https://launchpad.net/ubuntu/+source/last-align/1170-1/+build/20747918 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-022 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:54:14 UTC 2020 ppc64le Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 31 Dec 17:27:29 ntpdate[1975]: adjust time server 10.211.37.1 offset -0.001660 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20747918 --image-type chroot /home/buildd/filecache-default/562b8b0d733db483afe9600af35c69ac54075a74 Creating target for build PACKAGEBUILD-20747918 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20747918 Starting target for build PACKAGEBUILD-20747918 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20747918 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20747918 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20747918 Updating target for build PACKAGEBUILD-20747918 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main ppc64el Packages [1346 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5387 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el Packages [143 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [61.3 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el Packages [773 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [343 kB] Fetched 21.8 MB in 5s (4793 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 libxxhash0 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libp11-kit0 libpcre2-8-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 105 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 80.3 MB of archives. After this operation, 56.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt-dev ppc64el 1:4.4.17-1ubuntu1 [131 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc6-dev ppc64el 2.32-0ubuntu6 [2132 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc-dev-bin ppc64el 2.32-0ubuntu6 [31.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt1 ppc64el 1:4.4.17-1ubuntu1 [99.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el linux-libc-dev ppc64el 5.8.0-34.37+21.04.1 [1134 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtirpc-common all 1.3.1-1 [7452 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libk5crypto3 ppc64el 1.17-10ubuntu1 [105 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgssapi-krb5-2 ppc64el 1.17-10ubuntu1 [135 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5-3 ppc64el 1.17-10ubuntu1 [375 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5support0 ppc64el 1.17-10ubuntu1 [34.8 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libssl1.1 ppc64el 1.1.1f-1ubuntu5 [1363 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtirpc-dev ppc64el 1.3.1-1 [208 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtirpc3 ppc64el 1.3.1-1 [88.9 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libisl23 ppc64el 0.23-1 [713 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libcc1-0 ppc64el 10.2.1-2ubuntu3 [42.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf0 ppc64el 2.35.50.20201218-1ubuntu3 [85.5 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf-nobfd0 ppc64el 2.35.50.20201218-1ubuntu3 [85.5 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.35.50.20201218-1ubuntu3 [1838 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libbinutils ppc64el 2.35.50.20201218-1ubuntu3 [534 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-common ppc64el 2.35.50.20201218-1ubuntu3 [216 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils ppc64el 2.35.50.20201218-1ubuntu3 [3380 B] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gcc-10-base ppc64el 10.2.1-2ubuntu3 [19.4 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgcc-s1 ppc64el 10.2.1-2ubuntu3 [30.1 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgomp1 ppc64el 10.2.1-2ubuntu3 [109 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libitm1 ppc64el 10.2.1-2ubuntu3 [28.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libatomic1 ppc64el 10.2.1-2ubuntu3 [9984 B] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libasan6 ppc64el 10.2.1-2ubuntu3 [2107 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el liblsan0 ppc64el 10.2.1-2ubuntu3 [848 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtsan0 ppc64el 10.2.1-2ubuntu3 [2031 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libubsan1 ppc64el 10.2.1-2ubuntu3 [800 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libquadmath0 ppc64el 10.2.1-2ubuntu3 [149 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el g++-10 ppc64el 10.2.1-2ubuntu3 [8185 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libstdc++-10-dev ppc64el 10.2.1-2ubuntu3 [1793 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgcc-10-dev ppc64el 10.2.1-2ubuntu3 [1246 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gcc-10 ppc64el 10.2.1-2ubuntu3 [14.5 MB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el cpp-10 ppc64el 10.2.1-2ubuntu3 [7072 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libstdc++6 ppc64el 10.2.1-2ubuntu3 [540 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmpc3 ppc64el 1.2.0-1 [47.1 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-1 [327 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc6 ppc64el 2.32-0ubuntu6 [2680 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-files ppc64el 11ubuntu16 [60.7 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bash ppc64el 5.1-1ubuntu1 [748 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdutils ppc64el 1:2.36.1-1ubuntu2 [91.9 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main ppc64el coreutils ppc64el 8.32-4ubuntu2 [1411 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tar ppc64el 1.32+dfsg-1 [317 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg ppc64el 1.20.5ubuntu3 [1199 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dash ppc64el 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [101 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main ppc64el grep ppc64el 3.6-1 [160 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main ppc64el login ppc64el 1:4.8.1-1ubuntu7 [223 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncurses6 ppc64el 6.2+20201114-1 [122 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncursesw6 ppc64el 6.2+20201114-1 [153 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtinfo6 ppc64el 6.2+20201114-1 [104 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ncurses-bin ppc64el 6.2+20201114-1 [180 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libperl5.32 ppc64el 5.32.0-6 [4020 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl ppc64el 5.32.0-6 [225 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl-base ppc64el 5.32.0-6 [1547 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main ppc64el util-linux ppc64el 2.36.1-1ubuntu2 [1118 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdebconfclient0 ppc64el 0.255ubuntu1 [6148 B] Get:60 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-passwd ppc64el 3.5.48 [49.6 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init-system-helpers all 1.60 [37.8 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc-bin ppc64el 2.32-0ubuntu6 [647 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ncurses-base all 6.2+20201114-1 [18.5 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main ppc64el sysvinit-utils ppc64el 2.96-5ubuntu1 [22.8 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxxhash0 ppc64el 0.8.0-1 [30.5 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgcrypt20 ppc64el 1.8.7-2ubuntu1 [444 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblz4-1 ppc64el 1.9.3-0ubuntu1 [70.0 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd-sysv ppc64el 247.1-4ubuntu1 [10.3 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:70 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap-ng0 ppc64el 0.7.9-2.2build1 [11.7 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit1 ppc64el 1:2.8.5-3ubuntu3 [42.5 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpcre2-8-0 ppc64el 10.35-2ubuntu1 [204 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libselinux1 ppc64el 3.1-2build2 [81.5 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage-common all 3.1-1build2 [10.0 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage1 ppc64el 3.1-1build2 [97.0 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main ppc64el passwd ppc64el 1:4.8.1-1ubuntu7 [804 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el adduser all 3.118ubuntu4 [163 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd-timesyncd ppc64el 247.1-4ubuntu1 [28.6 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libapparmor1 ppc64el 3.0.0-0ubuntu5 [39.6 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libblkid1 ppc64el 2.36.1-1ubuntu2 [151 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libudev1 ppc64el 247.1-4ubuntu1 [82.5 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.167-1ubuntu4 [157 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuuid1 ppc64el 2.36.1-1ubuntu2 [23.1 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcryptsetup12 ppc64el 2:2.3.4-1ubuntu1 [228 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libip4tc2 ppc64el 1.8.5-3ubuntu4 [22.0 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libseccomp2 ppc64el 2.4.3-1ubuntu6 [47.7 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mount ppc64el 2.36.1-1ubuntu2 [128 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd ppc64el 247.1-4ubuntu1 [4205 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libsystemd0 ppc64el 247.1-4ubuntu1 [318 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libapt-pkg6.0 ppc64el 2.1.15 [932 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el apt ppc64el 2.1.15 [1329 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init ppc64el 1.60 [6040 B] Get:93 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libacl1 ppc64el 2.2.53-9 [19.1 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libattr1 ppc64el 1:2.4.48-6 [13.8 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmount1 ppc64el 2.36.1-1ubuntu2 [166 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsmartcols1 ppc64el 2.36.1-1ubuntu2 [107 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libidn2-0 ppc64el 2.3.0-4 [55.3 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libp11-kit0 ppc64el 0.23.22-1 [203 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap2 ppc64el 1:2.44-1 [19.8 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main ppc64el readline-common all 8.1-1 [54.1 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libreadline8 ppc64el 8.1-1 [151 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsqlite3-0 ppc64el 3.34.0-1 [628 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el openssl ppc64el 1.1.1f-1ubuntu5 [621 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tzdata all 2020d-1ubuntu1 [293 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfakeroot ppc64el 1.25.3-1.1 [28.6 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main ppc64el fakeroot ppc64el 1.25.3-1.1 [66.4 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libnpth0 ppc64el 1.6-3 [8640 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.3 MB in 3s (25.6 MB/s) (Reading database ... 12922 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc-dev-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:ppc64el (1:4.4.17-1ubuntu1) ... (Reading database ... 12921 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.8.0-34.37+21.04.1_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.8.0-34.37+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.3.1-1_all.deb ... Unpacking libtirpc-common (1.3.1-1) over (1.2.6-1build1) ... 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Setting up libfakeroot:ppc64el (1.25.3-1.1) ... Setting up libasan6:ppc64el (10.2.1-2ubuntu3) ... Setting up libkrb5support0:ppc64el (1.17-10ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 31 17:28:05 UTC 2020. Universal Time is now: Thu Dec 31 17:28:05 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up libncurses6:ppc64el (6.2+20201114-1) ... Setting up libquadmath0:ppc64el (10.2.1-2ubuntu3) ... Setting up libmpc3:ppc64el (1.2.0-1) ... Setting up libatomic1:ppc64el (10.2.1-2ubuntu3) ... Setting up libncursesw6:ppc64el (6.2+20201114-1) ... Setting up libk5crypto3:ppc64el (1.17-10ubuntu1) ... Setting up libperl5.32:ppc64el (5.32.0-6) ... Setting up libubsan1:ppc64el (10.2.1-2ubuntu3) ... Setting up libcrypt-dev:ppc64el (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:ppc64el (1.17-10ubuntu1) ... Setting up libbinutils:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libisl23:ppc64el (0.23-1) ... Setting up libc-dev-bin (2.32-0ubuntu6) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:ppc64el (10.2.1-2ubuntu3) ... Setting up liblsan0:ppc64el (10.2.1-2ubuntu3) ... Setting up cpp-10 (10.2.1-2ubuntu3) ... Setting up libitm1:ppc64el (10.2.1-2ubuntu3) ... Setting up libtsan0:ppc64el (10.2.1-2ubuntu3) ... Setting up libctf0:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libgcc-10-dev:ppc64el (10.2.1-2ubuntu3) ... Setting up libreadline8:ppc64el (8.1-1) ... Setting up perl (5.32.0-6) ... Setting up libgssapi-krb5-2:ppc64el (1.17-10ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.35.50.20201218-1ubuntu3) ... Setting up libtirpc3:ppc64el (1.3.1-1) ... Setting up binutils (2.35.50.20201218-1ubuntu3) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up libtirpc-dev:ppc64el (1.3.1-1) ... Setting up gcc-10 (10.2.1-2ubuntu3) ... Setting up libc6-dev:ppc64el (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:ppc64el (10.2.1-2ubuntu3) ... Setting up g++-10 (10.2.1-2ubuntu3) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20747918 ppc64el hirsute-proposed -c chroot:build-PACKAGEBUILD-20747918 --arch=ppc64el --dist=hirsute-proposed --nolog last-align_1170-1.dsc Initiating build PACKAGEBUILD-20747918 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:54:14 UTC 2020 ppc64le sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-ppc64el-022.buildd +==============================================================================+ | last-align 1170-1 (ppc64el) Thu, 31 Dec 2020 17:28:06 +0000 | +==============================================================================+ Package: last-align Version: 1170-1 Source Version: 1170-1 Distribution: hirsute-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20747918/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- last-align_1170-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/last-align-mUbzzs/last-align-1170' with '<>' I: NOTICE: Log filtering will replace 'build/last-align-mUbzzs' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ELZcz8/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-ELZcz8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ELZcz8/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-ELZcz8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ELZcz8/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-ELZcz8/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (77.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ELZcz8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, python3-pil, zlib1g-dev, libsimde-dev Filtered Build-Depends: debhelper-compat (= 13), help2man, python3-pil, zlib1g-dev, libsimde-dev dpkg-deb: building package 'sbuild-build-depends-last-align-dummy' in '/<>/resolver-ELZcz8/apt_archive/sbuild-build-depends-last-align-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-last-align-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-ELZcz8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ELZcz8/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-ELZcz8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ELZcz8/apt_archive ./ Sources [526 B] Get:5 copy:/<>/resolver-ELZcz8/apt_archive ./ Packages [610 B] Fetched 2099 B in 0s (110 kB/s) Reading package lists... Reading package lists... Install last-align build dependencies (apt-based resolver) ---------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsimde-dev libsub-override-perl libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support po-debconf python3 python3-minimal python3-pil python3.9 python3.9-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-pil-doc python3-pil-dbg python3.9-venv python3.9-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsimde-dev libsub-override-perl libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support po-debconf python3 python3-minimal python3-pil python3.9 python3.9-minimal sbuild-build-depends-last-align-dummy zlib1g-dev 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 23.9 MB of archives. After this operation, 105 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ELZcz8/apt_archive ./ sbuild-build-depends-last-align-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblocale-gettext-perl ppc64el 1.07-4build1 [17.2 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libpython3.9-minimal ppc64el 3.9.1-1 [749 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libexpat1 ppc64el 2.2.10-1 [77.6 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el python3.9-minimal ppc64el 3.9.1-1 [1829 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el python3-minimal ppc64el 3.9.1-1 [24.0 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el media-types all 1.0.1ubuntu1 [10.9 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mailcap all 3.67ubuntu1 [24.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mime-support all 3.66 [3696 B] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libpython3.9-stdlib ppc64el 3.9.1-1 [1754 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el python3.9 ppc64el 3.9.1-1 [414 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libpython3-stdlib ppc64el 3.9.1-1 [7244 B] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el python3 ppc64el 3.9.1-1 [48.8 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdextrautils ppc64el 2.36.1-1ubuntu2 [83.5 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuchardet0 ppc64el 0.0.7-1 [71.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main ppc64el groff-base ppc64el 1.22.4-5 [922 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpipeline1 ppc64el 1.5.3-1 [29.6 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main ppc64el man-db ppc64el 2.9.3-2 [1148 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmagic-mgc ppc64el 1:5.39-3 [228 kB] Get:20 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Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libsigsegv2 ppc64el 2.12-3 [14.5 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autoconf all 2.69-14 [293 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main ppc64el automake all 1:1.16.3-1ubuntu1 [552 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el autopoint all 0.21-3 [423 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtool all 2.4.6-14 [161 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libdebhelper-perl all 13.3ubuntu4 [63.8 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 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libbrotli1 ppc64el 1.0.9-2build2 [304 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfreetype6 ppc64el 2.10.4+dfsg-1 [425 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libimagequant0 ppc64el 2.12.2-1.1 [35.6 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libjpeg-turbo8 ppc64el 2.0.3-0ubuntu2 [155 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:54 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblcms2-2 ppc64el 2.9-4 [186 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el libsimde-dev all 0.7.0-1 [251 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libjbig0 ppc64el 2.1-3.1build1 [26.9 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwebp6 ppc64el 0.6.1-2 [225 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtiff5 ppc64el 4.1.0+git201212-1ubuntu1 [207 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwebpdemux2 ppc64el 0.6.1-2 [10.1 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwebpmux3 ppc64el 0.6.1-2 [21.0 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-pil ppc64el 8.0.1-1build1 [404 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2ubuntu4 [166 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.9 MB in 1s (18.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4build1_ppc64el.deb ... Unpacking liblocale-gettext-perl (1.07-4build1) ... Selecting previously unselected package libpython3.9-minimal:ppc64el. Preparing to unpack .../libpython3.9-minimal_3.9.1-1_ppc64el.deb ... Unpacking libpython3.9-minimal:ppc64el (3.9.1-1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.2.10-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.10-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.1-1_ppc64el.deb ... Unpacking python3.9-minimal (3.9.1-1) ... Setting up libpython3.9-minimal:ppc64el (3.9.1-1) ... Setting up libexpat1:ppc64el (2.2.10-1) ... Setting up python3.9-minimal (3.9.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15176 files and directories currently installed.) 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Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up libtiff5:ppc64el (4.1.0+git201212-1ubuntu1) ... Setting up python3.9 (3.9.1-1) ... Setting up automake (1:1.16.3-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.9.1-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-pil:ppc64el (8.0.1-1build1) ... Setting up debhelper (13.3ubuntu4) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-128-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.35.50.20201218-1ubuntu3 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.1-2ubuntu3 gcc-10_10.2.1-2ubuntu3 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 linux-libc-dev_5.8.0-34.37+21.04.1 Package versions: adduser_3.118ubuntu4 advancecomp_2.1-2.1build1 apt_2.1.15 autoconf_2.69-14 automake_1:1.16.3-1ubuntu1 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.35.50.20201218-1ubuntu3 binutils-common_2.35.50.20201218-1ubuntu3 binutils-powerpc64le-linux-gnu_2.35.50.20201218-1ubuntu3 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-2ubuntu3 dash_0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 debconf_1.5.74 debhelper_13.3ubuntu4 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu3 dpkg-dev_1.20.5ubuntu3 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-2ubuntu3 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-2ubuntu3 gcc-10-base_10.2.1-2ubuntu3 gettext_0.21-3 gettext-base_0.21-3 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 help2man_1.47.16 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapparmor1_3.0.0-0ubuntu5 libapt-pkg6.0_2.1.15 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.1-2ubuntu3 libassuan0_2.5.3-7.1 libatomic1_10.2.1-2ubuntu3 libattr1_1:2.4.48-6 libaudit-common_1:2.8.5-3ubuntu3 libaudit1_1:2.8.5-3ubuntu3 libbinutils_2.35.50.20201218-1ubuntu3 libblkid1_2.36.1-1ubuntu2 libbrotli1_1.0.9-2build2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu6 libc-dev-bin_2.32-0ubuntu6 libc6_2.32-0ubuntu6 libc6-dev_2.32-0ubuntu6 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcc1-0_10.2.1-2ubuntu3 libcom-err2_1.45.6-1ubuntu1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.50.20201218-1ubuntu3 libctf0_2.35.50.20201218-1ubuntu3 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.3ubuntu4 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.5ubuntu3 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libfreetype6_2.10.4+dfsg-1 libgcc-10-dev_10.2.1-2ubuntu3 libgcc-s1_10.2.1-2ubuntu3 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.1-2ubuntu3 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10ubuntu1 libhogweed6_3.6-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libimagequant0_2.12.2-1.1 libip4tc2_1.8.5-3ubuntu4 libisl22_0.22.1-1 libisl23_0.23-1 libitm1_10.2.1-2ubuntu3 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.3-0ubuntu2 libjpeg8_8c-2ubuntu8 libjson-c5_0.15-1 libk5crypto3_1.17-10ubuntu1 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10ubuntu1 libkrb5support0_1.17-10ubuntu1 liblcms2-2_2.9-4 liblocale-gettext-perl_1.07-4build1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.2.1-2ubuntu3 liblz4-1_1.9.3-0ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-1ubuntu2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-1 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.35-2ubuntu1 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpython3-stdlib_3.9.1-1 libpython3.9-minimal_3.9.1-1 libpython3.9-stdlib_3.9.1-1 libquadmath0_10.2.1-2ubuntu3 libreadline8_8.1-1 libseccomp2_2.4.3-1ubuntu6 libselinux1_3.1-2build2 libsemanage-common_3.1-1build2 libsemanage1_3.1-1build2 libsepol1_3.1-1 libsigsegv2_2.12-3 libsimde-dev_0.7.0-1 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu5 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 libsub-override-perl_0.09-2 libsystemd0_247.1-4ubuntu1 libtasn1-6_4.16.0-2 libtiff5_4.1.0+git201212-1ubuntu1 libtinfo6_6.2+20201114-1 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-14 libtsan0_10.2.1-2ubuntu3 libubsan1_10.2.1-2ubuntu3 libuchardet0_0.0.7-1 libudev1_247.1-4ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36.1-1ubuntu2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxau6_1:1.0.9-0ubuntu1 libxcb1_1.14-2.1 libxdmcp6_1:1.1.3-0ubuntu1 libxml2_2.9.10+dfsg-6.3build1 libxxhash0_0.8.0-1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.8.0-34.37+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu7 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 mailcap_3.67ubuntu1 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1ubuntu1 mime-support_3.66 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu7 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.9.1-1 python3-minimal_3.9.1-1 python3-pil_8.0.1-1build1 python3.9_3.9.1-1 python3.9-minimal_3.9.1-1 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Dec 31 11:43:20 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./last-align_1170-1.dsc dpkg-source: info: extracting last-align in /<> dpkg-source: info: unpacking last-align_1170.orig.tar.xz dpkg-source: info: unpacking last-align_1170-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying helpMakefiles.patch dpkg-source: info: applying simde dpkg-source: info: applying fix-959866.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20747918 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20747918 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20747918 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package last-align dpkg-buildpackage: info: source version 1170-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j4 clean make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/src' rm -f lastdb lastal last-split last-merge-batches last-pair-probs lastdb8 lastal8 last-split8 *.o* */*.o* make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' for i in last-merge-batches last-pair-probs last-split last-split8 lastal lastal8 lastdb lastdb8; \ do \ for j in avx avx2 sse2 sse3 sse4.1 ssse3 sse3 sse2 sse ; \ do \ rm -f src/$i-$j ; \ done ; \ done make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/src' g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Alphabet.o Alphabet.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LambdaCalculator.o LambdaCalculator.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o ScoreMatrix.o ScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o TantanMasker.o TantanMasker.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o dna_words_finder.o dna_words_finder.cc ScoreMatrix.cc: In member function ‘void cbrc::ScoreMatrix::init(const uchar*)’: ScoreMatrix.cc:121:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 121 | void ScoreMatrix::init(const uchar symbolToIndex[]) { | ^~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o fileMap.o fileMap.cc dna_words_finder.cc: In member function ‘void DnaWordsFinder::set(unsigned int, unsigned int, const uchar*, const uchar*, bool)’: dna_words_finder.cc:50:41: warning: array subscript has type ‘char’ [-Wchar-subscripts] 50 | baseToCode[lettersToNumbers["ACGT"[i]]] = c; | ~~~~~~~~^ dna_words_finder.cc:51:63: warning: array subscript has type ‘char’ [-Wchar-subscripts] 51 | if (!isMaskLowercase) baseToCode[lettersToNumbers["acgt"[i]]] = c; | ~~~~~~~~^ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o cbrc_linalg.o cbrc_linalg.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o mcf_substitution_matrix_stats.o mcf_substitution_matrix_stats.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o tantan.o tantan.cc if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequence.o MultiSequence.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastdb.o lastdb.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LastalArguments.o LastalArguments.cc LastalArguments.cc: In member function ‘void cbrc::LastalArguments::writeCommented(std::ostream&) const’: LastalArguments.cc:615:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 615 | if( isTranslated() ) | ^~ LastalArguments.cc:616:22: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 616 | stream << " F="; writeIntList(stream, frameshiftCosts); | ^~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from GappedXdropAligner.cc:49: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAlignerDna.o GappedXdropAlignerDna.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from GappedXdropAlignerDna.cc:4: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from GappedXdropAlignerPssm.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from GappedXdropAligner2qual.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from GappedXdropAligner3frame.cc:53: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAlignerFrame.o GappedXdropAlignerFrame.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o mcf_frameshift_xdrop_aligner.o mcf_frameshift_xdrop_aligner.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from GappedXdropAlignerFrame.cc:4: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GeneticCode.o GeneticCode.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LastEvaluer.o LastEvaluer.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o gaplessXdrop.o gaplessXdrop.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp.o alp/sls_alp.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_basic.o alp/sls_basic.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp alp/sls_alp_data.cpp: In constructor ‘Sls::importance_sampling::importance_sampling(Sls::alp_data*, long int, long int, double, long int, long int**, double*, double*)’: alp/sls_alp_data.cpp:1369:40: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1369 | d_for_D[0]=d_nu; d_for_D_states[0]='D'; | ~~~~~~~~~~~~~~~~~^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_random.o alp/njn_random.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Alignment.o Alignment.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from Alignment.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentPot.o AlignmentPot.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentWrite.o AlignmentWrite.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from AlignmentPot.hh:8, from AlignmentPot.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from AlignmentWrite.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Centroid.o Centroid.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Centroid.cc:4: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o DiagonalTable.o DiagonalTable.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPair.o SegmentPair.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPairPot.o SegmentPairPot.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastal.o lastal.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from AlignmentPot.hh:8, from lastal.cc:15: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/last-split-main.o split/last-split-main.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/last-split.o split/last-split.cc cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o last-pair-probs.o last-pair-probs.cc g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequence.o8 MultiSequence.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequenceQual.o8 MultiSequenceQual.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArray.o8 SubsetSuffixArray.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySort.o8 SubsetSuffixArraySort.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastdb.o8 lastdb.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Alignment.o8 Alignment.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from Alignment.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentPot.o8 AlignmentPot.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from AlignmentPot.hh:8, from AlignmentPot.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentWrite.o8 AlignmentWrite.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Centroid.o8 Centroid.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from AlignmentWrite.cc:3: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o DiagonalTable.o8 DiagonalTable.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Centroid.cc:4: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPair.o8 SegmentPair.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPairPot.o8 SegmentPairPot.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySearch.o8 SubsetSuffixArraySearch.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastal.o8 lastal.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/cbrc_split_aligner.o8 split/cbrc_split_aligner.cc g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/last-split.o8 split/last-split.cc In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /usr/include/simde/x86/avx2.h:33, from mcf_simd.hh:8, from GappedXdropAligner.hh:51, from Centroid.hh:7, from Alignment.hh:8, from AlignmentPot.hh:8, from lastal.cc:15: /usr/include/simde/x86/mmx.h: In function ‘__vector(2) int simde_x_mm_load_si64(const void*)’: /usr/include/simde/x86/mmx.h:1346:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1346 | simde_memcpy(&r, SIMDE_ALIGN_ASSUME_LIKE(mem_addr, simde__m64), sizeof(r)); | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=66 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LastdbArguments.o LastdbArguments.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastal Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o GappedXdropAlignerFrame.o mcf_frameshift_xdrop_aligner.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o AlignmentPot.o AlignmentWrite.o Centroid.o DiagonalTable.o MultiSequence.o MultiSequenceQual.o SegmentPair.o SegmentPairPot.o SubsetSuffixArray.o SubsetSuffixArraySearch.o lastal.o -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-split Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o split/cbrc_split_aligner.o split/last-split.o cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-merge-batches last-merge-batches.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-pair-probs last-pair-probs.o last-pair-probs-main.o -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastdb8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o8 MultiSequenceQual.o8 SubsetSuffixArray.o8 SubsetSuffixArraySort.o8 lastdb.o8 -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastdb Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o MultiSequenceQual.o SubsetSuffixArray.o SubsetSuffixArraySort.o lastdb.o -lz g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-split8 Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o8 split/cbrc_split_aligner.o8 split/last-split.o8 g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastal8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o GappedXdropAlignerFrame.o mcf_frameshift_xdrop_aligner.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o8 AlignmentPot.o8 AlignmentWrite.o8 Centroid.o8 DiagonalTable.o8 MultiSequence.o8 MultiSequenceQual.o8 SegmentPair.o8 SegmentPairPot.o8 SubsetSuffixArray.o8 SubsetSuffixArraySearch.o8 lastal.o8 -lz make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' /usr/bin/make -j install prefix=/<>/debian/last-align/usr make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/src' if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi make[3]: Leaving directory '/<>/src' mkdir -p /<>/debian/last-align/usr/bin cp scripts/* /<>/debian/last-align/usr/bin cp src/lastdb src/lastal src/last-split src/last-merge-batches src/last-pair-probs src/lastdb8 src/lastal8 src/last-split8 /<>/debian/last-align/usr/bin make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs ChangeLog.txt make[1]: Leaving directory '/<>' dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman help2man --no-info --version-string="1170" \ --name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \ /<>/scripts/last-dotplot > /<>/debian/last-align/usr/share/man/man1/last-dotplot.1 help2man --no-info --version-string="1170" \ --name="genome-scale comparison of biological sequences" \ --help-option="-h" \ /<>/debian/last-align/usr/bin/lastal > /<>/debian/last-align/usr/share/man/man1/lastal.1 help2man --no-info --version-string="1170" \ --name="genome-scale comparison of biological sequences" \ --help-option="-h" \ /<>/debian/last-align/usr/bin/lastal8 > /<>/debian/last-align/usr/share/man/man1/lastal8.1 # help2man output needs manual postprocessing - see debian/mans #help2man --no-info --version-string="1170" \ # --name="genome-scale comparison of biological sequences" \ # --help-option="-h" \ # /<>/debian/last-align/usr/bin/lastdb > /<>/debian/last-align/usr/share/man/man1/lastdb.1 help2man --no-info --version-string="1170" \ --name="Sort MAF-format alignments by sequence name" \ /<>/scripts/maf-sort > /<>/debian/last-align/usr/share/man/man1/maf-sort.1 help2man --no-info --version-string="1170" \ --name="changes the order of the sequences in MAF-format alignments" \ /<>/scripts/maf-swap > /<>/debian/last-align/usr/share/man/man1/maf-swap.1 # help2man output needs manual postprocessing - see debian/mans #help2man --no-info --version-string="1170" \ # --name="Add extra column with mapping probabilities" \ # /<>/scripts/last-map-probs > /<>/debian/last-align/usr/share/man/man1/last-map-probs.1 # This script has not enough to put in a manual page. #help2man --no-info --version-string="1170" \ # --name="Read files of lastal output, merge corresponding batches, and write them." \ # /<>/scripts/last-merge-batches > /<>/debian/last-align/usr/share/man/man1/last-merge-batches.1 # # These scripts were droped #help2man --no-info --version-string="1170" \ # --name="Clean up MAF-format alignments" \ # /<>/scripts/last-reduce-alignments > /<>/debian/last-align/usr/share/man/man1/last-reduce-alignments.1 #help2man --no-info --version-string="1170" \ # --name='Remove MAF-format alignments which are "dominated" by others' \ # /<>/scripts/last-remove-dominated > /<>/debian/last-align/usr/share/man/man1/last-remove-dominated.1 help2man --no-info --version-string="1170" \ --name='Estimates "split" or "spliced" alignments.' \ /<>/debian/last-align/usr/bin/last-split > /<>/debian/last-align/usr/share/man/man1/last-split.1 help2man --no-info --version-string="1170" \ --name='Estimates "split" or "spliced" alignments.' \ /<>/debian/last-align/usr/bin/last-split8 > /<>/debian/last-align/usr/share/man/man1/last-split8.1 help2man --no-info --version-string="1170" \ --name="Join two or more sets of MAF-format multiple alignments" \ /<>/scripts/maf-join > /<>/debian/last-align/usr/share/man/man1/maf-join.1 help2man --no-info --version-string="1170" \ --name="Convert MAF-format alignments to tabular format" \ /<>/scripts/maf-convert > /<>/debian/last-align/usr/share/man/man1/maf-convert.1 help2man --no-info --version-string="1170" \ --name="Read 2 fastq files, and write them interleaved" \ /<>/scripts/fastq-interleave > /<>/debian/last-align/usr/share/man/man1/fastq-interleave.1 help2man --no-info --version-string="1170" \ --name="Read files of lastal output, merge corresponding batches, and write them" \ /<>/debian/last-align/usr/bin/last-merge-batches > /<>/debian/last-align/usr/share/man/man1/last-merge-batches.1 # help2man output needs manual postprocessing - see debian/mans #help2man --no-info --version-string="1170" \ # --name="Read alignments of paired DNA reads to a genome, and do estimations" \ # /<>/debian/last-align/usr/bin/last-pair-probs > /<>/debian/last-align/usr/share/man/man1/last-pair-probs.1 help2man --no-info --version-string="1170" \ --name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \ /<>/scripts/last-postmask > /<>/debian/last-align/usr/share/man/man1/last-postmask.1 help2man --no-info --version-string="1170" \ --name="Try to find suitable score parameters for aligning the given sequences" \ /<>/scripts/last-train > /<>/debian/last-align/usr/share/man/man1/last-train.1 make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -VBuilt-Using="simde (= 0.7.0-1), " make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing last-align (in debian/last-align); do_strip: , oemstrip: pkgstriptranslations: processing last-align-dbgsym (in debian/.debhelper/last-align/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/last-align/DEBIAN/control, package last-align, directory debian/last-align .. removing usr/share/doc/last-align/changelog.gz pkgstripfiles: processing control file: debian/.debhelper/last-align/dbgsym-root/DEBIAN/control, package last-align-dbgsym, directory debian/.debhelper/last-align/dbgsym-root dpkg-deb: building package 'last-align-dbgsym' in 'debian/.debhelper/scratch-space/build-last-align/last-align-dbgsym_1170-1_ppc64el.deb'. pkgstripfiles: Truncating usr/share/doc/last-align/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package last-align ... pkgstripfiles: No PNG files. dpkg-deb: building package 'last-align' in '../last-align_1170-1_ppc64el.deb'. Renaming last-align-dbgsym_1170-1_ppc64el.deb to last-align-dbgsym_1170-1_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../last-align_1170-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-31T17:29:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ last-align_1170-1_ppc64el.changes: ---------------------------------- Format: 1.8 Date: Thu, 31 Dec 2020 17:04:25 +0530 Source: last-align Binary: last-align Architecture: ppc64el Version: 1170-1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: last-align - genome-scale comparison of biological sequences Changes: last-align (1170-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: c62d739ce5b2731c66ef9e3237414abd9ed397a5 11192532 last-align-dbgsym_1170-1_ppc64el.ddeb e2826ee2a1f5dbd2ef6cf9bf63de61051961ea29 6739 last-align_1170-1_ppc64el.buildinfo f17cd993b60641b4b1e65bf18772657b3d36da20 804120 last-align_1170-1_ppc64el.deb Checksums-Sha256: e02391f538ae7717a3d21d0841f2778e9c1bd0de42b3d4de0c37bdf1c51a6479 11192532 last-align-dbgsym_1170-1_ppc64el.ddeb 4305fe8d3e57452eb30996082dfb60e09ea80a926e4614185071055bb5543526 6739 last-align_1170-1_ppc64el.buildinfo 5ec56d293c3e53b450667ea8141d675b12ce5dfe5f428b49bc958c32c3242879 804120 last-align_1170-1_ppc64el.deb Files: c53de9ff2f64898cd740b8222468fb05 11192532 debug optional last-align-dbgsym_1170-1_ppc64el.ddeb 20edd3f10a18f426b2c380767ce487a7 6739 science optional last-align_1170-1_ppc64el.buildinfo 1492cd90fd764d6a0e6d24b8418aa1f0 804120 science optional last-align_1170-1_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: last-align Binary: last-align last-align-dbgsym Architecture: ppc64el Version: 1170-1 Checksums-Md5: c53de9ff2f64898cd740b8222468fb05 11192532 last-align-dbgsym_1170-1_ppc64el.ddeb 1492cd90fd764d6a0e6d24b8418aa1f0 804120 last-align_1170-1_ppc64el.deb Checksums-Sha1: c62d739ce5b2731c66ef9e3237414abd9ed397a5 11192532 last-align-dbgsym_1170-1_ppc64el.ddeb f17cd993b60641b4b1e65bf18772657b3d36da20 804120 last-align_1170-1_ppc64el.deb Checksums-Sha256: e02391f538ae7717a3d21d0841f2778e9c1bd0de42b3d4de0c37bdf1c51a6479 11192532 last-align-dbgsym_1170-1_ppc64el.ddeb 5ec56d293c3e53b450667ea8141d675b12ce5dfe5f428b49bc958c32c3242879 804120 last-align_1170-1_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Thu, 31 Dec 2020 17:29:35 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-1ubuntu1), autopoint (= 0.21-3), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.35.50.20201218-1ubuntu3), binutils-common (= 2.35.50.20201218-1ubuntu3), binutils-powerpc64le-linux-gnu (= 2.35.50.20201218-1ubuntu3), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.1-2ubuntu3), dash (= 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1), debconf (= 1.5.74), debhelper (= 13.3ubuntu4), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu3), dpkg-dev (= 1.20.5ubuntu3), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.1-2ubuntu3), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.1-2ubuntu3), gcc-10-base (= 10.2.1-2ubuntu3), gettext (= 0.21-3), gettext-base (= 0.21-3), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), help2man (= 1.47.16), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-9), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-2ubuntu3), libatomic1 (= 10.2.1-2ubuntu3), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:2.8.5-3ubuntu3), libaudit1 (= 1:2.8.5-3ubuntu3), libbinutils (= 2.35.50.20201218-1ubuntu3), libblkid1 (= 2.36.1-1ubuntu2), libbrotli1 (= 1.0.9-2build2), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu6), libc-dev-bin (= 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+------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ last-align_1170-1_ppc64el.deb ----------------------------- new Debian package, version 2.0. size 804120 bytes: control archive=3600 bytes. 1296 bytes, 26 lines control 7233 bytes, 102 lines md5sums Package: last-align Version: 1170-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4823 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4) Recommends: python3, python3-pil, parallel Built-Using: simde (= 0.7.0-1) Section: science Priority: optional Homepage: http://last.cbrc.jp/ Description: genome-scale comparison of biological sequences LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at: . * Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome. . The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). 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-------------------------------------------------------------------------------- Finished at 2020-12-31T17:29:36Z Build needed 00:01:30, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20747918 Scanning for processes to kill in build PACKAGEBUILD-20747918