1build1 [1525 kB] Get:442 http://ftpmaster.internal/ubuntu disco/main armhf libzstd-dev armhf 1.3.8+dfsg-3 [243 kB] Get:443 http://ftpmaster.internal/ubuntu disco/main armhf unixodbc-dev armhf 2.3.6-0.1build1 [202 kB] Get:444 http://ftpmaster.internal/ubuntu disco/universe armhf libgdal-dev armhf 2.4.0+dfsg-1ubuntu3 [7045 kB] Get:445 http://ftpmaster.internal/ubuntu disco/universe armhf openmpi-common all 3.1.3-10 [147 kB] Get:446 http://ftpmaster.internal/ubuntu disco/main armhf libibverbs-dev armhf 22.1-1 [149 kB] Get:447 http://ftpmaster.internal/ubuntu disco/universe armhf libhwloc-dev armhf 1.11.12-3 [149 kB] Get:448 http://ftpmaster.internal/ubuntu disco/universe armhf openmpi-bin armhf 3.1.3-10 [85.6 kB] Get:449 http://ftpmaster.internal/ubuntu disco/universe armhf libopenmpi-dev armhf 3.1.3-10 [851 kB] Get:450 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-openmpi-dev armhf 1.10.4+repack-10 [2461 kB] Get:451 http://ftpmaster.internal/ubuntu disco/universe armhf mpi-default-dev armhf 1.13 [3748 B] Get:452 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-mpi-dev armhf 1.10.4+repack-10 [4744 B] Get:453 http://ftpmaster.internal/ubuntu disco/main armhf libjsoncpp-dev armhf 1.7.4-3 [77.5 kB] Get:454 http://ftpmaster.internal/ubuntu disco/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:455 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6.3 armhf 6.3.0+dfsg2-2build6 [28.4 MB] Get:456 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6.3-qt armhf 6.3.0+dfsg2-2build6 [217 kB] Get:457 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6-jni armhf 6.3.0+dfsg2-2build6 [3887 kB] Get:458 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6-java armhf 6.3.0+dfsg2-2build6 [3300 kB] Get:459 http://ftpmaster.internal/ubuntu disco/main armhf libxrender-dev armhf 1:0.9.10-1 [21.7 kB] Get:460 http://ftpmaster.internal/ubuntu disco/main armhf libxft-dev armhf 2.3.2-2 [42.3 kB] Get:461 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-scrnsaver-dev all 2018.4-4 [2628 B] Get:462 http://ftpmaster.internal/ubuntu disco/main armhf libxss-dev armhf 1:1.2.3-1 [11.5 kB] Get:463 http://ftpmaster.internal/ubuntu disco/main armhf libxt-dev armhf 1:1.1.5-1 [366 kB] Get:464 http://ftpmaster.internal/ubuntu disco/universe armhf python-cbor armhf 1.0.0-1build2 [19.6 kB] Get:465 http://ftpmaster.internal/ubuntu disco/universe armhf python-concurrent.futures all 3.2.0-2 [34.6 kB] Get:466 http://ftpmaster.internal/ubuntu disco/main armhf python-configparser all 3.5.0b2-1 [59.3 kB] Get:467 http://ftpmaster.internal/ubuntu disco/universe armhf python-future all 0.16.0-1 [336 kB] Get:468 http://ftpmaster.internal/ubuntu disco/universe armhf python-lz4 armhf 1.1.0+dfsg-1build1 [23.5 kB] Get:469 http://ftpmaster.internal/ubuntu disco/main armhf python-cffi-backend armhf 1.12.2-1 [56.6 kB] Get:470 http://ftpmaster.internal/ubuntu disco/main armhf python-six all 1.12.0-1 [11.6 kB] Get:471 http://ftpmaster.internal/ubuntu disco/universe armhf python-nacl armhf 1.3.0-2 [42.8 kB] Get:472 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Get:492 http://ftpmaster.internal/ubuntu disco/universe armhf python-hyperlink all 17.3.1-2 [27.5 kB] Get:493 http://ftpmaster.internal/ubuntu disco/universe armhf python-incremental all 16.10.1-3 [14.4 kB] Get:494 http://ftpmaster.internal/ubuntu disco/universe armhf python-twisted-core all 18.9.0-3 [1989 kB] Get:495 http://ftpmaster.internal/ubuntu disco/universe armhf python-twisted all 18.9.0-3 [3716 B] Get:496 http://ftpmaster.internal/ubuntu disco/universe armhf python-txaio all 2.10.0-1 [18.7 kB] Get:497 http://ftpmaster.internal/ubuntu disco/universe armhf python-u-msgpack all 2.1-1 [7268 B] Get:498 http://ftpmaster.internal/ubuntu disco/universe armhf python-ubjson armhf 0.12.0-1build1 [29.5 kB] Get:499 http://ftpmaster.internal/ubuntu disco/universe armhf python-wsaccel armhf 0.6.2-1build2 [35.2 kB] Get:500 http://ftpmaster.internal/ubuntu disco/universe armhf python-autobahn all 17.10.1+dfsg1-3 [157 kB] Get:501 http://ftpmaster.internal/ubuntu disco/universe armhf mpi-default-bin armhf 1.13 [2968 B] Get:502 http://ftpmaster.internal/ubuntu disco/universe armhf python-mpi4py armhf 2.0.0-3build4 [361 kB] Get:503 http://ftpmaster.internal/ubuntu disco/universe armhf python-vtk6 armhf 6.3.0+dfsg2-2build6 [246 kB] Get:504 http://ftpmaster.internal/ubuntu disco/main armhf tcl8.6 armhf 8.6.9+dfsg-2 [14.2 kB] Get:505 http://ftpmaster.internal/ubuntu disco/main armhf tcl8.6-dev armhf 8.6.9+dfsg-2 [808 kB] Get:506 http://ftpmaster.internal/ubuntu disco/universe armhf tcl armhf 8.6.9+1 [5112 B] Get:507 http://ftpmaster.internal/ubuntu disco/universe armhf tcl-dev armhf 8.6.9+1 [5756 B] Get:508 http://ftpmaster.internal/ubuntu disco/universe armhf tcl-vtk6 armhf 6.3.0+dfsg2-2build6 [129 kB] Get:509 http://ftpmaster.internal/ubuntu disco/universe armhf tk8.6 armhf 8.6.9-2 [12.1 kB] Get:510 http://ftpmaster.internal/ubuntu disco/universe armhf tk8.6-dev armhf 8.6.9-2 [634 kB] Get:511 http://ftpmaster.internal/ubuntu disco/universe armhf tk armhf 8.6.9+1 [3240 B] Get:512 http://ftpmaster.internal/ubuntu disco/universe armhf tk-dev armhf 8.6.9+1 [3064 B] Get:513 http://ftpmaster.internal/ubuntu disco/universe armhf vtk6 armhf 6.3.0+dfsg2-2build6 [154 kB] Get:514 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6-dev armhf 6.3.0+dfsg2-2build6 [2143 kB] Get:515 http://ftpmaster.internal/ubuntu disco/universe armhf voro++-dev armhf 0.4.6+dfsg1-3 [124 kB] Get:516 http://ftpmaster.internal/ubuntu disco/main armhf opencl-c-headers all 2.2~2019.01.17-g49f07d3-1 [29.9 kB] Get:517 http://ftpmaster.internal/ubuntu disco/main armhf ocl-icd-opencl-dev armhf 2.2.11-1ubuntu1 [2520 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 261 MB in 24s (11.1 MB/s) Selecting previously unselected package libxau6:armhf. (Reading database ... 12526 files and directories currently installed.) Preparing to unpack .../000-libxau6_1%3a1.0.8-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../001-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../002-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../003-libxcb1_1.13.1-2_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../004-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../005-libx11-6_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.7-1) ... 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Setting up libboost1.67-dev:armhf (1.67.0-13) ... Setting up libexpat1:armhf (2.2.6-1) ... Setting up libpcrecpp0v5:armhf (2:8.39-12) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up libgraphite2-3:armhf (1.3.13-7) ... Setting up liblcms2-2:armhf (2.9-3) ... Setting up libpixman-1-0:armhf (0.36.0-1) ... Setting up libwayland-server0:armhf (1.16.0-1ubuntu2) ... Setting up libx11-xcb1:armhf (2:1.6.7-1) ... Setting up libpciaccess0:armhf (0.14-1) ... Setting up mysql-common (5.8+1.0.5) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:armhf (1:1.0.8-1) ... Setting up libkeyutils1:armhf (1.6-6) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libfftw3-single3:armhf (3.3.8-2) ... Setting up libsodium23:armhf (1.0.17-1) ... Setting up libmpg123-0:armhf (1.25.10-2) ... Setting up libogg0:armhf (1.3.2-1) ... Setting up libzstd-dev:armhf (1.3.8+dfsg-3) ... Setting up mime-support (3.60ubuntu1) ... 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Setting up libaom0:armhf (1.0.0-3) ... Setting up libbrotli1:armhf (1.0.7-2) ... Setting up libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Setting up libcodec2-0.8.1:armhf (0.8.1-2) ... Setting up libproj13:armhf (5.2.0-1) ... Setting up libsymspg1:armhf (1.12.2-1) ... Setting up x11-common (1:7.7+19ubuntu12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.5.0-3ubuntu1) ... Setting up libnghttp2-14:armhf (1.36.0-2) ... Setting up libmagic1:armhf (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.23.1-1ubuntu1.18.10.1) ... Setting up libqhull7:armhf (2015.2-4) ... Setting up file (1:5.35-4) ... Setting up libogg-dev:armhf (1.3.2-1) ... Setting up libxvidcore4:armhf (2:1.3.5-1) ... Setting up libepsilon1:armhf (0.9.2+dfsg-4) ... Setting up libldap-common (2.4.47+dfsg-3ubuntu2) ... 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Setting up tcl8.6-dev:armhf (8.6.9+dfsg-2) ... Setting up libedit2:armhf (3.1-20181209-1) ... Setting up libpng-dev:armhf (1.6.36-6) ... Setting up libxcb-keysyms1:armhf (0.4.0-1) ... Setting up libaec-dev:armhf (1.0.2-1) ... Setting up libarpack2:armhf (3.7.0-1) ... Setting up libxcb-shape0:armhf (1.13.1-2) ... Setting up libavahi-common3:armhf (0.7-4ubuntu5) ... Setting up libjbig-dev:armhf (2.1-3.1build1) ... Setting up libsuperlu5:armhf (5.2.1+dfsg1-4) ... Setting up m4 (1.4.18-2) ... Setting up libdap25:armhf (3.20.2-1) ... Setting up libxcb-render-util0:armhf (0.3.9-1) ... Setting up libgstreamer-plugins-base1.0-0:armhf (1.15.2-1) ... Setting up libnss3:armhf (2:3.42-1ubuntu2) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libxcb-icccm4:armhf (0.4.1-1.1) ... Setting up libhwloc-plugins:armhf (1.11.12-3) ... Setting up libdapserver7v5:armhf (3.20.2-1) ... Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up python2 (2.7.16-1) ... 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Setting up libopenjp2-7-dev (2.3.0-2) ... Setting up libxcb-sync1:armhf (1.13.1-2) ... Setting up libkmlregionator1:armhf (1.3.0-7) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libgeos-dev (3.7.1-1) ... Setting up libhdf5-103:armhf (1.10.4+repack-10) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:armhf (0.8.2-1) ... Setting up liblapack-dev:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:armhf (1.17-1) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up libodbc1:armhf (2.3.6-0.1build1) ... Setting up libspatialite-dev:armhf (4.3.0a-5build2) ... Setting up libqt5core5a:armhf (5.12.2+dfsg-4) ... Setting up libjs-sphinxdoc (1.8.5-1ubuntu1) ... Setting up libqhull-dev:armhf (2015.2-4) ... Setting up ocl-icd-opencl-dev:armhf (2.2.11-1ubuntu1) ... Setting up libssh-4:armhf (0.8.6-3) ... Setting up autoconf (2.69-11) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up libxcb-dri2-0:armhf (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:armhf (2.4.97-1ubuntu1) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:armhf (3.4.0-1) ... Setting up libva-drm2:armhf (2.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:armhf (5.12.2+dfsg-4) ... Setting up libxcb-randr0:armhf (1.13.1-2) ... Setting up tcl (8.6.9+1) ... Setting up libxslt1.1:armhf (1.1.32-2) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libogdi3.2-dev (3.2.1+ds-4) ... Setting up libpython2-dev:armhf (2.7.16-1) ... Setting up libtiff5:armhf (4.0.10-4) ... Setting up libfontconfig1:armhf (2.13.1-2ubuntu2) ... Setting up libarmadillo9 (1:9.200.7+dfsg-1) ... Setting up libdrm-omap1:armhf (2.4.97-1ubuntu1) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libqt5sensors5:armhf (5.12.2-1) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libbluray2:armhf (1:1.1.0-1) ... Setting up libsuperlu-dev:armhf (5.2.1+dfsg1-4) ... Setting up x11proto-scrnsaver-dev (2018.4-4) ... Setting up libwacom2:armhf (0.32-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up python (2.7.16-1) ... Setting up python-trie (0.2+ds-1) ... Setting up libfftw3-dev:armhf (3.3.8-2) ... Setting up libopenmpt0:armhf (0.4.3-1) ... Setting up libavahi-client3:armhf (0.7-4ubuntu5) ... Setting up libdrm-exynos1:armhf (2.4.97-1ubuntu1) ... Setting up python-incremental (16.10.1-3) ... Setting up python-constantly (15.1.0-1) ... Setting up python-hyperlink (17.3.1-2) ... Setting up python-ipaddress (1.0.17-1) ... Setting up libtiffxx5:armhf (4.0.10-4) ... Setting up libpoppler85:armhf (0.74.0-0ubuntu1) ... Setting up libdrm-amdgpu1:armhf (2.4.97-1ubuntu1) ... Setting up python-cffi-backend (1.12.2-1) ... Setting up libssh-gcrypt-4:armhf (0.8.6-3) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpoppler-dev:armhf (0.74.0-0ubuntu1) ... Setting up libllvm8:armhf (1:8-3) ... Setting up libkml-dev:armhf (1.3.0-7) ... Setting up libxcb-dri3-0:armhf (1.13.1-2) ... Setting up python-enum34 (1.1.6-2) ... Setting up cython (0.29.2-2build1) ... Setting up libibverbs1:armhf (22.1-1) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.97-1ubuntu1) ... Setting up libarpack2-dev:armhf (3.7.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libfontconfig1-dev:armhf (2.13.1-2ubuntu2) ... Setting up libxdamage1:armhf (1:1.1.4-3) ... Setting up libdrm-etnaviv1:armhf (2.4.97-1ubuntu1) ... Setting up libxcb1-dev:armhf (1.13.1-2) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libpmix2:armhf (3.1.2-3) ... Setting up libgbm1:armhf (19.0.1-1ubuntu2) ... Setting up ibverbs-providers:armhf (22.1-1) ... Setting up python-cbor (1.0.0-1build2) ... Setting up libsm-dev:armhf (2:1.2.3-1) ... Setting up libdrm-radeon1:armhf (2.4.97-1ubuntu1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up openssh-client (1:7.9p1-10) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libopenmpi3:armhf (3.1.3-10) ... Setting up libpoppler-private-dev:armhf (0.74.0-0ubuntu1) ... Setting up libqt5positioning5:armhf (5.12.2+dfsg-1) ... Setting up libpango-1.0-0:armhf (1.42.4-6) ... Setting up libgl1-mesa-dri:armhf (19.0.1-1ubuntu2) ... Setting up libhdf5-cpp-103:armhf (1.10.4+repack-10) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libx11-dev:armhf (2:1.6.7-1) ... Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libxcb-dri3-dev:armhf (1.13.1-2) ... Setting up python-pil:armhf (5.4.1-1) ... Setting up python-asn1crypto (0.24.0-1) ... Setting up python-attr (18.2.0-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:armhf (1.16.0-4) ... Setting up libqt5network5:armhf (5.12.2+dfsg-4) ... Setting up libxxf86vm1:armhf (1:1.1.4-1) ... Setting up libinput-bin (1.12.6-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-dev:armhf (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up libnl-route-3-dev:armhf (3.4.0-1) ... Setting up libltdl-dev:armhf (2.4.6-10) ... Setting up libgeotiff2:armhf (1.4.3-1) ... Setting up python-zope.interface (4.3.2-1build4) ... Setting up libegl-mesa0:armhf (19.0.1-1ubuntu2) ... Setting up libxcb-dri2-0-dev:armhf (1.13.1-2) ... Setting up libhdf5-openmpi-103:armhf (1.10.4+repack-10) ... Setting up python-configparser (3.5.0b2-1) ... Setting up libtiff-dev:armhf (4.0.10-4) ... Setting up python-wsaccel (0.6.2-1build2) ... Setting up python-pyasn1 (0.4.2-3) ... Setting up libxfixes3:armhf (1:5.0.3-1) ... Setting up libqt5qml5:armhf (5.12.2-2) ... Setting up python-nacl (1.3.0-2) ... Setting up python-idna (2.6-1) ... Setting up libgdk-pixbuf2.0-0:armhf (2.38.1+dfsg-1) ... Setting up python-pyasn1-modules (0.2.1-0.2) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python-concurrent.futures (3.2.0-2) ... Setting up libdrm-freedreno1:armhf (2.4.97-1ubuntu1) ... Setting up libqt5webchannel5:armhf (5.12.2-1) ... Setting up libxcb-render0-dev:armhf (1.13.1-2) ... Setting up libxcb-glx0-dev:armhf (1.13.1-2) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up libdrm-tegra0:armhf (2.4.97-1ubuntu1) ... Setting up tcl-dev:armhf (8.6.9+1) ... Setting up libxcb-shape0-dev:armhf (1.13.1-2) ... Setting up libxext-dev:armhf (2:1.3.3-1) ... Setting up libcups2:armhf (2.2.10-4) ... Setting up libvdpau1:armhf (1.1.1-8ubuntu1) ... Setting up libtheora0:armhf (1.1.1+dfsg.1-15) ... Setting up libegl1:armhf (1.1.1-0ubuntu1) ... Setting up libxcb-sync-dev:armhf (1.13.1-2) ... Setting up python-twisted-bin:armhf (18.9.0-3) ... Setting up libhwloc-dev:armhf (1.11.12-3) ... Setting up libxcb-xfixes0-dev:armhf (1.13.1-2) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up python-u-msgpack (2.1-1) ... Setting up libpangoft2-1.0-0:armhf (1.42.4-6) ... Setting up python-snappy (0.5.3-1build1) ... Setting up python-future (0.16.0-1) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python-ubjson (0.12.0-1build1) ... Setting up libva-x11-2:armhf (2.4.0-1) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up openmpi-bin (3.1.3-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libpangocairo-1.0-0:armhf (1.42.4-6) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libinput10:armhf (1.12.6-1) ... Setting up libx11-xcb-dev:armhf (2:1.6.7-1) ... Setting up python-trollius (2.1~b1-5) ... Setting up libdrm-dev:armhf (2.4.97-1ubuntu1) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libglx-mesa0:armhf (19.0.1-1ubuntu2) ... Setting up python-qrcode (6.1-1) ... update-alternatives: using /usr/bin/python2-qr to provide /usr/bin/qr (qr) in auto mode Setting up libglx0:armhf (1.1.1-0ubuntu1) ... Setting up libgeotiff-dev:armhf (1.4.3-1) ... Setting up po-debconf (1.0.21) ... Setting up python-automat (0.6.0-1) ... Setting up libxxf86vm-dev:armhf (1:1.1.4-1) ... Setting up libtk8.6:armhf (8.6.9-2) ... Setting up libqt5gui5:armhf (5.12.2+dfsg-4) ... Setting up python-cryptography (2.3-1ubuntu2) ... Setting up mpi-default-bin (1.13) ... Setting up libqt5widgets5:armhf (5.12.2+dfsg-4) ... Setting up libibverbs-dev:armhf (22.1-1) ... Setting up libxss-dev:armhf (1:1.2.3-1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libavutil56:armhf (7:4.1.1-1) ... Setting up librsvg2-2:armhf (2.44.10-1ubuntu1) ... Setting up libarmadillo-dev (1:9.200.7+dfsg-1) ... Setting up libxfixes-dev:armhf (1:5.0.3-1) ... Setting up libqt5printsupport5:armhf (5.12.2+dfsg-4) ... Setting up libgl1:armhf (1.1.1-0ubuntu1) ... Setting up libtheora-dev:armhf (1.1.1+dfsg.1-15) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libxcb-randr0-dev:armhf (1.13.1-2) ... Setting up libxt-dev:armhf (1:1.1.5-1) ... Setting up libxcb-present-dev:armhf (1.13.1-2) ... Setting up python-mpi4py (2.0.0-3build4) ... Setting up python-lz4 (1.1.0+dfsg-1build1) ... Setting up libqt5opengl5:armhf (5.12.2+dfsg-4) ... Setting up mesa-common-dev:armhf (19.0.1-1ubuntu2) ... Setting up libswscale5:armhf (7:4.1.1-1) ... Setting up libglu1-mesa:armhf (9.0.0-2.1build1) ... Setting up libopenmpi-dev:armhf (3.1.3-10) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up libhdf5-openmpi-dev (1.10.4+repack-10) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode Setting up libqt5quick5:armhf (5.12.2-2) ... Setting up python-openssl (19.0.0-1) ... Setting up python-service-identity (16.0.0-2) ... Setting up libxft-dev:armhf (2.3.2-2) ... Setting up libxdamage-dev:armhf (1:1.1.4-3) ... Setting up libavutil-dev:armhf (7:4.1.1-1) ... Setting up tk8.6 (8.6.9-2) ... Setting up libldap-2.4-2:armhf (2.4.47+dfsg-3ubuntu2) ... Setting up libglvnd-dev:armhf (1.1.1-0ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.64.0-2ubuntu1) ... Setting up libnetcdf13:armhf (1:4.6.2-1build1) ... Setting up libqt5webkit5:armhf (5.212.0~alpha2-22) ... Setting up libswresample3:armhf (7:4.1.1-1) ... Setting up libcurl4-gnutls-dev:armhf (7.64.0-2ubuntu1) ... Setting up libnetcdf-c++4 (4.2-11) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up libswscale-dev:armhf (7:4.1.1-1) ... Setting up libnetcdf-dev (1:4.6.2-1build1) ... Setting up tk8.6-dev:armhf (8.6.9-2) ... Setting up mpi-default-dev (1.13) ... Setting up python-twisted-core (18.9.0-3) ... Setting up libdapclient6v5:armhf (3.20.2-1) ... Setting up libgl1-mesa-dev:armhf (19.0.1-1ubuntu2) ... Setting up libcurl4:armhf (7.64.0-2ubuntu1) ... Setting up libavcodec58:armhf (7:4.1.1-1) ... Setting up tk (8.6.9+1) ... Setting up libdap-dev:armhf (3.20.2-1) ... Setting up libchromaprint1:armhf (1.4.3-3) ... Setting up python-twisted (18.9.0-3) ... Setting up libxerces-c3.2:armhf (3.2.2+debian-1build1) ... Setting up libswresample-dev:armhf (7:4.1.1-1) ... Setting up libavformat58:armhf (7:4.1.1-1) ... Setting up libavcodec-dev:armhf (7:4.1.1-1) ... Setting up libpq5:armhf (11.2-1) ... Setting up libpq-dev (11.2-1) ... Setting up libavformat-dev:armhf (7:4.1.1-1) ... Setting up libnetcdf-cxx-legacy-dev (4.2-11) ... Setting up python-txaio (2.10.0-1) ... Setting up libgl2ps-dev (1.4.0+dfsg1-2) ... Setting up python-autobahn (17.10.1+dfsg1-3) ... Setting up tk-dev:armhf (8.6.9+1) ... Setting up libxerces-c-dev (3.2.2+debian-1build1) ... Setting up libhdf5-mpi-dev (1.10.4+repack-10) ... Setting up libhdf4-alt-dev (4.2.13-4) ... Setting up libglu1-mesa-dev:armhf (9.0.0-2.1build1) ... Setting up cmake (3.13.4-1) ... Setting up odbcinst (2.3.6-0.1build1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up odbcinst1debian2:armhf (2.3.6-0.1build1) ... Setting up libgdal20 (2.4.0+dfsg-1ubuntu3) ... Setting up unixodbc-dev:armhf (2.3.6-0.1build1) ... Setting up libvtk6.3 (6.3.0+dfsg2-2build6) ... Setting up debhelper (12ubuntu1) ... Setting up libvtk6.3-qt (6.3.0+dfsg2-2build6) ... Setting up tcl-vtk6 (6.3.0+dfsg2-2build6) ... Setting up libgdal-dev (2.4.0+dfsg-1ubuntu3) ... Setting up python-vtk6 (6.3.0+dfsg2-2build6) ... Setting up vtk6 (6.3.0+dfsg2-2build6) ... Setting up libvtk6-jni (6.3.0+dfsg2-2build6) ... Setting up libvtk6-java (6.3.0+dfsg2-2build6) ... Setting up libvtk6-dev (6.3.0+dfsg2-2build6) ... Setting up sbuild-build-depends-lammps-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-0ubuntu2) ... Processing triggers for systemd (240-6ubuntu4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-145-generic arm64 (armv7l) Toolchain package versions: binutils_2.32-7ubuntu4 dpkg-dev_1.19.6ubuntu1 g++-8_8.3.0-6ubuntu1 gcc-8_8.3.0-6ubuntu1 libc6-dev_2.29-0ubuntu2 libstdc++-8-dev_8.3.0-6ubuntu1 libstdc++6_9-20190402-1ubuntu1 linux-libc-dev_5.0.0-10.11 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-1 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.46 bash_5.0-3ubuntu1 binutils_2.32-7ubuntu4 binutils-arm-linux-gnueabihf_2.32-7ubuntu4 binutils-common_2.32-7ubuntu4 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu2 build-essential_12.6ubuntu1 bzip2_1.0.6-9 ca-certificates_20190110 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-1ubuntu1 cpp_4:8.3.0-1ubuntu3 cpp-8_8.3.0-6ubuntu1 cython_0.29.2-2build1 dash_0.5.10.2-4ubuntu1 debconf_1.5.71 debhelper_12ubuntu1 debianutils_4.8.6.1 default-libmysqlclient-dev_1.0.5 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-2 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.6ubuntu1 dpkg-dev_1.19.6ubuntu1 dwz_0.12-3 e2fslibs_1.44.6-1 e2fsprogs_1.44.6-1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu2 file_1:5.35-4 findutils_4.6.0+git+20190209-2 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1ubuntu3 g++-8_8.3.0-6ubuntu1 gcc_4:8.3.0-1ubuntu3 gcc-8_8.3.0-6ubuntu1 gcc-8-base_8.3.0-6ubuntu1 gcc-9-base_9-20190402-1ubuntu1 gdal-data_2.4.0+dfsg-1ubuntu3 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.3.0-1ubuntu3 gfortran-8_8.3.0-6ubuntu1 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hdf5-helpers_1.10.4+repack-10 hostname_3.21 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python-qrcode_6.1-1 python-service-identity_16.0.0-2 python-six_1.12.0-1 python-snappy_0.5.3-1build1 python-trie_0.2+ds-1 python-trollius_2.1~b1-5 python-twisted_18.9.0-3 python-twisted-bin_18.9.0-3 python-twisted-core_18.9.0-3 python-txaio_2.10.0-1 python-u-msgpack_2.1-1 python-ubjson_0.12.0-1build1 python-vtk6_6.3.0+dfsg2-2build6 python-wsaccel_0.6.2-1build2 python-zope.interface_4.3.2-1build4 python2_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-2 python2.7-minimal_2.7.16-2 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lammps-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 systemd_240-6ubuntu4 systemd-sysv_240-6ubuntu4 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-5 tcl_8.6.9+1 tcl-dev_8.6.9+1 tcl-vtk6_6.3.0+dfsg2-2build6 tcl8.6_8.6.9+dfsg-2 tcl8.6-dev_8.6.9+dfsg-2 tk_8.6.9+1 tk-dev_8.6.9+1 tk8.6_8.6.9-2 tk8.6-dev_8.6.9-2 tzdata_2019a-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unixodbc-dev_2.3.6-0.1build1 util-linux_2.33.1-0.1ubuntu2 uuid-dev_2.33.1-0.1ubuntu2 voro++-dev_0.4.6+dfsg1-3 vtk6_6.3.0+dfsg2-2build6 x11-common_1:7.7+19ubuntu12 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-scrnsaver-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xkb-data_2.23.1-1ubuntu1.18.10.1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 zlib1g-dev_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Mar 8 06:59:52 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc dpkg-source: info: extracting lammps in lammps-0~20181211.gitad1b1897d+dfsg1 dpkg-source: info: unpacking lammps_0~20181211.gitad1b1897d+dfsg1.orig.tar.xz dpkg-source: info: unpacking lammps_0~20181211.gitad1b1897d+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_enable_spglib.patch dpkg-source: info: applying 20_set_potentials_path.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16615695 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16615695 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16615695 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20181211.gitad1b1897d+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_clean rm -rf /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build make[1]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1' dh_autoreconf_clean -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_clean -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build debian/rules build-arch dh build-arch --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build dh_update_autotools_config -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_autoreconf -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_configure -- \ -DPKG_ASPHERE=ON \ -DPKG_BODY=ON \ -DPKG_CLASS2=ON \ -DPKG_COLLOID=ON \ -DPKG_COMPRESS=ON \ -DPKG_CORESHELL=ON \ -DPKG_DIPOLE=ON \ -DPKG_GPU=ON \ -DPKG_GRANULAR=ON \ -DPKG_KIM=OFF \ -DPKG_KSPACE=ON \ -DPKG_MANYBODY=ON \ -DPKG_MC=ON \ -DPKG_MEAM=ON \ -DPKG_MISC=ON \ -DPKG_MOLECULE=ON \ -DPKG_MPIIO=ON \ -DPKG_OPT=ON \ -DPKG_PERI=ON \ -DPKG_POEMS=ON \ -DPKG_PYTHON=ON \ -DPKG_QEQ=ON \ -DPKG_REAX=OFF \ -DPKG_REPLICA=ON \ -DPKG_RIGID=ON \ -DPKG_SHOCK=ON \ -DPKG_SNAP=ON \ -DPKG_SRD=ON \ -DPKG_USER-ATC=ON \ -DPKG_USER-AWPMD=ON \ -DPKG_USER-BOCS=ON \ -DPKG_USER-CGDNA=ON \ -DPKG_USER-CGSDK=ON \ -DPKG_USER-DIFFRACTION=ON \ -DPKG_USER-DPD=ON \ -DPKG_USER-DRUDE=ON \ -DPKG_USER-EFF=ON \ -DPKG_USER-FEP=ON \ -DPKG_USER-H5MD=ON \ -DPKG_USER-LB=ON \ -DPKG_USER-MANIFOLD=ON \ -DPKG_USER-MEAMC=ON \ -DPKG_USER-MESO=ON \ -DPKG_USER-MGPT=ON \ -DPKG_USER-MISC=ON \ -DPKG_USER-MOFFF=ON \ -DPKG_USER-MOLFILE=ON \ -DPKG_USER-NETCDF=ON \ -DPKG_USER-OMP=ON \ -DPKG_USER-PHONON=ON \ -DPKG_USER-QTB=ON \ -DPKG_USER-REAXC=OFF \ -DPKG_USER-SMD=ON \ -DPKG_USER-SMTBQ=ON \ -DPKG_USER-SPH=ON \ -DPKG_USER-TALLY=ON \ -DPKG_USER-UEF=ON \ -DPKG_USER-VTK=ON \ -DPKG_VORONOI=ON cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DPKG_ASPHERE=ON -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_DIPOLE=ON -DPKG_GPU=ON -DPKG_GRANULAR=ON -DPKG_KIM=OFF -DPKG_KSPACE=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_MPIIO=ON -DPKG_OPT=ON -DPKG_PERI=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_REAX=OFF -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SNAP=ON -DPKG_SRD=ON -DPKG_USER-ATC=ON -DPKG_USER-AWPMD=ON -DPKG_USER-BOCS=ON -DPKG_USER-CGDNA=ON -DPKG_USER-CGSDK=ON -DPKG_USER-DIFFRACTION=ON -DPKG_USER-DPD=ON -DPKG_USER-DRUDE=ON -DPKG_USER-EFF=ON -DPKG_USER-FEP=ON -DPKG_USER-H5MD=ON -DPKG_USER-LB=ON -DPKG_USER-MANIFOLD=ON -DPKG_USER-MEAMC=ON -DPKG_USER-MESO=ON -DPKG_USER-MGPT=ON -DPKG_USER-MISC=ON -DPKG_USER-MOFFF=ON -DPKG_USER-MOLFILE=ON -DPKG_USER-NETCDF=ON -DPKG_USER-OMP=ON -DPKG_USER-PHONON=ON -DPKG_USER-QTB=ON -DPKG_USER-REAXC=OFF -DPKG_USER-SMD=ON -DPKG_USER-SMTBQ=ON -DPKG_USER-SPH=ON -DPKG_USER-TALLY=ON -DPKG_USER-UEF=ON -DPKG_USER-VTK=ON -DPKG_VORONOI=ON ../../cmake -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Running check for auto-generated files from make-based build system -- The Fortran compiler identification is GNU 8.3.0 -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- The C compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI_Fortran: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found PythonInterp: /usr/bin/python (found version "2.7.16") -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so (found version "2.7.16") -- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "80") -- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.36") -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Found GZIP: /bin/gzip -- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) -- Found VORO: /usr/lib/arm-linux-gnueabihf/libvoro++.so -- Found NetCDF: /usr/lib/arm-linux-gnueabihf/libnetcdf.so -- The imported target "vtkRenderingPythonTkWidgets" references the file "/usr/lib/arm-linux-gnueabihf/libvtkRenderingPythonTkWidgets.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtk" references the file "/usr/bin/vtk" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- Looking for C++ include math.h -- Looking for C++ include math.h - found -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.4") -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib/arm-linux-gnueabihf/libOpenCL.so (found version "2.2") Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/atom_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/beck_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_long_cs_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_wolf_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_wolf_cs_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/buck_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/buck_coul_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/buck_coul_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/charmm_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/colloid_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_debye_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_dsf_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_long_cs_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/device_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dipole_lj_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dipole_lj_sf_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dipole_long_lj_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dpd_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/eam_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/ellipsoid_nbor_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/gauss_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj96_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_class2_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_debye_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_msm_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_cubic_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_dsf_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_expand_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_expand_coul_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_gromacs_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_sdk_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_sdk_long_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/mie_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/morse_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/neighbor_cpu_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/neighbor_gpu_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/pppm_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/re_squared_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/re_squared_lj_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/soft_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/sw_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/table_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/tersoff_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/tersoff_mod_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/tersoff_zbl_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/ufm_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/vashishta_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/yukawa_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/yukawa_colloid_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/zbl_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/gayberne_cl.h... Creating /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/gayberne_lj_cl.h... -- Generating style_angle.h... -- Generating style_atom.h... -- Generating style_body.h... -- Generating style_bond.h... -- Generating style_command.h... -- Generating style_compute.h... -- Generating style_dihedral.h... -- Generating style_dump.h... -- Generating style_fix.h... -- Generating style_improper.h... -- Generating style_integrate.h... -- Generating style_kspace.h... -- Generating style_minimize.h... -- Generating style_nbin.h... -- Generating style_npair.h... -- Generating style_nstencil.h... -- Generating style_ntopo.h... -- Generating style_pair.h... -- Generating style_reader.h... -- Generating style_region.h... -- Generating lmpinstalledpkgs.h... -- Building package: ASPHERE -- Building package: BODY -- Building package: CLASS2 -- Building package: COLLOID -- Building package: COMPRESS -- Building package: DIPOLE -- Building package: GRANULAR -- Building package: KSPACE -- Building package: MANYBODY -- Building package: MC -- Building package: MEAM -- Building package: MISC -- Building package: MOLECULE -- Building package: PERI -- Building package: REPLICA -- Building package: RIGID -- Building package: SHOCK -- Building package: SNAP -- Building package: SRD -- Building package: PYTHON -- Building package: MPIIO -- Building package: VORONOI -- Building package: POEMS -- Building package: USER-ATC -- Building package: USER-AWPMD -- Building package: USER-BOCS -- Building package: USER-CGDNA -- Building package: USER-MESO -- Building package: USER-CGSDK -- Building package: USER-DIFFRACTION -- Building package: USER-DPD -- Building package: USER-DRUDE -- Building package: USER-EFF -- Building package: USER-FEP -- Building package: USER-H5MD -- Building package: USER-LB -- Building package: USER-MANIFOLD -- Building package: USER-MEAMC -- Building package: USER-MGPT -- Building package: USER-MISC -- Building package: USER-MOFFF -- Building package: USER-MOLFILE -- Building package: USER-NETCDF -- Building package: USER-PHONON -- Building package: USER-QTB -- Building package: USER-SMD -- Building package: USER-SMTBQ -- Building package: USER-SPH -- Building package: USER-TALLY -- Building package: USER-UEF -- Building package: USER-VTK -- Building package: USER-OMP -- Building package: OPT -- Building package: GPU -- Building package: CORESHELL -- Building package: QEQ -- The following packages have been found: * MPI * OpenMP * PkgConfig * FFTW3 * LAPACK * Threads * BLAS * PythonInterp * PythonLibs * JPEG * PNG * VORO * NetCDF * Eigen3 * VTK * ZLIB * HDF5 * OpenCL -- <<< Build configuration >>> Build type None Install path /usr Compilers and Flags: C++ Compiler /usr/bin/c++ Type GNU Version 8.3.0 C++ Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp Defines LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;vtkFiltersFlowPaths_AUTOINIT=1(vtkFiltersParallelFlowPaths);vtkIOExodus_AUTOINIT=1(vtkIOParallelExodus);vtkIOGeometry_AUTOINIT=1(vtkIOMPIParallel);vtkIOImage_AUTOINIT=1(vtkIOMPIImage);vtkIOParallel_AUTOINIT=1(vtkIOMPIParallel);vtkIOSQL_AUTOINIT=2(vtkIOMySQL,vtkIOPostgreSQL);vtkRenderingContext2D_AUTOINIT=1(vtkRenderingContextOpenGL);vtkRenderingCore_AUTOINIT=3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL);vtkRenderingFreeType_AUTOINIT=2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib);vtkRenderingLIC_AUTOINIT=1(vtkRenderingParallelLIC);vtkRenderingVolume_AUTOINIT=1(vtkRenderingVolumeOpenGL);LAMMPS_VTK;LMP_MPIIO;LMP_USER_OMP -- Fortran Compiler /usr/bin/gfortran Type GNU Version 8.3.0 Fortran Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -- C Compiler /usr/bin/cc Type GNU Version 8.3.0 C Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -- Linker flags: Executable -Wl,-Bsymbolic-functions -Wl,-z,relro -- Static libraries -- Link libraries: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so;/usr/lib/arm-linux-gnueabihf/libfftw3.so;/usr/lib/arm-linux-gnueabihf/libpython2.7.so;/usr/lib/arm-linux-gnueabihf/libjpeg.so;/usr/lib/arm-linux-gnueabihf/libpng.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libvoro++.so;molfile;/usr/lib/arm-linux-gnueabihf/libnetcdf.so;vtkChartsCore;vtkCommonColor;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkInfovisCore;vtkFiltersExtraction;vtkCommonExecutionModel;vtkFiltersCore;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/arm-linux-gnueabihf/libfreetype.so;vtkftgl;vtkDICOMParser;vtkDomainsChemistry;vtkIOXML;vtkIOGeometry;vtkIOCore;vtkIOXMLParser;/usr/lib/arm-linux-gnueabihf/libexpat.so;vtkFiltersAMR;vtkParallelCore;vtkIOLegacy;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelFlowPaths;vtkParallelMPI;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersPython;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkIOImage;vtkmetaio;/usr/lib/arm-linux-gnueabihf/libtiff.so;vtkInfovisBoostGraphAlgorithms;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingVolume;vtkViewsCore;/usr/lib/arm-linux-gnueabihf/libproj.so;vtkIOAMR;/usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/arm-linux-gnueabihf/libnetcdf_c++.so;vtkIOExport;vtkRenderingGL2PS;vtkRenderingContextOpenGL;vtkRenderingOpenGL;/usr/lib/arm-linux-gnueabihf/libgl2ps.so;vtkRenderingLabel;vtkIOFFMPEG;vtkIOMovie;/usr/lib/arm-linux-gnueabihf/libtheoraenc.so;/usr/lib/arm-linux-gnueabihf/libtheoradec.so;/usr/lib/arm-linux-gnueabihf/libogg.so;vtkIOGDAL;vtkIOGeoJSON;vtkIOImport;vtkIOInfovis;/usr/lib/arm-linux-gnueabihf/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;/usr/lib/arm-linux-gnueabihf/libjsoncpp.so;vtkIOMySQL;vtkIOSQL;sqlite3;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava;m;meam;poems;atc;awpmd;h5md;gpu;gfortran;gcc_s;gcc;c -- Using mpi with headers in /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi;/usr/lib/arm-linux-gnueabihf/openmpi/include and /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so -- GPU Api: OPENCL -- OCL Tune: GENERIC -- GPU Precision: MIXED -- Using FFTW3 as FFT -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build make[1]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_build -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build cd debian/build && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= Scanning dependencies of target awpmd make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/awpmd.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o Scanning dependencies of target poems /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp" Scanning dependencies of target atc make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp" Scanning dependencies of target gpu make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp" [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatmap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatmap.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatrix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatrix.cpp" [ 0%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp" [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fastmatrixops.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fastmatrixops.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fastmatrixops.cpp" [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fixedpoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp" [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/freebodyjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/freebodyjoint.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/freebodyjoint.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 0%] Building CXX object CMakeFiles/awpmd.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp" [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/inertialframe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat6x6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat6x6.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat6x6.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrix.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrixfun.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrixfun.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrixfun.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mixedjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mixedjoint.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mixedjoint.cpp" /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {WavePacket}; _Tp = WavePacket; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onbody.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onbody.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onbody.cpp" [ 1%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onfunctions.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onfunctions.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onfunctions.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/point.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/point.cpp" [ 2%] Linking CXX static library libawpmd.a /usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 /usr/bin/ar qc libawpmd.a "CMakeFiles/awpmd.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" /usr/bin/ranlib libawpmd.a make[3]: Leaving directory 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp" [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rigidbody.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rigidbody.cpp" [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F.o" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp" [ 4%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_global.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp" Scanning dependencies of target h5md make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 4%] Building C object CMakeFiles/h5md.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/src/ch5md.c.o /usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/h5md.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/src/ch5md.c.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/src/ch5md.c" [ 4%] Linking C static library libh5md.a /usr/bin/cmake -P CMakeFiles/h5md.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1 /usr/bin/ar qc libh5md.a "CMakeFiles/h5md.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/src/ch5md.c.o" /usr/bin/ranlib libh5md.a make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 4%] Built target h5md make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= Scanning dependencies of target ocl_get_devices make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 4%] Building CXX object CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/system.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/system.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/system.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void ucl_opencl::UCL_Device::add_properties(cl_device_id)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp" [ 4%] Linking CXX executable ocl_get_devices /usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic "CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -o ocl_get_devices -lOpenCL [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect3.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect3.cpp" make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 4%] Built target ocl_get_devices [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect4.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect4.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect4.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.cpp" [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp" [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::add(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void ucl_opencl::UCL_Device::add_properties(cl_device_id)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp" In file included from /usr/include/c++/8/set:60, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, double> >; _KeyOfValue = std::_Select1st, double> > >; _Compare = std::less; _Alloc = std::allocator, double> > >]’: /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_map.h: In member function ‘virtual void ATC::ChargeRegulatorMethodEffectiveCharge::initialize()’: /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:60, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, double> >; _KeyOfValue = std::_Select1st, double> > >; _Compare = std::less; _Alloc = std::allocator, double> > >]’: /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/map:61, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_map.h: In member function ‘void ATC::ExtrinsicModelElectrostatic::add_charged_surface(const string&, double)’: /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp:2: /usr/include/c++/8/bits/stl_vector.h: In member function ‘virtual void ATC::FE_Rectangular3DMesh::partition_mesh()’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function ‘virtual void ATC::FE_Uniform3DMesh::partition_mesh()’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, std::pair)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ /usr/include/c++/8/bits/stl_algo.h: In member function ‘int ATC::GhostModifierDampedHarmonicLayers::find_layers()’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp" [ 12%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]’: /usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In constructor ‘KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return __find_if(__first, __last, __pred, ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return __find_if(__first, __last, __pred, ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/vector.tcc: In static member function ‘static KD_Tree* KD_Tree::create_KD_tree(int, int, const DENS_MAT*, int, const ATC_matrix::Array2D&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp" [ 12%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp" [ 12%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MPI_Wrappers.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MPI_Wrappers.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MPI_Wrappers.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp" In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp" [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp: In member function ‘void ATC::OutputManager::read_restart_file(std::__cxx11::string, ATC::RESTART_LIST*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&myVal,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp:18: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:5: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp" In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:5: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void ATC::OutputManager::write_data(double, ATC::OUTPUT_LIST*, const int*)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_kernel.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp" In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Stress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Stress.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Stress.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeFilter.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeFilter.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeFilter.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp:26: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp:22: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.h:4, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.h:19, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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"CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o" "CMakeFiles/gpu.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o" In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ranlib libgpu.a [ 18%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 18%] Built target gpu [ 18%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp" [ 18%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:8, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:11, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:11, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:11, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationMomentum.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationMomentum.cpp" [ 18%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:338:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:347:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:350:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_map.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_map.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp: In member function ‘virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_body.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_body.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_charge.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_hybrid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_hybrid.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_line.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_sphere.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_sphere.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/body.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/body.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:339:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:348:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:351:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/change_box.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/change_box.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/change_box.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp: In member function ‘virtual void LAMMPS_NS::BondZero::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_brick.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_brick.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_brick.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_tiled.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_tiled.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_adf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_angle.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_angle.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_angle_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_angle_local.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_angmom_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_angmom_chunk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_angmom_chunk.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_bond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_cluster_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_cluster_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_cna_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_contact_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_contact_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_coord_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dihedral_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dipole_chunk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_dipole_chunk.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_displace_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_displace_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_displace_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_erotate_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_erotate_sphere_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_erotate_sphere_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_fragment_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_group_group.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_group_group.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_gyration.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_gyration_chunk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_gyration_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_heat_flux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_heat_flux.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_heat_flux.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_hexorder_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_ke.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_ke.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_ke_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_msd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_msd.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_msd_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_msd_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_omega_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_omega_chunk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_omega_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_orientorder_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pair_local.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pair_local.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pressure.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_chunk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_chunk.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_local.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_local.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_rdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_rdf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_rdf.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_region.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_region.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_slice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_profile.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_profile.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_ramp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_vacf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_vacf.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_vcm_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/create_atoms.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/create_atoms.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/create_bonds.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/create_bonds.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/create_box.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/create_box.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/create_box.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/delete_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/deprecated.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/deprecated.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_deprecated.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_deprecated.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_zero.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_zero.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/displace_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/displace_atoms.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/displace_atoms.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:323:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:335:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_atom.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_cfg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_cfg.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_cfg.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_custom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_deprecated.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_deprecated.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_image.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_image.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_local.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_local.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_movie.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_movie.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_movie.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/error.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/error.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/finish.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_adapt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_adapt.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_addforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_addforce.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_addforce.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp: In member function ‘virtual void LAMMPS_NS::FixAveChunk::end_of_step()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp:1057:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp:537:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHisto::end_of_step()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deprecated.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deprecated.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_drag.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_dt_reset.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_dt_reset.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_enforce2d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_enforce2d.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_external.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_external.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_external.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_gravity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_halt.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_halt.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_heat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_indent.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_indent.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_langevin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_langevin.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_lineforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_lineforce.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_lineforce.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_minimize.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_move.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_move.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_neigh_history.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_neigh_history.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nh.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nh.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nh_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nh_sphere.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nh_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nph_sphere.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nph_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt_sphere.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nve.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nve_limit.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nve_limit.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nve_noforce.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nve_noforce.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nve_noforce.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nve_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nvt.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nvt.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_nvt_sllod.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_planeforce.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_planeforce.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_press_berendsen.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_press_berendsen.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_print.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_print.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_print.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_property_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_recenter.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_recenter.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_respa.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_restrain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_restrain.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_restrain.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_setforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_spring_chunk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_spring_chunk.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_spring_rg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_spring_self.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_spring_self.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store_force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store_state.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store_state.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_berendsen.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_berendsen.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_csld.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_csld.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_csld.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_csvr.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_rescale.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_rescale.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_tmd.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_tmd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_tmd.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_vector.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_lj93.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_lj93.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_reflect.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_reflect.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_region.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_region.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/image.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/image.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/image.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp: In member function ‘void LAMMPS_NS::Group::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:730:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&ngroup,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:742:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:746:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(names[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_neigh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_neigh.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_deprecated.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:320:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:329:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/integrate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/integrate.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/integrate.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace_deprecated.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace_deprecated.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/lammps.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/lammps.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/lammps.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/lattice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/lattice.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/lattice.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/library.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/library.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/library.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/math_extra.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/math_special.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/math_special.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/memory.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_cg.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_cg.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_fire.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_fire.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_fire.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_hftn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_hftn.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_hftn.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_linesearch.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_quickmin.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_quickmin.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_sd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_sd.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/minimize.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/minimize.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/minimize.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/molecule.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/molecule.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/molecule.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin_standard.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin_standard.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin_standard.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_list.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_list.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_list.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp: In member function ‘int LAMMPS_NS::Modify::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1368:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1385:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1388:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1391:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1394:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1397:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1400:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1410:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1427:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1430:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1433:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1436:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1439:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neighbor.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neighbor.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/neighbor.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin_atomonly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin_ghost.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin_ghost.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_multi.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_nsq.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_nsq.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_nsq_ghost.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_nsq_ghost.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_nsq_ghost.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_atomonly_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newtoff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newtoff.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newtoff_ghost.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newton.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newton.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newton_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newton_tri.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_newton_tri.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_multi_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_respa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_respa.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_size.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_size_off2on.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_size_off2on.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_size_off2on_oneside.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_full_bin_2d.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_full_bin_2d.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_full_bin_3d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_multi_2d_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_multi_3d_newtoff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_multi_3d_newtoff.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_multi_3d_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_angle_all.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_angle_partial.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_angle_partial.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_angle_template.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_angle_template.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_bond_all.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_bond_all.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_bond_all.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_bond_partial.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_improper_all.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_improper_all.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_improper_partial.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp: In member function ‘virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:282:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:286:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&AA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&BB[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&beta[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp: In member function ‘virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function ‘virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:334:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:338:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:339:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:340:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:341:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:342:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:343:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function ‘virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:374:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:376:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:377:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:375:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:410:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:312:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:317:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:349:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:350:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:351:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:369:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:406:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:249:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:252:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:276:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:277:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:278:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:366:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:406:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:153:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:154:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:155:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:156:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:257:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:282:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:283:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:284:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:254:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:278:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:279:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp: In member function ‘virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:319:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:323:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:324:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:325:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp: In member function ‘virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:356:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:234:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:238:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:239:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:267:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_start,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:268:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_stop,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:269:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:270:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:271:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp: In member function ‘virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:285:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp: In member function ‘virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:318:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:319:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:668:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:685:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:688:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:694:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:698:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_lj[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:701:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:705:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_coul[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:612:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:616:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:617:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:618:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:647:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:648:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:649:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:650:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:283:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:317:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:606:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:610:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:611:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:612:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:641:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:642:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:643:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:644:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:357:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:362:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:363:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:175:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:176:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:177:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:178:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:380:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:384:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:416:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:375:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:379:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:380:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:381:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:412:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:413:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:414:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:415:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:416:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:328:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:332:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:333:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:334:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:335:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:364:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:365:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:366:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:367:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:345:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:349:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:350:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:351:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:352:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:383:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:422:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:356:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:360:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:362:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:363:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:287:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:292:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:293:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:633:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:637:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:638:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:639:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamR[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:640:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:641:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:672:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:673:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:674:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:675:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function ‘virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:269:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:273:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:274:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:275:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:276:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function ‘virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:304:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:305:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:306:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:250:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:254:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&prefactor[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:255:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp: In member function ‘void LAMMPS_NS::PairTable::read_table(LAMMPS_NS::PairTable::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:378:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:380:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:381:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:415:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp: In member function ‘virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:977:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:978:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:979:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewaldflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:980:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&pppmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:981:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&msmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:982:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dispersionflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:983:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tip4pflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp: In member function ‘virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:290:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:294:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:295:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:296:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp: In member function ‘virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp: In member function ‘virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:256:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:260:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:261:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp: In member function ‘virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:288:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:289:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:291:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function ‘virtual void LAMMPS_NS::PairZero::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:176:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:180:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function ‘virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:205:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:206:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&coeffflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_data.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_data.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_data.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_dump.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_dump.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_dump.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::command(int, char**)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:304:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:308:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:311:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:315:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:321:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:381:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:384:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:393:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:397:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:403:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::file_layout()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1091:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(all_written_send_sizes,sizeof(int),nprocs_file,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function ‘char* LAMMPS_NS::ReadRestart::read_string()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1273:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(value,sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1285:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(int),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1296:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_native.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_native.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_native.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_xyz.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_xyz.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_block.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_block.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cone.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cylinder.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_cylinder.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_plane.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_plane.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_prism.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_prism.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_prism.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_sphere.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_sphere.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_union.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_union.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_union.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/replicate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/replicate.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/replicate.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/rerun.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/rerun.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/rerun.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/reset_ids.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/respa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/respa.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/run.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/run.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/run.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/set.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/set.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/set.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/special.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/thermo.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/thermo.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/timer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/timer.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/timer.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/universe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/update.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/update.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp: In member function ‘int LAMMPS_NS::Variable::next(int, char**)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp:681:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&nextindex); ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp: In member function ‘void LAMMPS_NS::WriteCoeff::command(int, char**)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:115:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // coeff ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:126:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:138:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:157:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // gobble up one more empty line ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:158:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:168:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nve_asphere.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nve_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_line_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_tri_lj.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function ‘virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:467:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:470:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:474:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:478:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:479:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:480:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function ‘virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:512:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&upsilon,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:516:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:517:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function ‘virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:445:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:448:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:452:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:456:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:457:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:458:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function ‘virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:486:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:487:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_rounded_polygon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_rounded_polyhedron.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_rounded_polyhedron.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_body_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_body_local.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_body_local.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/compute_temp_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nh_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nph_body.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nph_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_npt_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nve_body.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nve_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nvt_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nvt_body.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polygon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polygon.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polygon.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/pair_body_nparticle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:376:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:377:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:378:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:379:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:381:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:388:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp: In member function ‘virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:187:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:188:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:189:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:190:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp: In member function ‘virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:843:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:844:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:845:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:847:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:848:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:849:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:850:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:852:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:853:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:854:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:855:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:857:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:858:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:859:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:860:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:862:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:863:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:864:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:865:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:867:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:868:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:869:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:870:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:872:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:873:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:876:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:877:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:878:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp: In member function ‘virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:609:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:610:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:612:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:613:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:614:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:615:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:616:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:617:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:310:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:314:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:315:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:345:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:346:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:347:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:364:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:368:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:369:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:404:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:406:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:410:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:411:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:412:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:446:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:447:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:448:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:610:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:614:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:615:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:650:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:651:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:652:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:653:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:654:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:655:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_target, sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:656:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed, sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:657:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:658:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:659:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:660:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp: In member function ‘virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:401:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:405:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a12[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:406:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:407:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp: In member function ‘virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:439:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:440:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:441:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:690:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:694:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:695:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:728:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:729:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:730:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:731:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:732:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:733:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:734:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:735:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:736:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1917:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1921:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1922:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1954:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1955:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1956:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1957:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1958:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1959:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1960:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1961:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_atom_gz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_atom_gz.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_atom_gz.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_cfg_gz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_cfg_gz.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_cfg_gz.cpp" [ 47%] Building CXX object 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:441:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:445:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:446:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:447:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:448:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:479:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:480:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:532:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:351:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:355:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:356:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:357:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:388:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:389:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_pour.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_pour.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_pour.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function ‘virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:542:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function ‘virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:568:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kn,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:569:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kt,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:570:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamman,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:571:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gammat,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:572:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&xmu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:573:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dampflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/gridcomm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/gridcomm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/gridcomm.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF 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-I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function ‘virtual void LAMMPS_NS::FixTuneKspace::init()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:103:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); ^~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function ‘void LAMMPS_NS::FixTuneKspace::store_old_kspace_settings()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:214:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); ^~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function ‘virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:158:28: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:163:30: warning: ‘/msm’ directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/msm",base_pair_style); ^~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 24 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:148:28: warning: ‘/msm’ directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/msm",base_pair_style); ^~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 24 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:141:28: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:134:28: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:427:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:431:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:432:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:433:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:434:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:435:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:436:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:470:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:471:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:404:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:410:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:411:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:446:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:447:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:448:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:360:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_a_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:365:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_rho_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:366:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_c_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:367:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:399:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:404:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:297:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:300:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:329:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:330:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:830:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:834:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:835:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:836:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:837:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:869:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:870:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:871:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:872:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:873:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:875:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:904:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:905:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:906:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:907:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:939:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:940:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:941:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:942:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:943:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:944:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:945:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:804:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:805:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:806:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:837:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:838:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:839:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:541:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:360:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:365:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1552:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1559:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:366:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:399:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:479:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:480:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_tip4p.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_tip4p.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_tip4p.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap_wrap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap_wrap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap_wrap.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp: In member function ‘void LAMMPS_NS::PairADP::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:564:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:565:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:566:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:567:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:592:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:616:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp: In member function ‘void LAMMPS_NS::PairADP::grab(FILE*, int, double*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:928:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp: In member function ‘void LAMMPS_NS::PairAIREBO::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3385:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3391:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3393:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3397:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3399:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3401:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3403:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3407:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3409:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3411:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3413:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3415:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3417:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3419:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3421:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3423:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3425:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3429:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3431:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3433:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3435:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3437:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3439:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3441:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3443:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3445:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3447:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3449:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3451:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3453:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3455:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3457:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3459:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3461:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3463:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3465:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3467:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3469:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3471:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3475:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3477:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3482:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3484:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3486:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3490:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3492:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3494:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3496:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3498:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3502:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3506:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3508:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3510:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3512:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3514:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3516:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3518:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3520:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3522:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3527:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3529:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3531:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3533:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3535:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3537:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3539:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3541:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3543:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3550:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3551:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3552:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3556:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3560:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3563:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3566:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3570:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3573:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3580:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3581:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3582:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3584:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3588:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3592:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3596:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3603:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3604:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3605:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3612:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3616:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3621:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3629:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3630:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3631:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3632:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3637:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3641:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3646:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3654:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3655:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3656:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3658:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3663:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3667:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3673:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3682:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3683:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3684:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3686:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3691:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3695:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3701:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3710:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3711:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3712:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3714:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3719:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3723:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3729:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3738:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3739:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3740:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3742:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3747:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3751:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3757:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function ‘virtual void LAMMPS_NS::PairATM::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:313:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:316:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nu[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function ‘virtual void LAMMPS_NS::PairATM::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:341:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:342:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_triple,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp: In member function ‘void LAMMPS_NS::PairBOP::read_table(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4982:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4983:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4988:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5017:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5085:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5087:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5089:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5093:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5098:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5102:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5104:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5106:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5115:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5122:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5126:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5130:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5132:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5136:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5138:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5142:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5144:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5148:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5150:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5154:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5156:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5160:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5162:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5164:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5173:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5180:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5188:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5196:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5204:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5211:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5215:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5232:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp: In member function ‘void LAMMPS_NS::PairComb3::read_lib()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:326:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:350:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:358:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:366:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:375:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:384:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:391:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:404:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:422:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:431:19: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:446:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:464:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:473:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:488:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:506:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:515:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function ‘virtual void LAMMPS_NS::PairEAM::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:470:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:471:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function ‘void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:788:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:143:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:168:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:192:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFS::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:143:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:168:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:194:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp: In member function ‘int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:971:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:975:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp: In member function ‘void LAMMPS_NS::PairLCBOP::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:988:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:994:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:995:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:996:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&gamma_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:997:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&A); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:998:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:999:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1000:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&alpha); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1001:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1002:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1003:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&d); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1004:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1005:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_4); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1006:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_6); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1007:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&L); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1008:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&kappa); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1009:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_0); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1010:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1011:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_0); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1012:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1_LR); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1013:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2_LR); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1014:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1015:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1016:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1017:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1018:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1019:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1020:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1021:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&delta); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1024:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1033:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1040:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; } ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1047:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1053:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_rebo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_rebo.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_rebo.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function ‘virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:580:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:581:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] while (line == strchr(line,'#')) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:597:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:615:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:651:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function ‘void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:882:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_vashishta_table.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_vashishta_table.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_atom_swap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_atom_swap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_atom_swap.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_break.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_break.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_break.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_create.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_swap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_swap.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_gcmc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp: In member function ‘virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:350:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:354:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:355:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp: In member function ‘virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&max_cell_size,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_ti.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_ti.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_ti.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_deposit.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_deposit.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_efield.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_efield.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_efield.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_evaporate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_oneway.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_oneway.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_orient_bcc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_orient_bcc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_orient_fcc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_orient_fcc.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_orient_fcc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_thermal_conductivity.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_ttm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:323:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:327:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:328:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:329:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:330:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:331:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:361:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:362:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:363:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:364:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:374:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:378:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:379:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:380:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:381:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:383:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:415:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:416:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/xdr_compat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/xdr_compat.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/xdr_compat.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:421:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:425:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:426:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:427:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:428:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:429:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:462:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:463:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:464:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:465:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:466:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:467:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:468:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp: In member function ‘virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:249:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:250:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:251:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:252:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp:197:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:250:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:251:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:252:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:219:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp:219:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp: In member function ‘virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:292:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:293:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp: In member function ‘void LAMMPS_NS::AngleTable::read_table(LAMMPS_NS::AngleTable::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:385:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:387:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:388:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:394:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:403:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_template.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_template.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_template.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp: In member function ‘virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:221:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:222:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:223:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp: In member function ‘virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:229:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:230:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:231:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:232:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:233:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp: In member function ‘virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp: In member function ‘virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:176:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:177:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:178:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp: In member function ‘virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:171:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lamda[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp: In member function ‘virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:282:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:283:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:284:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rc[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:285:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&u0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function ‘virtual void LAMMPS_NS::BondTable::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function ‘void LAMMPS_NS::BondTable::read_table(LAMMPS_NS::BondTable::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:314:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:316:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:317:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:323:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:335:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:429:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:430:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:431:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:432:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:433:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp: In member function ‘virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp: In member function ‘virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:339:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:340:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:341:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp: In member function ‘virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:379:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:383:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:384:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:440:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:441:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:442:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf 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-I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:621:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:625:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:626:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:627:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:663:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:664:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:665:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:666:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:667:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:669:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:670:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:671:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:672:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:673:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:480:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:507:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:508:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:509:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:510:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:511:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp" [ 56%] Building CXX object 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:570:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:574:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:575:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:576:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:577:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:578:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:579:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_yieldstress[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:502:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:503:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:424:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:428:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kspring[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:429:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:430:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:431:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:552:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:556:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:557:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:558:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:559:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:560:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:561:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_lambdai[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:562:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_taubi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_tad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_tad.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_tad.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_global.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_global.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_local.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_local.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_neb.cpp.o 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_neb.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_neb.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/hyper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/hyper.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/neb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/neb.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/neb.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/prd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/prd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/prd.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/tad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/temper.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/temper.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/verlet_split.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/verlet_split.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/verlet_split.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_erotate_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_ke_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_ke_rigid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_ke_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_rigid_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_ehex.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_ehex.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rattle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rattle.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_nh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_nph.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_nph.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_nph_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt_small.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_nve.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_append_atoms.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_append_atoms.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_msst.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_msst.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_msst.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_nphug.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_nphug.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_nphug.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp: In member function ‘virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp:2604:24: warning: ‘%s’ directive output may be truncated writing up to 127 bytes into a region of size 93 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix rigid restart file %s",outfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp:15: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 36 and 163 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_wall_piston.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/compute_snav_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/compute_snav_atom.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/pair_snap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/sna.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/sna.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD/fix_srd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD/fix_srd.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD/fix_wall_srd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD/fix_wall_srd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD/fix_wall_srd.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON/fix_python_invoke.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON/pair_python.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON/pair_python.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON/python_impl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_atom_mpiio.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_atom_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_custom_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI/compute_voronoi_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI/compute_voronoi_atom.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS/fix_poems.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS/fix_poems.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS/fix_poems.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC/fix_atc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 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/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairAWPMDCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:604:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:607:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairAWPMDCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:631:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:632:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:633:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp" In file included from /usr/include/c++/8/vector:69, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:35: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:35: /usr/include/c++/8/bits/stl_vector.h: In member function ‘virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function ‘virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:296:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:297:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&Delta[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:298:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:833:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:838:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:839:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:840:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:841:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:842:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:843:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:844:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:845:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:846:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:848:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:849:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:850:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:851:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:852:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:854:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:855:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:856:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:857:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:858:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:860:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:861:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:862:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:863:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:864:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:866:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:867:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:868:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:869:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:870:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:872:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&AA_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:873:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&BB_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:937:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:938:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:939:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qeff_dh_pf[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:467:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:718:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:723:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:724:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:725:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:726:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:727:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:728:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:729:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:730:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:731:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:732:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:733:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:734:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:735:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:736:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:737:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:780:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:781:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:782:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:992:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1000:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1005:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1011:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1017:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1023:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1029:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1031:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1032:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1033:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1034:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1035:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1036:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1037:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1038:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1108:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1109:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1110:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:979:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:984:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:985:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:986:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:987:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:988:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:989:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:990:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:991:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:992:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:993:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:994:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1000:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1005:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1006:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1011:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1012:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1017:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1018:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1023:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1024:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1029:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1030:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1105:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1106:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1107:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:996:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1011:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1017:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1023:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1029:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1038:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1106:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:951:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:956:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_xst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:957:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:958:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:959:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:960:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:961:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:962:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:963:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:964:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:966:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:967:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:968:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:969:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:970:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:972:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:973:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:974:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:975:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:976:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:978:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:979:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:980:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:981:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:982:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:984:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:985:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:986:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:987:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:988:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:990:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:991:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:992:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:993:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:994:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1000:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1073:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1074:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp" [ 62%] Building CXX object 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_tdpd_source.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function ‘virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:458:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:462:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:463:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:464:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:465:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:466:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:467:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&powerT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:468:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cutT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:471:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:475:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function ‘virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:353:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:357:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&A_att[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:358:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&B_rep[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:359:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:360:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_r[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:391:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:392:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:401:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:405:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:406:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:407:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cutcc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:411:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:412:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:413:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&powercc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:450:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:451:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:452:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp: In member function ‘virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&repscale[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:385:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:390:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:391:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:392:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:422:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:423:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:425:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:476:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:480:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:481:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:482:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:483:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:516:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:517:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:518:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:520:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:521:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/atom_vec_dpd.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function ‘void LAMMPS_NS::FixSAEDVTK::invoke_vector(LAMMPS_NS::bigint)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:434:26: warning: ‘%s’ directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 31 and 158 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function ‘void LAMMPS_NS::FixSAEDVTK::options(int, char**)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:561:28: warning: ‘%s’ directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 31 and 158 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_cv.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_rx.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_rx.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_shardlow.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_shardlow.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_shardlow.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp: In member function ‘void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:216:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:218:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:219:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:225:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:237:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp: In member function ‘void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:435:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:437:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:438:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:444:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:472:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:474:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp" [ 64%] Building CXX object 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:382:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:483:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:487:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:488:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:489:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:490:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:520:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:521:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:522:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:974:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:978:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1004:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1005:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1006:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1007:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function ‘void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:366:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:368:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:369:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:375:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:388:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:390:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function ‘virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:709:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:710:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function ‘void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:513:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:514:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:520:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:533:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:535:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:854:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:502:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:504:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:540:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:541:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:542:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:543:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:544:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:545:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:546:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:547:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:548:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function ‘virtual void LAMMPS_NS::PairThole::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:316:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:322:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function ‘virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:352:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_langevin_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_langevin_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_langevin_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nh_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nh_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nh_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nph_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nph_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nph_eff.cpp" [ 66%] Building CXX object 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_npt_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_npt_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nve_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nvt_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nvt_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nvt_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_temp_rescale_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/fix_adapt_fep.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/fix_adapt_fep.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:970:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:973:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:997:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:998:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:999:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:277:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:281:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:282:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:311:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:312:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:314:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:315:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:316:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:301:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:305:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:843:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:847:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:848:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:849:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:850:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:851:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:886:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:887:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:888:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:890:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:891:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:892:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:893:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:894:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:426:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:805:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:806:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:847:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:848:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:526:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:527:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:528:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:531:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:532:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:533:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:534:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:535:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:317:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:322:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:323:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:324:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:325:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:462:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:463:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:464:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:465:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:466:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_pc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function ‘virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp:62:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(screen,"I have %ld parts. They are:\n", parts.size()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_init.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_force.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_force.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_funcs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_impl.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_impl.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_done.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_global.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_global.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_param.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/pair_meamc.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In member function ‘void potdata::readpot(const char*, const char*, double)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:187:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:246:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:306:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:329:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:331:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:343:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:345:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:358:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In function ‘void getparmindata(const char*, int*, double*, double*, double*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:109:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:123:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/pair_mgpt.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:228:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:229:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kcost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:230:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ksint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:231:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:260:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:261:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:262:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:263:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:264:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp: In member function ‘virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp:209:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp:210:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp: In member function ‘virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:235:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:238:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp: In member function ‘virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:241:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:242:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:243:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&N[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp: In member function ‘virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:238:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:239:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:181:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:182:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:183:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_cylinder.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_cylinder.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_stress_mop.cpp" [ 70%] Building CXX object 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp: In member function ‘virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:371:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:386:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(k[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:387:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(multiplicity[i],sizeof(int),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:388:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:332:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(a[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp: In member function ‘virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:759:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:779:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(Ccoeff[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:780:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:781:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:782:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:783:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:784:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:785:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:786:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:787:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:788:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function ‘virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1026:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1027:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function ‘void LAMMPS_NS::DihedralTable::read_table(LAMMPS_NS::DihedralTable::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1094:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1096:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1098:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1104:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function ‘virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1064:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1065:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1066:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1067:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1068:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1069:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1070:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1071:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1073:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1074:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function ‘void LAMMPS_NS::DihedralTableCut::read_table(LAMMPS_NS::DihedralTableCut::Table*, char*, char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1154:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1156:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1158:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1164:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp:506:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ffl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ffl.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ffl.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_filter_corotate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_filter_corotate.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_filter_corotate.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_flow_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_gle.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_gle.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_imd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ipi.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ipi.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_nvk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_nvk.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_pimd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_pimd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_pimd.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_rhok.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_rhok.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_rhok.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_smd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_srp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_srp.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ti_spring.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ti_spring.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp: In constructor ‘LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:123:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:124:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:128:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:129:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:133:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:134:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:138:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:139:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:143:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:144:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:148:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:149:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:153:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:154:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:158:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:159:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:163:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:164:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:168:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:169:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:173:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:174:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:178:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:179:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:183:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:184:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:188:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:189:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:193:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:194:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:198:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:199:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:203:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:204:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:208:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:209:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:213:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:214:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:218:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:219:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:224:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:228:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:229:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp: In member function ‘virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:307:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:308:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp: In member function ‘virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:253:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:254:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp: In member function ‘virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&all[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp: In member function ‘virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:345:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:349:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:350:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:351:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:352:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:381:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rme[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:317:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:318:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:319:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:305:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:306:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:309:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:313:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&hgauss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:314:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rmh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:315:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmah[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:345:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:346:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:347:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:314:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:835:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:839:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:840:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:841:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:842:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:875:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:876:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:877:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:878:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:879:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:880:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:490:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:494:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:495:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:496:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:497:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:498:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:527:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:528:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSpline::read_file(const char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:449:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:455:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:485:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:649:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:652:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:658:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:665:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:669:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:475:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:607:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:613:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:619:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:278:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp: In member function ‘virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:312:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:317:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:283:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:284:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:285:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rr[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:312:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:313:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp: In member function ‘virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:356:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:357:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_npt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_npt.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_npt.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp: In member function ‘virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:703:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:708:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:709:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp: In member function ‘virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:737:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:738:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bptype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:739:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&btype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:740:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&min,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:741:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&midpoint,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:742:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&exclude,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:389:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:390:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:391:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:392:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k5[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k6[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&th0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:420:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:424:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:425:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:426:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:427:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:428:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:429:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:462:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:463:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:464:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:465:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:466:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:467:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:453:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:457:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:458:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:459:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:460:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:461:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:462:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:496:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:497:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&coul_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:498:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:499:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:500:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:501:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:502:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON/fix_phonon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON/fix_phonon.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON/fix_phonon.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB/fix_qbmsst.cpp.o 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB/fix_qbmsst.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB/fix_qbmsst.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB/fix_qtb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/atom_vec_smd.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/atom_vec_smd.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_damage.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_rho.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_rho.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_rho.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/fix_smd_setvel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/pair_smd_hertz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/smd_material_models.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/smd_material_models.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp: In member function ‘virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:420:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:423:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:476:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:480:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:497:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:515:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:529:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:552:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:555:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:608:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:620:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:642:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:655:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:662:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:682:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:685:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:695:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:706:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:709:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:714:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:722:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:725:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:732:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:735:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:745:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:748:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:753:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:779:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:782:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:790:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:800:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/atom_vec_meso.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 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-D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso_stationary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso_stationary.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/fix_meso_stationary.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_lj.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_lj.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/compute_pressure_uef.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/compute_pressure_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/compute_temp_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/compute_temp_uef.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/compute_temp_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/dump_cfg_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nh_uef.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nh_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_npt_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nvt_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/uef_utils.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/uef_utils.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/uef_utils.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK/dump_vtk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL/compute_temp_cs.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL/compute_temp_cs.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_dynamic.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_dynamic.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_fire.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_fire.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_point.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_point.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_point.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_shielded.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/thr_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/thr_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nh_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nh_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nh_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/domain_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/domain_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_class2_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_charmm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_charmm_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_charmm_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_morse_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nph_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nph_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nph_sphere_omp.cpp.o [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_npt_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_npt_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_npt_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nve_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nvt_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nvt_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nvt_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/improper_cossq_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/improper_cossq_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/improper_cossq_omp.cpp" [ 85%] Building CXX object 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/respa_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/respa_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/ewald_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/ewald_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/ewald_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/msm_cg_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/msm_cg_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_cg_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_born_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_ufm_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_ufm_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_zbl_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_colloid_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_colloid_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_colloid_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lubricate_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_comb_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_comb_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_comb_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:187:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:189:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tip4p_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_soft_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_morse_smooth_linear_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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[ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_lj_cut_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_lj_cut_opt.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_lj_cut_opt.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_morse_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_eam_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT/pair_eam_alloy_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pppm_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pppm_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_beck_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_beck_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_buck_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_dpd_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_expand_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_expand_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_mie_cut_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_mie_cut_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_morse_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_morse_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_morse_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_soft_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_soft_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_soft_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_table_gpu.cpp.o 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-I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_table_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_table_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_ufm_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_yukawa_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_yukawa_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_zbl_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_zbl_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_zbl_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_gayberne_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_gayberne_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_gayberne_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_resquared_gpu.cpp.o 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_colloid_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_colloid_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_yukawa_colloid_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_buck_coul_long_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_buck_coul_long_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_long_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_long_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp" /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:377:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:378:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:379:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:380:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:425:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)’: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:377:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:378:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:379:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:380:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:427:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_vashishta_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_vashishta_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-fdebug-prefix-map=/<>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp.o" -c "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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/usr/lib/arm-linux-gnueabihf/libvtkIOMPIImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOMPIParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIONetCDF-6.3.so.6.3.0 -ljsoncpp /usr/lib/arm-linux-gnueabihf/libvtkIOMySQL-6.3.so.6.3.0 -lsqlite3 /usr/lib/arm-linux-gnueabihf/libvtkIOODBC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOPLY-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelExodus-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelLSDyna-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelNetCDF-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelXML-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOPostgreSQL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOVPIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkVPIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOVideo-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOXdmf2-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkxdmf2-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingMath-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingMorphological-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingStatistics-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingStencil-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInteractionImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkLocalExample-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkParallelMPI4Py-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingExternal-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingFreeTypeFontConfig-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingLOD-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingMatplotlib-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingParallelLIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingVolumeAMR-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingVolumeOpenGL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkTestingGenericBridge-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkTestingIOSQL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkTestingRendering-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsContext2D-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsGeovis-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsInfovis-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkWrappingJava-6.3.so.6.3.0 -lm libmeam.a libpoems.a libatc.a libawpmd.a libh5md.a libgpu.a -lgfortran -lgcc_s -lgcc -lc /usr/lib/arm-linux-gnueabihf/libvtkFiltersFlowPaths-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOExodus-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkexoIIc-6.3.so.6.3.0 -lnetcdf -lnetcdf_c++ /usr/lib/arm-linux-gnueabihf/libvtkIOLSDyna-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so -lxml2 /usr/lib/arm-linux-gnueabihf/libvtkWrappingPython27Core-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkPythonInterpreter-6.3.so.6.3.0 -lpython2.7 /usr/lib/arm-linux-gnueabihf/libvtkFiltersParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkParallelMPI-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingLIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersAMR-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkParallelCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOLegacy-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingOpenGL-6.3.so.6.3.0 -lGLU -lSM -lICE -lX11 -lXext -lXt /usr/lib/arm-linux-gnueabihf/libvtkIOSQL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkGeovisCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOXML-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOGeometry-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOXMLParser-6.3.so.6.3.0 -lproj /usr/lib/arm-linux-gnueabihf/libvtkChartsCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingContext2D-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersImaging-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInfovisLayout-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInfovisCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInteractionWidgets-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersHybrid-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingGeneral-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingSources-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingHybrid-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkDICOMParser-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkmetaio-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInteractionStyle-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingAnnotation-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingColor-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingVolume-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingLabel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingFreeType-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkalglib-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonExecutionModel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonComputationalGeometry-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonDataModel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonMisc-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonTransforms-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonMath-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonSystem-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtksys-6.3.so.6.3.0 -ldl /usr/lib/arm-linux-gnueabihf/libvtkftgl-6.3.so.6.3.0 -lfreetype -lGL /usr/lib/arm-linux-gnueabihf/libvtkCommonCore-6.3.so.6.3.0 -llapack -lblas /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lz -lsz -ldl -lm -lOpenCL -lgfortran make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [100%] Built target lmp make[2]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" 0 make[1]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1' mkdir test; cp examples/crack/* test/ cd test; /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/lmp < in.crack -------------------------------------------------------------------------- [[65080,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) Host: bos02-arm64-012 Another transport will be used instead, although this may result in lower performance. NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- LAMMPS (12 Dec 2018) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:87) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.11428 1.92998 1.11428 Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 1 by 1 by 1 MPI processor grid Created 8141 atoms Time spent = 0.0041063 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary 7537 atoms in group mobile 841 atoms in group leftupper 841 atoms in group leftlower Setting atom values ... 841 settings made for type Setting atom values ... 841 settings made for type Setting atom values ... 302 settings made for type Setting atom values ... 302 settings made for type WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:488) Neighbor list info ... update every 1 steps, delay 5 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 80 56 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/2d/newton bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.003 Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 Loop time of 21.8607 on 1 procs for 5000 steps with 8141 atoms Performance: 59284.464 tau/day, 228.721 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 17.905 | 17.905 | 17.905 | 0.0 | 81.90 Neigh | 0.86772 | 0.86772 | 0.86772 | 0.0 | 3.97 Comm | 0.045097 | 0.045097 | 0.045097 | 0.0 | 0.21 Output | 0.0049247 | 0.0049247 | 0.0049247 | 0.0 | 0.02 Modify | 2.3907 | 2.3907 | 2.3907 | 0.0 | 10.94 Other | | 0.6475 | | | 2.96 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 71389 ave 71389 max 71389 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 71389 Ave neighs/atom = 8.76907 Neighbor list builds = 100 Dangerous builds = 0 Total wall time: 0:00:21 rm -rf test make[1]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build dh_testroot -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_prep -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_auto_install -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build cd debian/build && make -j4 install DESTDIR=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/awpmd.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/poems.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= [ 1%] Built target awpmd make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 4%] Built target poems cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/meam.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/h5md.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 5%] Built target meam make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build [ 5%] Built target h5md make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/ocl_get_devices.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 5%] Built target ocl_get_devices make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/atc.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 10%] Built target atc make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/gpu.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 18%] Built target gpu make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/lmp.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build make[3]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/lmp.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [100%] Built target lmp make[2]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/bin/lmp -- Set runtime path of "/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/bin/lmp" to "" -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/man/man1/lmp.1 -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.TiO2 -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNCH-old.ILP -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN.sw -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.modc -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u6.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTeZnSeHgS0.sw -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/charmm36.cmap -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH_taper.KC -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1994.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Au_u3.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Pt_u3.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.cho -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.airebo -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlSiMgCuFe.meam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_jnp.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNC.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/charmm22.cmap -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snap -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.potin -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.gw.zbl -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_zhou.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC-full -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1997.vashishta -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BN.extep -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.potin -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.AuO -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/C.lcbop -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.KC -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1990.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_u3.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_prb.agni -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ci-reaxFF_ZBL.dat -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff.zbl -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/NiAlH_jea.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/WL.meam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.meam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.ci-reax.CH -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_Erhart-Albe.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/library.meam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.mod -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.eim -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_1.meam.spline -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.lg -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.bop.table -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1989.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.b.meam.sw.spline -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuNi.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/MOH.nb3b.harmonic -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/TiO.meam.spline -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_zhou.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/VFe_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.sw -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/lib.comb3 -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.sw -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.edip -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Pd_u3.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_mishin1.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.mattsson -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ti.meam.spline -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CoAl.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.README -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.parmin -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snapparam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiCGe.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuH.bop.table -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.ZnOH -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1994.vashishta -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/InP.vashishta -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/README -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuZr_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.README -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.README -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.adp -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa_eam.poly -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u3.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1990.vashishta -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/FeP_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.README -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapcoeff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/NiAlH_jea.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.Fe_O_C_H -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snapcoeff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.parmin -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/He_He_JW2013.table -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.bop.table -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al2O3 -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.gw -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_zhou.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/README.reax -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.streitz -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ti.meam.sw.spline -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.airebo-m -- 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/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.budzien -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.vashishta -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.AB -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa.eam.alloy -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mg_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.potin -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.potin -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/FeCr.cdeam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snap -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.parmin -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_smf7.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ag_u3.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN_tersoff.poly -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_jpc.agni -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.rdx -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Zr_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2_He_JW2013.snap -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CCu_v2.bop.table -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_smf7.eam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlFe_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Fe_mm.eam.fs -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_He_JW2013.table -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snap -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/GaAs.bop.table -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapparam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_2.meam.spline -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.FC -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.adp -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.meam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu.meam -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb3 -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNCH.ILP -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/etc/profile.d/lammps.sh -- Installing: /<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/etc/profile.d/lammps.csh make[1]: Leaving directory '/<>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' dh_install -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installdocs -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installchangelogs -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installexamples -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installman -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installinit -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_perl -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_link -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_strip_nondeterminism -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_compress -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_fixperms -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_missing -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_strip -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_makeshlibs -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_shlibdeps -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dpkg-shlibdeps: warning: debian/lammps/usr/bin/lmp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_gencontrol -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_md5sums -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_builddeb -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing lammps (in debian/lammps); do_strip: , oemstrip: pkgstriptranslations: processing lammps-dbgsym (in debian/.debhelper/lammps/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/lammps/DEBIAN/control, package lammps, directory debian/lammps pkgstripfiles: Truncating usr/share/doc/lammps/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/lammps/dbgsym-root/DEBIAN/control, package lammps-dbgsym, directory debian/.debhelper/lammps/dbgsym-root dpkg-deb: building package 'lammps-dbgsym' in 'debian/.debhelper/scratch-space/build-lammps/lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package lammps ... pkgstripfiles: No PNG files. dpkg-deb: building package 'lammps' in '../lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb'. Renaming lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb to lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190411-0935 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.changes: ----------------------------------------------------- Format: 1.8 Date: Fri, 08 Mar 2019 07:18:57 +0100 Source: lammps Binary: lammps Architecture: armhf Version: 0~20181211.gitad1b1897d+dfsg1-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: lammps - Molecular Dynamics Simulator Closes: 923466 Changes: lammps (0~20181211.gitad1b1897d+dfsg1-2) unstable; urgency=medium . * Team upload. * Build-Depends: gfortran Closes: #923466 Checksums-Sha1: 0b096c1a42de238e15661239eecedde1e85e43b5 77641792 lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.ddeb 21f9fabf21973142b47282e497962faba25a4dff 20702 lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.buildinfo 25888c4ebd4c0c67f3b07e796da3f60a32efe5d0 5088164 lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb Checksums-Sha256: 3c99aa2d8e7f37be7983c0ba7150a8db46b13be26a490397f0eebbf6436e293e 77641792 lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.ddeb b6bc56fe5324988572d2dea62b0bcf20d2fe9e22354f635b56ce9e4b9e1cd740 20702 lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.buildinfo ad16542dda6424b8ed4a74ae0a8eea29e8308ea1d29caa28a1521b22a6af83ec 5088164 lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb Files: 4f63ba57f0b6527e03b895658fc1e295 77641792 debug optional lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.ddeb 62bd106b6cebf2cbcc7526eb6f0a01c5 20702 science optional lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.buildinfo 135a8fddeee4677fa1045d5e4675e228 5088164 science optional lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb ------------------------------------------------ new debian package, version 2.0. size 5088164 bytes: control archive=1300 bytes. 1617 bytes, 23 lines control 327 bytes, 5 lines md5sums Package: lammps Version: 0~20181211.gitad1b1897d+dfsg1-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 17113 Depends: libblas3 | libblas.so.3, libc6 (>= 2.29), libfftw3-double3 (>= 3.3.5), libgcc1 (>= 1:4.0), libgfortran5 (>= 8), libgomp1 (>= 4.9), libhdf5-openmpi-103 (>= 1.8.14), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, libnetcdf13 (>= 4.0.1), libopenmpi3, libpng16-16 (>= 1.6.2-1), libpython2.7 (>= 2.7), libstdc++6 (>= 5.2), libvoro++1 (>= 0.4.6), libvtk6.3, ocl-icd-libopencl1 | libopencl1, ocl-icd-libopencl1 (>= 1.0) | libopencl-1.1-1, ocl-icd-libopencl1 (>= 1.0) | libopencl-1.2-1, ocl-icd-libopencl1 (>= 2.2.0) | libopencl-2.0-1, zlib1g (>= 1:1.1.4), mpi-default-bin Recommends: lammps-doc Section: science Priority: optional Homepage: http://lammps.sandia.gov/ Description: Molecular Dynamics Simulator LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. . LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. . LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality. drwxr-xr-x root/root 0 2019-03-08 06:18 ./ drwxr-xr-x root/root 0 2019-03-08 06:18 ./usr/ drwxr-xr-x root/root 0 2019-03-08 06:18 ./usr/bin/ -rwxr-xr-x root/root 17491208 2019-03-08 06:18 ./usr/bin/lmp drwxr-xr-x root/root 0 2019-03-08 06:18 ./usr/share/ drwxr-xr-x root/root 0 2019-03-08 06:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-03-08 06:18 ./usr/share/doc/lammps/ -rw-r--r-- root/root 214 2019-03-08 06:18 ./usr/share/doc/lammps/NEWS.Debian.gz -rw-r--r-- root/root 1130 2019-03-08 06:18 ./usr/share/doc/lammps/changelog.Debian.gz -rw-r--r-- root/root 16833 2019-03-08 06:18 ./usr/share/doc/lammps/copyright drwxr-xr-x root/root 0 2019-03-08 06:18 ./usr/share/man/ drwxr-xr-x root/root 0 2019-03-08 06:18 ./usr/share/man/man2/ -rw-r--r-- root/root 767 2019-03-08 06:18 ./usr/share/man/man2/lmp.2012-02-23.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 1755728 Build-Time: 1529 Distribution: disco-proposed Host Architecture: armhf Install-Time: 142 Job: lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc Machine Architecture: arm64 Package: lammps Package-Time: 1687 Source-Version: 0~20181211.gitad1b1897d+dfsg1-2 Space: 1755728 Status: successful Version: 0~20181211.gitad1b1897d+dfsg1-2 -------------------------------------------------------------------------------- Finished at 20190411-0935 Build needed 00:28:07, 1755728k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16615695 Scanning for processes to kill in build PACKAGEBUILD-16615695