https://launchpad.net/ubuntu/+source/last-align/1060-1/+build/19127935 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-066 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 6 Apr 11:52:03 ntpdate[228181]: adjust time server 10.211.37.1 offset -0.001431 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19127935 --image-type chroot /home/buildd/filecache-default/88ad86cb2b525f1abddded96eadf8014548f7845 Creating target for build PACKAGEBUILD-19127935 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19127935 Starting target for build PACKAGEBUILD-19127935 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19127935 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19127935 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19127935 Updating target for build PACKAGEBUILD-19127935 Ign:1 http://archive-team.internal/bootstrap/riscv64 focal InRelease Get:2 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal Release [757 B] Ign:4 http://archive-team.internal/bootstrap/riscv64 focal Release.gpg Get:5 http://ftpmaster.internal/ubuntu focal-security InRelease [97.9 kB] Get:6 http://ftpmaster.internal/ubuntu focal-updates InRelease [89.1 kB] Get:7 http://ftpmaster.internal/ubuntu focal-proposed InRelease [265 kB] Get:8 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 Packages [200 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 Packages [817 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main Translation-en [501 kB] Get:11 http://ftpmaster.internal/ubuntu focal/universe riscv64 Packages [6704 kB] Get:12 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5128 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 Packages [45.4 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [36.1 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 Packages [121 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [112 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/restricted Translation-en [860 B] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/multiverse riscv64 Packages [1140 B] Fetched 14.4 MB in 27s (532 kB/s) Reading package lists... W: Target Packages (main/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (universe/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (main/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (universe/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt coreutils cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base libapt-pkg6.0 libc-bin libc-dev-bin libc6 libc6-dev libgcc-9-dev libgnutls30 liblocale-gettext-perl libperl5.30 libstdc++-9-dev libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 perl-base 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 39.4 MB of archives. After this operation, 329 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu focal/main riscv64 coreutils riscv64 8.30-3ubuntu2 [1158 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 perl-base riscv64 5.30.0-9build1 [1419 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6-dev riscv64 2.31-0ubuntu7 [3659 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-dev-bin riscv64 2.31-0ubuntu7 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6 riscv64 2.31-0ubuntu7 [2272 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-bin riscv64 2.31-0ubuntu7 [505 kB] Get:7 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libsystemd0 riscv64 245.2-1ubuntu3 [242 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libudev1 riscv64 245.2-1ubuntu3 [69.0 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libapt-pkg6.0 riscv64 2.0.1ubuntu1 [797 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libgnutls30 riscv64 3.6.13-2ubuntu1 [720 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 apt riscv64 2.0.1ubuntu1 [1231 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 liblocale-gettext-perl riscv64 1.07-4 [16.5 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-charwidth-perl riscv64 0.04-10 [9460 B] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-iconv-perl riscv64 1.7-7 [13.2 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 g++-9 riscv64 9.3.0-10ubuntu1 [6926 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9 riscv64 9.3.0-10ubuntu1 [6788 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 libstdc++-9-dev riscv64 9.3.0-10ubuntu1 [3649 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 libgcc-9-dev riscv64 9.3.0-10ubuntu1 [404 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 cpp-9 riscv64 9.3.0-10ubuntu1 [6046 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9-base riscv64 9.3.0-10ubuntu1 [19.2 kB] Get:21 http://ftpmaster.internal/ubuntu focal/universe riscv64 gcc-8-base riscv64 8.4.0-3ubuntu2 [18.4 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 libperl5.30 riscv64 5.30.0-9build1 [3422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.4 MB in 7s (5331 kB/s) (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_riscv64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu2) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-9build1_riscv64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc-dev-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc6_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc6:riscv64 (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc-bin (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.2-1ubuntu3_riscv64.deb ... Unpacking libsystemd0:riscv64 (245.2-1ubuntu3) over (244.3-1ubuntu1) ... Setting up libsystemd0:riscv64 (245.2-1ubuntu3) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libudev1_245.2-1ubuntu3_riscv64.deb ... Unpacking libudev1:riscv64 (245.2-1ubuntu3) over (244.3-1ubuntu1) ... Setting up libudev1:riscv64 (245.2-1ubuntu3) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.0.1ubuntu1_riscv64.deb ... Unpacking libapt-pkg6.0:riscv64 (2.0.1ubuntu1) over (2.0.1) ... Setting up libapt-pkg6.0:riscv64 (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.13-2ubuntu1_riscv64.deb ... Unpacking libgnutls30:riscv64 (3.6.13-2ubuntu1) over (3.6.11.1-2ubuntu2) ... Setting up libgnutls30:riscv64 (3.6.13-2ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../apt_2.0.1ubuntu1_riscv64.deb ... Unpacking apt (2.0.1ubuntu1) over (2.0.1) ... Setting up apt (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-4_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-4) over (1.07-4) ... Preparing to unpack .../01-libtext-charwidth-perl_0.04-10_riscv64.deb ... Unpacking libtext-charwidth-perl (0.04-10) over (0.04-10) ... Preparing to unpack .../02-libtext-iconv-perl_1.7-7_riscv64.deb ... Unpacking libtext-iconv-perl (1.7-7) over (1.7-7) ... Preparing to unpack .../03-g++-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking g++-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../04-gcc-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking gcc-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../05-libstdc++-9-dev_9.3.0-10ubuntu1_riscv64.deb ... Unpacking libstdc++-9-dev:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../06-libgcc-9-dev_9.3.0-10ubuntu1_riscv64.deb ... Unpacking libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../07-cpp-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking cpp-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../08-gcc-9-base_9.3.0-10ubuntu1_riscv64.deb ... Unpacking gcc-9-base:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../09-gcc-8-base_8.4.0-3ubuntu2_riscv64.deb ... Unpacking gcc-8-base:riscv64 (8.4.0-3ubuntu2) over (8.4.0-3ubuntu1) ... Preparing to unpack .../10-libperl5.30_5.30.0-9build1_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-9build1) over (5.30.0-9build1) ... Setting up libtext-iconv-perl (1.7-7) ... Setting up libtext-charwidth-perl (0.04-10) ... Setting up gcc-8-base:riscv64 (8.4.0-3ubuntu2) ... Setting up libperl5.30:riscv64 (5.30.0-9build1) ... Setting up libc-dev-bin (2.31-0ubuntu7) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:riscv64 (9.3.0-10ubuntu1) ... Setting up libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up cpp-9 (9.3.0-10ubuntu1) ... Setting up libc6-dev:riscv64 (2.31-0ubuntu7) ... Setting up gcc-9 (9.3.0-10ubuntu1) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up g++-9 (9.3.0-10ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19127935 riscv64 focal-proposed -c chroot:build-PACKAGEBUILD-19127935 --arch=riscv64 --dist=focal-proposed --nolog last-align_1060-1.dsc Initiating build PACKAGEBUILD-19127935 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-066 +==============================================================================+ | last-align 1060-1 (riscv64) Mon, 06 Apr 2020 11:55:31 +0000 | +==============================================================================+ Package: last-align Version: 1060-1 Source Version: 1060-1 Distribution: focal-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19127935/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/last-align-JDhfzC/resolver-MKdwo3' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- last-align_1060-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/last-align-JDhfzC/last-align-1060' with '<>' I: NOTICE: Log filtering will replace 'build/last-align-JDhfzC' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [394 B] Get:5 copy:/<>/apt_archive ./ Packages [476 B] Fetched 1827 B in 0s (4553 B/s) Reading package lists... Reading package lists... W: Target Packages (main/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (universe/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/bootstrap.list:1 Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libicu66 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-pil python3.8 python3.8-minimal tzdata zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-pil-doc python3-pil-dbg python3.8-venv python3.8-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libicu66 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-pil python3.8 python3.8-minimal sbuild-build-depends-main-dummy tzdata zlib1g-dev 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 23.0 MB of archives. After this operation, 91.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-minimal riscv64 3.8.2-1ubuntu1 [698 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 libexpat1 riscv64 2.2.9-1build1 [68.8 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8-minimal riscv64 3.8.2-1ubuntu1 [1447 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-minimal riscv64 3.8.2-0ubuntu2 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 libmpdec2 riscv64 2.4.2-3 [79.2 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-stdlib riscv64 3.8.2-1ubuntu1 [1557 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8 riscv64 3.8.2-1ubuntu1 [364 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3-stdlib riscv64 3.8.2-0ubuntu2 [7072 B] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 python3 riscv64 3.8.2-0ubuntu2 [47.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 libglib2.0-0 riscv64 2.64.1-1 [1122 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main riscv64 libxml2 riscv64 2.9.10+dfsg-4build1 [558 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 libtool all 2.4.6-13 [161 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:35 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:38 http://ftpmaster.internal/ubuntu focal/main riscv64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:40 http://ftpmaster.internal/ubuntu focal/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main riscv64 po-debconf all 1.0.21 [233 kB] Get:45 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 debhelper all 12.10ubuntu1 [877 kB] Get:46 http://ftpmaster.internal/ubuntu focal/universe riscv64 help2man riscv64 1.47.13 [173 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main riscv64 libfreetype6 riscv64 2.10.1-2 [313 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main riscv64 libimagequant0 riscv64 2.12.2-1.1 [28.9 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main riscv64 libjpeg-turbo8 riscv64 2.0.3-0ubuntu1 [101 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:51 http://ftpmaster.internal/ubuntu focal/main riscv64 liblcms2-2 riscv64 2.9-4 [127 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main riscv64 libjbig0 riscv64 2.1-3.1build1 [25.7 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main riscv64 libwebp6 riscv64 0.6.1-2 [150 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main riscv64 libtiff5 riscv64 4.1.0+git191117-2build1 [147 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main riscv64 libwebpdemux2 riscv64 0.6.1-2 [8824 B] Get:56 http://ftpmaster.internal/ubuntu focal/main riscv64 libwebpmux3 riscv64 0.6.1-2 [17.4 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-pil riscv64 7.0.0-4build1 [352 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu1 [207 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.0 MB in 5s (4684 kB/s) Selecting previously unselected package libpython3.8-minimal:riscv64. (Reading database ... 9816 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2-1ubuntu1_riscv64.deb ... Unpacking libpython3.8-minimal:riscv64 (3.8.2-1ubuntu1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.2.9-1build1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2-1ubuntu1_riscv64.deb ... Unpacking python3.8-minimal (3.8.2-1ubuntu1) ... Setting up libpython3.8-minimal:riscv64 (3.8.2-1ubuntu1) ... Setting up libexpat1:riscv64 (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.2-1ubuntu1) ... Selecting previously unselected package python3-minimal. (Reading database ... 10107 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-0ubuntu2_riscv64.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.64ubuntu1_all.deb ... Unpacking mime-support (3.64ubuntu1) ... Selecting previously unselected package libmpdec2:riscv64. Preparing to unpack .../2-libmpdec2_2.4.2-3_riscv64.deb ... Unpacking libmpdec2:riscv64 (2.4.2-3) ... Selecting previously unselected package libpython3.8-stdlib:riscv64. Preparing to unpack .../3-libpython3.8-stdlib_3.8.2-1ubuntu1_riscv64.deb ... Unpacking libpython3.8-stdlib:riscv64 (3.8.2-1ubuntu1) ... Selecting previously unselected package python3.8. Preparing to unpack .../4-python3.8_3.8.2-1ubuntu1_riscv64.deb ... Unpacking python3.8 (3.8.2-1ubuntu1) ... Selecting previously unselected package libpython3-stdlib:riscv64. Preparing to unpack .../5-libpython3-stdlib_3.8.2-0ubuntu2_riscv64.deb ... Unpacking libpython3-stdlib:riscv64 (3.8.2-0ubuntu2) ... Setting up python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package python3. (Reading database ... 10509 files and directories currently installed.) Preparing to unpack .../00-python3_3.8.2-0ubuntu2_riscv64.deb ... Unpacking python3 (3.8.2-0ubuntu2) ... Selecting previously unselected package libbsd0:riscv64. Preparing to unpack .../01-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../03-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.4-4build1_riscv64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../05-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../06-man-db_2.9.1-1_riscv64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.38-4_riscv64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../08-libmagic1_1%3a5.38-4_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.38-4_riscv64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../10-libelf1_0.176-1.1build1_riscv64.deb ... Unpacking libelf1:riscv64 (0.176-1.1build1) ... Selecting previously unselected package libglib2.0-0:riscv64. Preparing to unpack .../11-libglib2.0-0_2.64.1-1_riscv64.deb ... Unpacking libglib2.0-0:riscv64 (2.64.1-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../12-tzdata_2019c-3ubuntu1_all.deb ... Unpacking tzdata (2019c-3ubuntu1) ... Selecting previously unselected package libicu66:riscv64. Preparing to unpack .../13-libicu66_66.1-2ubuntu2_riscv64.deb ... Unpacking libicu66:riscv64 (66.1-2ubuntu2) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../14-libxml2_2.9.10+dfsg-4build1_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.10+dfsg-4build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../15-gettext-base_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libsigsegv2:riscv64. Preparing to unpack .../16-libsigsegv2_2.12-2_riscv64.deb ... Unpacking libsigsegv2:riscv64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../17-m4_1.4.18-4_riscv64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../18-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../19-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../20-automake_1%3a1.16.1-4ubuntu6_all.deb ... Unpacking automake (1:1.16.1-4ubuntu6) ... Selecting previously unselected package autopoint. Preparing to unpack .../21-autopoint_0.19.8.1-10build1_all.deb ... Unpacking autopoint (0.19.8.1-10build1) ... Selecting previously unselected package libtool. Preparing to unpack .../22-libtool_2.4.6-13_all.deb ... Unpacking libtool (2.4.6-13) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../23-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../24-libdebhelper-perl_12.10ubuntu1_all.deb ... Unpacking libdebhelper-perl (12.10ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../25-libarchive-zip-perl_1.67-2_all.deb ... Unpacking libarchive-zip-perl (1.67-2) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../26-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../27-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../28-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package dwz. Preparing to unpack .../29-dwz_0.13-5_riscv64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:riscv64. Preparing to unpack .../30-libcroco3_0.6.13-1_riscv64.deb ... Unpacking libcroco3:riscv64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../33-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../34-debhelper_12.10ubuntu1_all.deb ... Unpacking debhelper (12.10ubuntu1) ... Selecting previously unselected package help2man. Preparing to unpack .../35-help2man_1.47.13_riscv64.deb ... Unpacking help2man (1.47.13) ... Selecting previously unselected package libfreetype6:riscv64. Preparing to unpack .../36-libfreetype6_2.10.1-2_riscv64.deb ... Unpacking libfreetype6:riscv64 (2.10.1-2) ... Selecting previously unselected package libimagequant0:riscv64. Preparing to unpack .../37-libimagequant0_2.12.2-1.1_riscv64.deb ... Unpacking libimagequant0:riscv64 (2.12.2-1.1) ... Selecting previously unselected package libjpeg-turbo8:riscv64. Preparing to unpack .../38-libjpeg-turbo8_2.0.3-0ubuntu1_riscv64.deb ... Unpacking libjpeg-turbo8:riscv64 (2.0.3-0ubuntu1) ... Selecting previously unselected package libjpeg8:riscv64. Preparing to unpack .../39-libjpeg8_8c-2ubuntu8_riscv64.deb ... Unpacking libjpeg8:riscv64 (8c-2ubuntu8) ... Selecting previously unselected package liblcms2-2:riscv64. Preparing to unpack .../40-liblcms2-2_2.9-4_riscv64.deb ... Unpacking liblcms2-2:riscv64 (2.9-4) ... Selecting previously unselected package libjbig0:riscv64. Preparing to unpack .../41-libjbig0_2.1-3.1build1_riscv64.deb ... Unpacking libjbig0:riscv64 (2.1-3.1build1) ... Selecting previously unselected package libwebp6:riscv64. Preparing to unpack .../42-libwebp6_0.6.1-2_riscv64.deb ... Unpacking libwebp6:riscv64 (0.6.1-2) ... Selecting previously unselected package libtiff5:riscv64. Preparing to unpack .../43-libtiff5_4.1.0+git191117-2build1_riscv64.deb ... Unpacking libtiff5:riscv64 (4.1.0+git191117-2build1) ... Selecting previously unselected package libwebpdemux2:riscv64. Preparing to unpack .../44-libwebpdemux2_0.6.1-2_riscv64.deb ... Unpacking libwebpdemux2:riscv64 (0.6.1-2) ... Selecting previously unselected package libwebpmux3:riscv64. Preparing to unpack .../45-libwebpmux3_0.6.1-2_riscv64.deb ... Unpacking libwebpmux3:riscv64 (0.6.1-2) ... Selecting previously unselected package python3-pil:riscv64. Preparing to unpack .../46-python3-pil_7.0.0-4build1_riscv64.deb ... Unpacking python3-pil:riscv64 (7.0.0-4build1) ... Selecting previously unselected package zlib1g-dev:riscv64. Preparing to unpack .../47-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu1_riscv64.deb ... Unpacking zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../48-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:riscv64 (1.5.2-2build1) ... Setting up liblcms2-2:riscv64 (2.9-4) ... Setting up mime-support (3.64ubuntu1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:riscv64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up libjbig0:riscv64 (2.1-3.1build1) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 6 11:57:52 UTC 2020. Universal Time is now: Mon Apr 6 11:57:52 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up help2man (1.47.13) ... Setting up autotools-dev (20180224.1) ... Setting up libfreetype6:riscv64 (2.10.1-2) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up libimagequant0:riscv64 (2.12.2-1.1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:riscv64 (0.6.1-2) ... Setting up libjpeg-turbo8:riscv64 (2.0.3-0ubuntu1) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu1) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libmpdec2:riscv64 (2.4.2-3) ... Setting up libpython3.8-stdlib:riscv64 (3.8.2-1ubuntu1) ... Setting up python3.8 (3.8.2-1ubuntu1) ... Setting up libwebpmux3:riscv64 (0.6.1-2) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up libpython3-stdlib:riscv64 (3.8.2-0ubuntu2) ... Setting up libjpeg8:riscv64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-13) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up libwebpdemux2:riscv64 (0.6.1-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libtiff5:riscv64 (4.1.0+git191117-2build1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-pil:riscv64 (7.0.0-4build1) ... Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 (riscv64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-10ubuntu1 gcc-9_9.3.0-10ubuntu1 libc6-dev_2.31-0ubuntu7 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 linux-libc-dev_5.4.0-21.25 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.1ubuntu1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-riscv64-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-10ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-10ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200324-1ubuntu1 gcc-8-base_8.4.0-3ubuntu2 gcc-9_9.3.0-10ubuntu1 gcc-9-base_9.3.0-10ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 help2man_1.47.13 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg6.0_2.0.1ubuntu1 libarchive-zip-perl_1.67-2 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200324-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblkid1_2.34-0.1ubuntu8 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu7 libc-dev-bin_2.31-0ubuntu7 libc6_2.31-0ubuntu7 libc6-dev_2.31-0ubuntu7 libcap-ng0_0.7.9-2.1build1 libcc1-0_10-20200324-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.10ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.3.0-10ubuntu1 libgcc-s1_10-20200324-1ubuntu1 libgcc1_1:10-20200324-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200324-1ubuntu1 libgpg-error0_1.37-1 libgpm2_1.20.7-5 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 liblcms2-2_2.9-4 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-0ubuntu2 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8-minimal_3.8.2-1ubuntu1 libpython3.8-stdlib_3.8.2-1ubuntu1 libreadline8_8.0-4 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu3 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtiff5_4.1.0+git191117-2build1 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-21.25 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 python3_3.8.2-0ubuntu2 python3-minimal_3.8.2-0ubuntu2 python3-pil_7.0.0-4build1 python3.8_3.8.2-1ubuntu1 python3.8-minimal_3.8.2-1ubuntu1 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: last-align Binary: last-align Architecture: any Version: 1060-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://last.cbrc.jp/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/last-align Vcs-Git: https://salsa.debian.org/med-team/last-align.git Testsuite: autopkgtest Testsuite-Triggers: python3-pil Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev Package-List: last-align deb science optional arch=any Checksums-Sha1: e044005e749e5cada731852ee8e0c041d0cff00e 412672 last-align_1060.orig.tar.xz eb0e9d967e3343c6bed8238c4ad3cf562cb9d24b 66048 last-align_1060-1.debian.tar.xz Checksums-Sha256: b52c3a1a90e8494bd34615586ec34e6a51edad4839f2cde41d66396e6d0a9f55 412672 last-align_1060.orig.tar.xz 4c3ff87993189ec9a77e806bb11f60be095f8f1aad93c4747e289814dd8f8260 66048 last-align_1060-1.debian.tar.xz Files: 5fa41cbde2ffa1d9ef870f59e4d3e58b 412672 last-align_1060.orig.tar.xz cd9390082c0582930e379810b1dd857b 66048 last-align_1060-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl56i1kTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0XLaD/4/BIdAgmkJurC2D7bqDehWuimdzYUU 3nwgk7Vy9tOWOj+scmfFjZCGXCZh3lp+4/JXFKW+GdS5JwtvdcrGf/q8PwvQ8ZQ7 Fxh9tai9FMqAhXm785se9kXl5oXSqmcQkPNY8uCcqwB8cXb6cEQVtKJFYbbYFcCS VC+uuNXgwgzPyg4bl99hWW0jIsE+Kplpzd/qMhkuRGy5u7wlc+BbfVH91s5NJkP6 MXnJ0cbWdQmdnBVWU8nKGVTiaqSf6faZJ8LwdyI91dk7xLPvGq92IGlxGWV9F7p8 8xgZ+1sLcJKoyUQQWMcIiGp97FW0WAlJLQnZnVQc57/f6vW8q6j4uOCuSxk1kkL7 yoJN9XLe2B9iIytHvaieR0yuGOHIc/xFrekeqT69SqflrjsFcJxBO8+lyJFZphUV VMaT2R1PZzRUvWtlwT9HMtvAF4XHkGMMC6G/G02raopKTTe2eBhDpm6GiUChf2JG h89m7ZOHvKA7rgY6FlAZ79i6MgtPxtyvTL6Q64ef1ykeo5o3s1AUvMEfe3kK1qW8 jXb4LFN0njW1DlDKXTQN00xVM5ZGZo6LC1RuWA440x+r/btYVkhByazIUSmvzD9p yLhlzkz6zrWCFYJdMsmgi6jn1mYq8K0DDh/gXNJN7ufMT48e/fSuSW963WcwlRhu vC3293swdGG/PQ== =2/KZ -----END PGP SIGNATURE----- gpgv: Signature made Tue Mar 24 22:36:09 2020 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./last-align_1060-1.dsc dpkg-source: info: extracting last-align in /<> dpkg-source: info: unpacking last-align_1060.orig.tar.xz dpkg-source: info: unpacking last-align_1060-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying helpMakefiles.patch dpkg-source: info: applying simde Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19127935 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19127935 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19127935 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package last-align dpkg-buildpackage: info: source version 1060-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j4 clean make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/src' rm -f lastdb lastal last-split last-merge-batches last-pair-probs lastdb8 lastal8 last-split8 *.o* */*.o* make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' for i in last-merge-batches last-pair-probs last-split last-split8 lastal lastal8 lastdb lastdb8; \ do \ for j in avx avx2 sse2 sse3 sse4.1 ssse3 ; \ do \ rm -f src/$i-$j ; \ done ; \ done make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make -j4 all CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3" CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread" make[2]: Entering directory '/<>' make[2]: warning: -j4 forced in submake: resetting jobserver mode. make[3]: Entering directory '/<>/src' g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alphabet.o Alphabet.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LambdaCalculator.o LambdaCalculator.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o ScoreMatrix.o ScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o TantanMasker.o TantanMasker.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o fileMap.o fileMap.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o cbrc_linalg.o cbrc_linalg.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o mcf_substitution_matrix_stats.o mcf_substitution_matrix_stats.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o tantan.o tantan.cc if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequence.o MultiSequence.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastdb.o lastdb.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastalArguments.o LastalArguments.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from GappedXdropAligner.cc:49: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAlignerDna.o GappedXdropAlignerDna.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from GappedXdropAlignerDna.cc:4: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from GappedXdropAlignerPssm.cc:3: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GeneticCode.o GeneticCode.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from GappedXdropAligner2qual.cc:3: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from GappedXdropAligner3frame.cc:53: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastEvaluer.o LastEvaluer.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessXdrop.o gaplessXdrop.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp.o alp/sls_alp.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_basic.o alp/sls_basic.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_random.o alp/njn_random.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alignment.o Alignment.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from Centroid.hh:6, from Alignment.cc:5: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentPot.o AlignmentPot.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentWrite.o AlignmentWrite.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Centroid.o Centroid.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from Centroid.hh:6, from Centroid.cc:4: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o DiagonalTable.o DiagonalTable.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPair.o SegmentPair.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPairPot.o SegmentPairPot.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastal.o lastal.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split-main.o split/last-split-main.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from Centroid.hh:6, from lastal.cc:15: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split.o split/last-split.cc cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o last-pair-probs.o last-pair-probs.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequence.o8 MultiSequence.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequenceQual.o8 MultiSequenceQual.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArray.o8 SubsetSuffixArray.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySort.o8 SubsetSuffixArraySort.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastdb.o8 lastdb.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alignment.o8 Alignment.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentPot.o8 AlignmentPot.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from Centroid.hh:6, from Alignment.cc:5: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentWrite.o8 AlignmentWrite.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Centroid.o8 Centroid.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from Centroid.hh:6, from Centroid.cc:4: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o DiagonalTable.o8 DiagonalTable.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPair.o8 SegmentPair.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPairPot.o8 SegmentPairPot.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySearch.o8 SubsetSuffixArraySearch.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastal.o8 lastal.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_split_aligner.o8 split/cbrc_split_aligner.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split.o8 split/last-split.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastdbArguments.o LastdbArguments.cc In file included from ../debian/include/simde/x86/../simde-common.h:27, from ../debian/include/simde/x86/mmx.h:28, from ../debian/include/simde/x86/sse.h:32, from ../debian/include/simde/x86/sse2.h:34, from ../debian/include/simde/x86/sse3.h:28, from ../debian/include/simde/x86/ssse3.h:28, from ../debian/include/simde/x86/sse4.1.h:28, from ../debian/include/simde/x86/avx2.h:26, from mcf_simd.hh:7, from GappedXdropAligner.hh:50, from Centroid.hh:6, from lastal.cc:15: ../debian/include/simde/x86/avx.h: In function ‘simde__m256d simde_mm256_load_pd(const double*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const double*’ to ‘const simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘simde__m256 simde_mm256_load_ps(const float*)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘const float*’ to ‘const simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a); | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_store_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_ps(simde_float32*, simde__m256)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float32*’ {aka ‘float*’} to ‘simde__m256*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h: In function ‘void simde_mm256_stream_pd(simde_float64*, simde__m256d)’: ../debian/include/simde/x86/../hedley.h:721:69: warning: cast from ‘simde_float64*’ {aka ‘double*’} to ‘simde__m256d*’ increases required alignment of target type [-Wcast-align] 721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast(expr)) | ^ ../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro ‘HEDLEY_REINTERPRET_CAST’ 68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v)) | ^~~~~~~~~~~~~~~~~~~~~~~ ../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro ‘SIMDE_CAST_ALIGN’ 4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a; | ^~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastal Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o AlignmentPot.o AlignmentWrite.o Centroid.o DiagonalTable.o MultiSequence.o MultiSequenceQual.o SegmentPair.o SegmentPairPot.o SubsetSuffixArray.o SubsetSuffixArraySearch.o lastal.o -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-split Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o split/cbrc_split_aligner.o split/last-split.o cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-merge-batches last-merge-batches.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-pair-probs last-pair-probs.o last-pair-probs-main.o -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastdb8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o8 MultiSequenceQual.o8 SubsetSuffixArray.o8 SubsetSuffixArraySort.o8 lastdb.o8 -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastdb Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o MultiSequenceQual.o SubsetSuffixArray.o SubsetSuffixArraySort.o lastdb.o -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-split8 Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o8 split/cbrc_split_aligner.o8 split/last-split.o8 g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastal8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o8 AlignmentPot.o8 AlignmentWrite.o8 Centroid.o8 DiagonalTable.o8 MultiSequence.o8 MultiSequenceQual.o8 SegmentPair.o8 SegmentPairPot.o8 SubsetSuffixArray.o8 SubsetSuffixArraySearch.o8 lastal.o8 -lz make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' /usr/bin/make -j4 install prefix=/<>/debian/last-align/usr make[2]: Entering directory '/<>' make[2]: warning: -j4 forced in submake: resetting jobserver mode. make[3]: Entering directory '/<>/src' if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi make[3]: Leaving directory '/<>/src' mkdir -p /<>/debian/last-align/usr/bin cp scripts/* /<>/debian/last-align/usr/bin cp src/lastdb src/lastal src/last-split src/last-merge-batches src/last-pair-probs src/lastdb8 src/lastal8 src/last-split8 /<>/debian/last-align/usr/bin make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs ChangeLog.txt make[1]: Leaving directory '/<>' dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman help2man --no-info --version-string="1060" \ --name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \ /<>/scripts/last-dotplot > /<>/debian/last-align/usr/share/man/man1/last-dotplot.1 help2man --no-info --version-string="1060" \ --name="genome-scale comparison of biological sequences" \ --help-option="-h" \ /<>/debian/last-align/usr/bin/lastal > /<>/debian/last-align/usr/share/man/man1/lastal.1 help2man --no-info --version-string="1060" \ --name="genome-scale comparison of biological sequences" \ --help-option="-h" \ /<>/debian/last-align/usr/bin/lastal8 > /<>/debian/last-align/usr/share/man/man1/lastal8.1 #help2man --no-info --version-string="1060" \ # --name="genome-scale comparison of biological sequences" \ # --help-option="-h" \ # /<>/debian/last-align/usr/bin/lastdb > /<>/debian/last-align/usr/share/man/man1/lastdb.1 help2man --no-info --version-string="1060" \ --name="Sort MAF-format alignments by sequence name" \ /<>/scripts/maf-sort > /<>/debian/last-align/usr/share/man/man1/maf-sort.1 help2man --no-info --version-string="1060" \ --name="changes the order of the sequences in MAF-format alignments" \ /<>/scripts/maf-swap > /<>/debian/last-align/usr/share/man/man1/maf-swap.1 #help2man --no-info --version-string="1060" \ # --name="Add extra column with mapping probabilities" \ # /<>/scripts/last-map-probs > /<>/debian/last-align/usr/share/man/man1/last-map-probs.1 # This script has not enough to put in a manual page. #help2man --no-info --version-string="1060" \ # --name="Read files of lastal output, merge corresponding batches, and write them." \ # /<>/scripts/last-merge-batches > /<>/debian/last-align/usr/share/man/man1/last-merge-batches.1 #help2man --no-info --version-string="1060" \ # --name="Clean up MAF-format alignments" \ # /<>/scripts/last-reduce-alignments > /<>/debian/last-align/usr/share/man/man1/last-reduce-alignments.1 #help2man --no-info --version-string="1060" \ # --name='Remove MAF-format alignments which are "dominated" by others' \ # /<>/scripts/last-remove-dominated > /<>/debian/last-align/usr/share/man/man1/last-remove-dominated.1 help2man --no-info --version-string="1060" \ --name='Estimates "split" or "spliced" alignments.' \ /<>/debian/last-align/usr/bin/last-split > /<>/debian/last-align/usr/share/man/man1/last-split.1 help2man --no-info --version-string="1060" \ --name='Estimates "split" or "spliced" alignments.' \ /<>/debian/last-align/usr/bin/last-split8 > /<>/debian/last-align/usr/share/man/man1/last-split8.1 help2man --no-info --version-string="1060" \ --name="Join two or more sets of MAF-format multiple alignments" \ /<>/scripts/maf-join > /<>/debian/last-align/usr/share/man/man1/maf-join.1 help2man --no-info --version-string="1060" \ --name="Convert MAF-format alignments to tabular format" \ /<>/scripts/maf-convert > /<>/debian/last-align/usr/share/man/man1/maf-convert.1 help2man --no-info --version-string="1060" \ --name="Read 2 fastq files, and write them interleaved" \ /<>/scripts/fastq-interleave > /<>/debian/last-align/usr/share/man/man1/fastq-interleave.1 help2man --no-info --version-string="1060" \ --name="Read files of lastal output, merge corresponding batches, and write them" \ /<>/debian/last-align/usr/bin/last-merge-batches > /<>/debian/last-align/usr/share/man/man1/last-merge-batches.1 #help2man --no-info --version-string="1060" \ # --name="Read alignments of paired DNA reads to a genome, and do estimations" \ # /<>/debian/last-align/usr/bin/last-pair-probs > /<>/debian/last-align/usr/share/man/man1/last-pair-probs.1 help2man --no-info --version-string="1060" \ --name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \ /<>/scripts/last-postmask > /<>/debian/last-align/usr/share/man/man1/last-postmask.1 help2man --no-info --version-string="1060" \ --name="Try to find suitable score parameters for aligning the given sequences" \ /<>/scripts/last-train > /<>/debian/last-align/usr/share/man/man1/last-train.1 make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing last-align (in debian/last-align); do_strip: , oemstrip: pkgstriptranslations: processing last-align-dbgsym (in debian/.debhelper/last-align/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/last-align/DEBIAN/control, package last-align, directory debian/last-align .. removing usr/share/doc/last-align/changelog.gz pkgstripfiles: Truncating usr/share/doc/last-align/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/last-align/dbgsym-root/DEBIAN/control, package last-align-dbgsym, directory debian/.debhelper/last-align/dbgsym-root dpkg-deb: building package 'last-align-dbgsym' in 'debian/.debhelper/scratch-space/build-last-align/last-align-dbgsym_1060-1_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package last-align ... pkgstripfiles: No PNG files. dpkg-deb: building package 'last-align' in '../last-align_1060-1_riscv64.deb'. Renaming last-align-dbgsym_1060-1_riscv64.deb to last-align-dbgsym_1060-1_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../last-align_1060-1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-06T12:17:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ last-align_1060-1_riscv64.changes: ---------------------------------- Format: 1.8 Date: Tue, 24 Mar 2020 21:22:27 +0100 Source: last-align Binary: last-align Architecture: riscv64 Version: 1060-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steffen Moeller Description: last-align - genome-scale comparison of biological sequences Changes: last-align (1060-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Cleaner clean Checksums-Sha1: ffc7db6342a4030cf0c89a6a56eaf6ba3ccdc1b3 6772848 last-align-dbgsym_1060-1_riscv64.ddeb 439f61e10eb99ee8b684d3a0419bca9ae40d2e83 5916 last-align_1060-1_riscv64.buildinfo 2dd10f869507600ef71bbeafdb5e772c797c8c7f 750452 last-align_1060-1_riscv64.deb Checksums-Sha256: aa16126c4bdc976b9c3a59326924896c6d05eb1278805690ba21da64aeaf33b5 6772848 last-align-dbgsym_1060-1_riscv64.ddeb a3e06056818793a61f180343cf41be887a647103375943b18a6e3e57ebdcc646 5916 last-align_1060-1_riscv64.buildinfo 809991f018dd47eec3220ed861b82ac879da83b335ec6d50eb250b817369ae06 750452 last-align_1060-1_riscv64.deb Files: b91bb9a7822071bf25c89b2da3d782ad 6772848 debug optional last-align-dbgsym_1060-1_riscv64.ddeb 335f4d2a755ad047526c5b4c6ddeed35 5916 science optional last-align_1060-1_riscv64.buildinfo 3c045f719e8b439b3bdbc59cd004da0c 750452 science optional last-align_1060-1_riscv64.deb /<>/last-align_1060-1_riscv64.changes.new could not be renamed to /<>/last-align_1060-1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: last-align Binary: last-align Architecture: riscv64 Version: 1060-1 Checksums-Md5: b91bb9a7822071bf25c89b2da3d782ad 6772848 last-align-dbgsym_1060-1_riscv64.ddeb 3c045f719e8b439b3bdbc59cd004da0c 750452 last-align_1060-1_riscv64.deb Checksums-Sha1: ffc7db6342a4030cf0c89a6a56eaf6ba3ccdc1b3 6772848 last-align-dbgsym_1060-1_riscv64.ddeb 2dd10f869507600ef71bbeafdb5e772c797c8c7f 750452 last-align_1060-1_riscv64.deb Checksums-Sha256: aa16126c4bdc976b9c3a59326924896c6d05eb1278805690ba21da64aeaf33b5 6772848 last-align-dbgsym_1060-1_riscv64.ddeb 809991f018dd47eec3220ed861b82ac879da83b335ec6d50eb250b817369ae06 750452 last-align_1060-1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Mon, 06 Apr 2020 12:17:51 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu4), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-5ubuntu1), binutils-common (= 2.34-5ubuntu1), binutils-riscv64-linux-gnu (= 2.34-5ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu8), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-10ubuntu1), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.10ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-10ubuntu1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200324-1ubuntu1), gcc-9 (= 9.3.0-10ubuntu1), gcc-9-base (= 9.3.0-10ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4), help2man (= 1.47.13), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libatomic1 (= 10-20200324-1ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-5ubuntu1), libblkid1 (= 2.34-0.1ubuntu8), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu7), libc-dev-bin (= 2.31-0ubuntu7), libc6 (= 2.31-0ubuntu7), libc6-dev (= 2.31-0ubuntu7), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10-20200324-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-5ubuntu1), libctf0 (= 2.34-5ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 12.10ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libexpat1 (= 2.2.9-1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.6.3-2), libfreetype6 (= 2.10.1-2), libgcc-9-dev (= 9.3.0-10ubuntu1), libgcc-s1 (= 10-20200324-1ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.1-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200324-1ubuntu1), libgpg-error0 (= 1.37-1), libicu66 (= 66.1-2ubuntu2), libimagequant0 (= 2.12.2-1.1), libisl22 (= 0.22.1-1), libjbig0 (= 2.1-3.1build1), libjpeg-turbo8 (= 2.0.3-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), liblcms2-2 (= 2.9-4), liblocale-gettext-perl (= 1.07-4), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1ubuntu8), libmpc3 (= 1.1.0-1), libmpdec2 (= 2.4.2-3), libmpfr6 (= 4.0.2-1), libncursesw6 (= 6.2-0ubuntu2), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libperl5.30 (= 5.30.0-9build1), libpipeline1 (= 1.5.2-2build1), libpng16-16 (= 1.6.37-2), libpython3-stdlib (= 3.8.2-0ubuntu2), libpython3.8-minimal (= 3.8.2-1ubuntu1), libpython3.8-stdlib (= 3.8.2-1ubuntu1), libreadline8 (= 8.0-4), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1ubuntu8), libsqlite3-0 (= 3.31.1-4), libssl1.1 (= 1.1.1d-2ubuntu6), libstdc++-9-dev (= 9.3.0-10ubuntu1), libstdc++6 (= 10-20200324-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.2-1ubuntu3), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2-0ubuntu2), libtool (= 2.4.6-13), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.2-1ubuntu3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu8), libwebp6 (= 0.6.1-2), libwebpdemux2 (= 0.6.1-2), libwebpmux3 (= 0.6.1-2), libxml2 (= 2.9.10+dfsg-4build1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-21.25), login (= 1:4.8.1-1ubuntu3), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), mime-support (= 3.64ubuntu1), ncurses-base (= 6.2-0ubuntu2), ncurses-bin (= 6.2-0ubuntu2), patch (= 2.7.6-6), perl (= 5.30.0-9build1), perl-base (= 5.30.0-9build1), perl-modules-5.30 (= 5.30.0-9build1), po-debconf (= 1.0.21), python3 (= 3.8.2-0ubuntu2), python3-minimal (= 3.8.2-0ubuntu2), python3-pil (= 7.0.0-4build1), python3.8 (= 3.8.2-1ubuntu1), python3.8-minimal (= 3.8.2-1ubuntu1), readline-common (= 8.0-4), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2019c-3ubuntu1), util-linux (= 2.34-0.1ubuntu8), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1585081347" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ last-align_1060-1_riscv64.deb ----------------------------- new Debian package, version 2.0. size 750452 bytes: control archive=3584 bytes. 1265 bytes, 25 lines control 7227 bytes, 102 lines md5sums Package: last-align Version: 1060-1 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3155 Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.4), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), parallel Recommends: python3, python3-pil Section: science Priority: optional Homepage: http://last.cbrc.jp/ Description: genome-scale comparison of biological sequences LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at: . * Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome. . The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds. drwxr-xr-x root/root 0 2020-03-24 20:22 ./ drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/ drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/bin/ -rwxr-xr-x root/root 518 2020-03-24 20:22 ./usr/bin/fastq-interleave -rwxr-xr-x root/root 45050 2020-03-24 20:22 ./usr/bin/last-dotplot -rwxr-xr-x root/root 5068 2020-03-24 20:22 ./usr/bin/last-map-probs -rwxr-xr-x root/root 10544 2020-03-24 20:22 ./usr/bin/last-merge-batches -rwxr-xr-x root/root 60728 2020-03-24 20:22 ./usr/bin/last-pair-probs -rwxr-xr-x root/root 5549 2020-03-24 20:22 ./usr/bin/last-postmask -rwxr-xr-x root/root 159448 2020-03-24 20:22 ./usr/bin/last-split -rwxr-xr-x root/root 159448 2020-03-24 20:22 ./usr/bin/last-split8 -rwxr-xr-x root/root 25318 2020-03-24 20:22 ./usr/bin/last-train -rwxr-xr-x root/root 802600 2020-03-24 20:22 ./usr/bin/lastal -rwxr-xr-x root/root 802600 2020-03-24 20:22 ./usr/bin/lastal8 -rwxr-xr-x root/root 183712 2020-03-24 20:22 ./usr/bin/lastdb -rwxr-xr-x root/root 179616 2020-03-24 20:22 ./usr/bin/lastdb8 -rwxr-xr-x root/root 29021 2020-03-24 20:22 ./usr/bin/maf-convert -rwxr-xr-x root/root 4373 2020-03-24 20:22 ./usr/bin/maf-cut -rwxr-xr-x root/root 9216 2020-03-24 20:22 ./usr/bin/maf-join -rwxr-xr-x root/root 2027 2020-03-24 20:22 ./usr/bin/maf-sort -rwxr-xr-x root/root 4947 2020-03-24 20:22 ./usr/bin/maf-swap -rwxr-xr-x root/root 234 2020-03-24 20:22 ./usr/bin/parallel-fasta -rwxr-xr-x root/root 295 2020-03-24 20:22 ./usr/bin/parallel-fastq drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/ drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc-base/ -rw-r--r-- root/root 281 2020-03-24 20:22 ./usr/share/doc-base/last-align-manual -rw-r--r-- root/root 291 2020-03-24 20:22 ./usr/share/doc-base/last-align-scripts -rw-r--r-- root/root 295 2020-03-24 20:22 ./usr/share/doc-base/last-align-seeds drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc/last-align/ -rw-r--r-- root/root 12338 2018-12-26 07:28 ./usr/share/doc/last-align/FAQ.html -rw-r--r-- root/root 2947 2015-12-16 10:25 ./usr/share/doc/last-align/FAQ.txt -rw-r--r-- root/root 926 2018-12-26 07:28 ./usr/share/doc/last-align/Makefile -rw-r--r-- root/root 201 2020-03-24 20:22 ./usr/share/doc/last-align/NEWS.Debian.gz -rw-r--r-- root/root 179 2020-03-24 20:22 ./usr/share/doc/last-align/README.test -rw-r--r-- root/root 10092 2018-12-26 07:28 ./usr/share/doc/last-align/bisulfite.html -rw-r--r-- root/root 2719 2016-03-11 07:47 ./usr/share/doc/last-align/bisulfite.txt -rw-r--r-- root/root 1058 2020-03-24 20:22 ./usr/share/doc/last-align/changelog.Debian.gz -rw-r--r-- root/root 1119 2020-03-24 20:22 ./usr/share/doc/last-align/copyright drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc/last-align/examples/ -rw-r--r-- root/root 17124 2013-05-23 00:23 ./usr/share/doc/last-align/examples/chickenMito.fa -rw-r--r-- root/root 16786 2013-05-23 00:23 ./usr/share/doc/last-align/examples/fuguMito.fa -rw-r--r-- root/root 16914 2013-05-23 00:23 ./usr/share/doc/last-align/examples/humanMito.fa -rwxr-xr-x root/root 1488 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite-paired.sh -rwxr-xr-x root/root 907 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite.sh -rw-r--r-- root/root 16636 2013-05-23 00:23 ./usr/share/doc/last-align/examples/mouseMito.fa -rw-r--r-- root/root 133732 2019-12-16 04:31 ./usr/share/doc/last-align/examples/multiMito.maf -rwxr-xr-x root/root 964 2014-10-07 11:04 ./usr/share/doc/last-align/examples/multiMito.sh -rw-r--r-- root/root 28889 2015-01-30 10:22 ./usr/share/doc/last-align/examples/myalns.maf -rw-r--r-- root/root 712 2013-05-23 00:23 ./usr/share/doc/last-align/examples/titv212.mat -rw-r--r-- root/root 408 2015-09-18 09:28 ./usr/share/doc/last-align/examples/ublast.seed -rw-r--r-- root/root 539 2013-05-23 00:23 ./usr/share/doc/last-align/examples/vertebrateMito.gc -rw-r--r-- root/root 260 2015-09-18 09:28 ./usr/share/doc/last-align/last-doc.css -rw-r--r-- root/root 20834 2019-08-21 05:33 ./usr/share/doc/last-align/last-dotplot.html -rw-r--r-- root/root 2893 2019-08-21 05:33 ./usr/share/doc/last-align/last-dotplot.txt.gz -rw-r--r-- root/root 12640 2019-10-09 10:31 ./usr/share/doc/last-align/last-evalues.html -rw-r--r-- root/root 1928 2019-10-09 10:31 ./usr/share/doc/last-align/last-evalues.txt.gz -rw-r--r-- root/root 10452 2018-12-26 07:28 ./usr/share/doc/last-align/last-map-probs.html -rw-r--r-- root/root 2687 2016-09-01 09:26 ./usr/share/doc/last-align/last-map-probs.txt -rw-r--r-- root/root 21469 2019-10-09 10:32 ./usr/share/doc/last-align/last-matrices.html -rw-r--r-- root/root 3701 2019-10-09 10:31 ./usr/share/doc/last-align/last-matrices.txt.gz -rw-r--r-- root/root 14658 2018-12-26 07:28 ./usr/share/doc/last-align/last-pair-probs.html -rw-r--r-- root/root 2145 2016-09-01 09:26 ./usr/share/doc/last-align/last-pair-probs.txt.gz -rw-r--r-- root/root 12854 2018-12-26 07:28 ./usr/share/doc/last-align/last-papers.html -rw-r--r-- root/root 2310 2018-09-05 11:49 ./usr/share/doc/last-align/last-papers.txt.gz -rw-r--r-- root/root 9811 2018-12-26 07:28 ./usr/share/doc/last-align/last-parallel.html -rw-r--r-- root/root 2546 2018-12-26 07:28 ./usr/share/doc/last-align/last-parallel.txt -rw-r--r-- root/root 7807 2018-12-26 07:29 ./usr/share/doc/last-align/last-postmask.html -rw-r--r-- root/root 998 2014-10-07 11:04 ./usr/share/doc/last-align/last-postmask.txt -rw-r--r-- root/root 9531 2018-12-26 07:29 ./usr/share/doc/last-align/last-repeats.html -rw-r--r-- root/root 2373 2015-08-03 07:16 ./usr/share/doc/last-align/last-repeats.txt -rw-r--r-- root/root 1472 2015-10-27 09:33 ./usr/share/doc/last-align/last-scripts.txt -rw-r--r-- root/root 11037 2018-12-26 07:29 ./usr/share/doc/last-align/last-seeds.html -rw-r--r-- root/root 3385 2015-09-18 09:29 ./usr/share/doc/last-align/last-seeds.txt -rw-r--r-- root/root 22037 2019-07-16 00:02 ./usr/share/doc/last-align/last-split.html -rw-r--r-- root/root 3871 2019-07-16 00:01 ./usr/share/doc/last-align/last-split.txt.gz -rw-r--r-- root/root 18661 2019-11-29 04:12 ./usr/share/doc/last-align/last-train.html -rw-r--r-- root/root 2835 2019-11-29 04:12 ./usr/share/doc/last-align/last-train.txt.gz -rw-r--r-- root/root 13736 2018-12-26 07:29 ./usr/share/doc/last-align/last-tuning.html -rw-r--r-- root/root 2303 2018-05-07 01:54 ./usr/share/doc/last-align/last-tuning.txt.gz -rw-r--r-- root/root 20648 2019-07-16 00:02 ./usr/share/doc/last-align/last-tutorial.html -rw-r--r-- root/root 3726 2019-07-16 00:01 ./usr/share/doc/last-align/last-tutorial.txt.gz -rw-r--r-- root/root 11066 2018-12-26 07:29 ./usr/share/doc/last-align/last.html -rw-r--r-- root/root 3319 2017-10-06 08:41 ./usr/share/doc/last-align/last.txt -rw-r--r-- root/root 36917 2019-11-29 04:12 ./usr/share/doc/last-align/lastal.html -rw-r--r-- root/root 8528 2019-11-29 04:12 ./usr/share/doc/last-align/lastal.txt.gz -rw-r--r-- root/root 18916 2018-12-26 07:29 ./usr/share/doc/last-align/lastdb.html -rw-r--r-- root/root 3678 2018-10-30 12:22 ./usr/share/doc/last-align/lastdb.txt.gz -rw-r--r-- root/root 12309 2018-12-26 07:29 ./usr/share/doc/last-align/maf-convert.html -rw-r--r-- root/root 3875 2017-10-06 08:41 ./usr/share/doc/last-align/maf-convert.txt -rw-r--r-- root/root 7380 2018-12-26 07:29 ./usr/share/doc/last-align/maf-cut.html -rw-r--r-- root/root 521 2018-04-20 14:43 ./usr/share/doc/last-align/maf-cut.txt -rw-r--r-- root/root 673 2020-03-24 20:22 ./usr/share/doc/last-align/run-unit-test -rw-r--r-- root/root 2356 2014-11-17 08:17 ./usr/share/doc/last-align/tag-seeds.txt.gz drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/man/man1/ -rw-r--r-- root/root 341 2020-03-24 20:22 ./usr/share/man/man1/fastq-interleave.1.gz -rw-r--r-- root/root 1287 2020-03-24 20:22 ./usr/share/man/man1/last-dotplot.1.gz -rw-r--r-- root/root 429 2020-03-24 20:22 ./usr/share/man/man1/last-map-probs.1.gz -rw-r--r-- root/root 321 2020-03-24 20:22 ./usr/share/man/man1/last-merge-batches.1.gz -rw-r--r-- root/root 637 2020-03-24 20:22 ./usr/share/man/man1/last-pair-probs.1.gz -rw-r--r-- root/root 321 2020-03-24 20:22 ./usr/share/man/man1/last-postmask.1.gz -rw-r--r-- root/root 755 2020-03-24 20:22 ./usr/share/man/man1/last-split.1.gz -rw-r--r-- root/root 756 2020-03-24 20:22 ./usr/share/man/man1/last-split8.1.gz -rw-r--r-- root/root 1073 2020-03-24 20:22 ./usr/share/man/man1/last-train.1.gz -rw-r--r-- root/root 1715 2020-03-24 20:22 ./usr/share/man/man1/lastal.1.gz -rw-r--r-- root/root 1718 2020-03-24 20:22 ./usr/share/man/man1/lastal8.1.gz -rw-r--r-- root/root 795 2020-03-24 20:22 ./usr/share/man/man1/lastdb.1.gz -rw-r--r-- root/root 607 2020-03-24 20:22 ./usr/share/man/man1/maf-convert.1.gz -rw-r--r-- root/root 276 2020-03-24 20:22 ./usr/share/man/man1/maf-join.1.gz -rw-r--r-- root/root 307 2020-03-24 20:22 ./usr/share/man/man1/maf-sort.1.gz -rw-r--r-- root/root 332 2020-03-24 20:22 ./usr/share/man/man1/maf-swap.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 167912 Build-Time: 1161 Distribution: focal-proposed Host Architecture: riscv64 Install-Time: 163 Job: last-align_1060-1.dsc Machine Architecture: riscv64 Package: last-align Package-Time: 1348 Source-Version: 1060-1 Space: 167912 Status: successful Version: 1060-1 -------------------------------------------------------------------------------- Finished at 2020-04-06T12:17:59Z Build needed 00:22:28, 167912k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19127935 Scanning for processes to kill in build PACKAGEBUILD-19127935 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19127935 Stopping target for build PACKAGEBUILD-19127935 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19127935 Removing build PACKAGEBUILD-19127935