https://launchpad.net/ubuntu/+source/last-align/963-1/+build/16266179 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-055 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Jan 05:09:55 ntpdate[1859]: adjust time server 10.211.37.1 offset 0.020254 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16266179 /home/buildd/filecache-default/1b8bd95dfc080fb8062b439d66609df4d6cce84f Creating target for build PACKAGEBUILD-16266179 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16266179 Starting target for build PACKAGEBUILD-16266179 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16266179 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16266179 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16266179 Updating target for build PACKAGEBUILD-16266179 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 Packages [996 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe i386 Packages [8899 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5177 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 Packages [84.4 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [39.4 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 Packages [313 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [176 kB] Fetched 16.7 MB in 9s (1872 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-i686-linux-gnu cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblz4-1 libmpfr6 libmpx2 libpng16-16 libquadmath0 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libubsan1 libzstd1 linux-libc-dev sed tar tzdata 53 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 42.4 MB of archives. After this operation, 172 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main i386 tar i386 1.30+dfsg-4 [264 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 dpkg i386 1.19.2ubuntu2 [1124 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dash i386 0.5.10.2-4 [90.9 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 grep i386 3.3-1 [155 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 sed i386 4.7-1 [193 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main i386 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main i386 libgnutls30 i386 3.6.5-2ubuntu1 [770 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libubsan1 i386 8.2.0-14ubuntu1 [138 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8-base i386 8.2.0-14ubuntu1 [18.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc1 i386 1:8.2.0-14ubuntu1 [48.1 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgomp1 i386 8.2.0-14ubuntu1 [80.7 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libitm1 i386 8.2.0-14ubuntu1 [30.8 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libatomic1 i386 8.2.0-14ubuntu1 [9620 B] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libasan5 i386 8.2.0-14ubuntu1 [375 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libmpx2 i386 8.2.0-14ubuntu1 [13.0 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libquadmath0 i386 8.2.0-14ubuntu1 [208 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main i386 cpp-8 i386 8.2.0-14ubuntu1 [7539 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libcc1-0 i386 8.2.0-14ubuntu1 [41.9 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main i386 g++-8 i386 8.2.0-14ubuntu1 [8444 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8 i386 8.2.0-14ubuntu1 [8335 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc-8-dev i386 8.2.0-14ubuntu1 [2304 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++-8-dev i386 8.2.0-14ubuntu1 [1586 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++6 i386 8.2.0-14ubuntu1 [429 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main i386 libmpfr6 i386 4.0.2~rc1-1 [246 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libbinutils i386 2.31.1-11ubuntu1 [519 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils-common i386 2.31.1-11ubuntu1 [194 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils i386 2.31.1-11ubuntu1 [3392 B] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils-i686-linux-gnu i386 2.31.1-11ubuntu1 [1988 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main i386 liblz4-1 i386 1.8.3-1ubuntu1 [61.2 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 libzstd1 i386 1.3.8+dfsg-3 [225 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 libapt-pkg5.0 i386 1.8.0~alpha3 [891 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgpg-error0 i386 1.33-3 [62.0 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpgv i386 2.2.12-1ubuntu1 [217 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main i386 apt i386 1.8.0~alpha3 [1191 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main i386 libext2fs2 i386 1.44.5-1 [186 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main i386 e2fsprogs i386 1.44.5-1 [550 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main i386 init i386 1.56+nmu1 [6076 B] Get:38 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage-common all 2.8-2 [7016 B] Get:39 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage1 i386 2.8-2 [94.2 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main i386 libcom-err2 i386 1.44.5-1 [9708 B] Get:41 http://ftpmaster.internal/ubuntu disco/main i386 libss2 i386 1.44.5-1 [11.6 kB] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsqlite3-0 i386 3.26.0+fossilbc891ac6b-1 [566 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main i386 tzdata all 2018i-1 [189 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main i386 libpng16-16 i386 1.6.36-2 [187 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main i386 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main i386 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main i386 e2fslibs i386 1.44.5-1 [2704 B] Get:48 http://ftpmaster.internal/ubuntu disco/main i386 libassuan0 i386 2.5.2-1 [37.4 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpg i386 2.2.12-1ubuntu1 [515 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpgconf i386 2.2.12-1ubuntu1 [130 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpg-agent i386 2.2.12-1ubuntu1 [249 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main i386 libcomerr2 i386 1.44.5-1 [2700 B] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main i386 linux-libc-dev i386 4.19.0-9.10 [1041 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.4 MB in 3s (13.1 MB/s) (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-4_i386.deb ... Unpacking tar (1.30+dfsg-4) over (1.30+dfsg-3) ... Setting up tar (1.30+dfsg-4) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_i386.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_i386.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_i386.deb ... Unpacking grep (3.3-1) over (3.1-3) ... Setting up grep (3.3-1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_i386.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_i386.deb ... Unpacking libgnutls30:i386 (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:i386 (3.6.5-2ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../libubsan1_8.2.0-14ubuntu1_i386.deb ... Unpacking libubsan1:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../gcc-8-base_8.2.0-14ubuntu1_i386.deb ... Unpacking gcc-8-base:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Setting up gcc-8-base:i386 (8.2.0-14ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-14ubuntu1_i386.deb ... Unpacking libgcc1:i386 (1:8.2.0-14ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:i386 (1:8.2.0-14ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../00-libgomp1_8.2.0-14ubuntu1_i386.deb ... Unpacking libgomp1:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../01-libitm1_8.2.0-14ubuntu1_i386.deb ... Unpacking libitm1:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../02-libatomic1_8.2.0-14ubuntu1_i386.deb ... Unpacking libatomic1:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../03-libasan5_8.2.0-14ubuntu1_i386.deb ... Unpacking libasan5:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../04-libmpx2_8.2.0-14ubuntu1_i386.deb ... Unpacking libmpx2:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../05-libquadmath0_8.2.0-14ubuntu1_i386.deb ... Unpacking libquadmath0:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../06-cpp-8_8.2.0-14ubuntu1_i386.deb ... Unpacking cpp-8 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../07-libcc1-0_8.2.0-14ubuntu1_i386.deb ... Unpacking libcc1-0:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../08-g++-8_8.2.0-14ubuntu1_i386.deb ... Unpacking g++-8 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../09-gcc-8_8.2.0-14ubuntu1_i386.deb ... Unpacking gcc-8 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../10-libgcc-8-dev_8.2.0-14ubuntu1_i386.deb ... Unpacking libgcc-8-dev:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../11-libstdc++-8-dev_8.2.0-14ubuntu1_i386.deb ... Unpacking libstdc++-8-dev:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../12-libstdc++6_8.2.0-14ubuntu1_i386.deb ... Unpacking libstdc++6:i386 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Setting up libstdc++6:i386 (8.2.0-14ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../0-libmpfr6_4.0.2~rc1-1_i386.deb ... Unpacking libmpfr6:i386 (4.0.2~rc1-1) over (4.0.1-2) ... Preparing to unpack .../1-libbinutils_2.31.1-11ubuntu1_i386.deb ... Unpacking libbinutils:i386 (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../2-binutils-common_2.31.1-11ubuntu1_i386.deb ... Unpacking binutils-common:i386 (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../3-binutils_2.31.1-11ubuntu1_i386.deb ... Unpacking binutils (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../4-binutils-i686-linux-gnu_2.31.1-11ubuntu1_i386.deb ... Unpacking binutils-i686-linux-gnu (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../5-liblz4-1_1.8.3-1ubuntu1_i386.deb ... Unpacking liblz4-1:i386 (1.8.3-1ubuntu1) over (1.8.2-1ubuntu1) ... Setting up liblz4-1:i386 (1.8.3-1ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3_i386.deb ... Unpacking libzstd1:i386 (1.3.8+dfsg-3) over (1.3.5+dfsg-1ubuntu1) ... Setting up libzstd1:i386 (1.3.8+dfsg-3) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.8.0~alpha3_i386.deb ... Unpacking libapt-pkg5.0:i386 (1.8.0~alpha3) over (1.8.0~alpha2ubuntu1) ... Setting up libapt-pkg5.0:i386 (1.8.0~alpha3) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.33-3_i386.deb ... Unpacking libgpg-error0:i386 (1.33-3) over (1.32-3) ... Setting up libgpg-error0:i386 (1.33-3) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1ubuntu1_i386.deb ... Unpacking gpgv (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Setting up gpgv (2.2.12-1ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../apt_1.8.0~alpha3_i386.deb ... Unpacking apt (1.8.0~alpha3) over (1.8.0~alpha2ubuntu1) ... Setting up apt (1.8.0~alpha3) ... (Reading database ... 12658 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.5-1_i386.deb ... Unpacking libext2fs2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libext2fs2:i386 (1.44.5-1) ... (Reading database ... 12657 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1_i386.deb ... Unpacking e2fsprogs (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../init_1.56+nmu1_i386.deb ... Unpacking init (1.56+nmu1) over (1.56) ... Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.8-1build2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... 12657 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_i386.deb ... Unpacking libsemanage1:i386 (2.8-2) over (2.8-1build2) ... Setting up libsemanage1:i386 (2.8-2) ... (Reading database ... 12657 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.44.5-1_i386.deb ... Unpacking libcom-err2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../01-libss2_1.44.5-1_i386.deb ... Unpacking libss2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../02-libsqlite3-0_3.26.0+fossilbc891ac6b-1_i386.deb ... Unpacking libsqlite3-0:i386 (3.26.0+fossilbc891ac6b-1) over (3.26.0-2) ... Preparing to unpack .../03-tzdata_2018i-1_all.deb ... Unpacking tzdata (2018i-1) over (2018g-1) ... Preparing to unpack .../04-libpng16-16_1.6.36-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.36-2) over (1.6.34-2) ... Preparing to unpack .../05-dpkg-dev_1.19.2ubuntu2_all.deb ... Unpacking dpkg-dev (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../06-libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../07-e2fslibs_1.44.5-1_i386.deb ... Unpacking e2fslibs:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../08-libassuan0_2.5.2-1_i386.deb ... Unpacking libassuan0:i386 (2.5.2-1) over (2.5.1-2) ... Preparing to unpack .../09-gpg_2.2.12-1ubuntu1_i386.deb ... Unpacking gpg (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Preparing to unpack .../10-gpgconf_2.2.12-1ubuntu1_i386.deb ... Unpacking gpgconf (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Preparing to unpack .../11-gpg-agent_2.2.12-1ubuntu1_i386.deb ... Unpacking gpg-agent (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Preparing to unpack .../12-libcomerr2_1.44.5-1_i386.deb ... Unpacking libcomerr2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../13-linux-libc-dev_4.19.0-9.10_i386.deb ... Unpacking linux-libc-dev:i386 (4.19.0-9.10) over (4.18.0-11.12) ... Setting up libquadmath0:i386 (8.2.0-14ubuntu1) ... Setting up libcom-err2:i386 (1.44.5-1) ... Setting up libgomp1:i386 (8.2.0-14ubuntu1) ... Setting up libatomic1:i386 (8.2.0-14ubuntu1) ... Setting up libss2:i386 (1.44.5-1) ... Setting up libcc1-0:i386 (8.2.0-14ubuntu1) ... Setting up e2fslibs:i386 (1.44.5-1) ... Setting up libpng16-16:i386 (1.6.36-2) ... Setting up tzdata (2018i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jan 12 05:10:44 UTC 2019. Universal Time is now: Sat Jan 12 05:10:44 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up linux-libc-dev:i386 (4.19.0-9.10) ... Setting up libmpfr6:i386 (4.0.2~rc1-1) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up binutils-common:i386 (2.31.1-11ubuntu1) ... Setting up libmpx2:i386 (8.2.0-14ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:i386 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:i386 (1.44.5-1) ... Setting up libasan5:i386 (8.2.0-14ubuntu1) ... Setting up libassuan0:i386 (2.5.2-1) ... Setting up libitm1:i386 (8.2.0-14ubuntu1) ... Setting up libubsan1:i386 (8.2.0-14ubuntu1) ... Setting up cpp-8 (8.2.0-14ubuntu1) ... Setting up libbinutils:i386 (2.31.1-11ubuntu1) ... Setting up gpgconf (2.2.12-1ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu1) ... Setting up binutils-i686-linux-gnu (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:i386 (8.2.0-14ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gpg (2.2.12-1ubuntu1) ... Setting up libstdc++-8-dev:i386 (8.2.0-14ubuntu1) ... Setting up gcc-8 (8.2.0-14ubuntu1) ... Setting up g++-8 (8.2.0-14ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16266179 i386 disco-proposed -c chroot:build-PACKAGEBUILD-16266179 --arch=i386 --dist=disco-proposed --nolog last-align_963-1.dsc Initiating build PACKAGEBUILD-16266179 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-055.buildd +==============================================================================+ | last-align 963-1 (i386) 12 Jan 2019 05:10 | +==============================================================================+ Package: last-align Version: 963-1 Source Version: 963-1 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/last-align-oBebO4/last-align-963' with '<>' I: NOTICE: Log filtering will replace 'build/last-align-oBebO4' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16266179/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- last-align_963-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-630IzH/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-630IzH/apt_archive ./ InRelease Get:2 copy:/<>/resolver-630IzH/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-630IzH/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-630IzH/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-630IzH/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (212 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-630IzH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 12~), help2man, python-pil, zlib1g-dev Filtered Build-Depends: debhelper (>= 12~), help2man, python-pil, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-last-align-dummy' in '/<>/resolver-i8RfU2/apt_archive/sbuild-build-depends-last-align-dummy.deb'. Ign:1 copy:/<>/resolver-i8RfU2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-i8RfU2/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-i8RfU2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-i8RfU2/apt_archive ./ Sources [237 B] Get:5 copy:/<>/resolver-i8RfU2/apt_archive ./ Packages [554 B] Fetched 2910 B in 0s (231 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install last-align build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4 man-db mime-support po-debconf python python-minimal python-pil python2 python2-minimal python2.7 python2.7-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-pil-doc python-pil-dbg python2-doc python2.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4 man-db mime-support po-debconf python python-minimal python-pil python2 python2-minimal python2.7 python2.7-minimal sbuild-build-depends-last-align-dummy zlib1g-dev 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 22.9 MB of archives. After this operation, 88.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-i8RfU2/apt_archive ./ sbuild-build-depends-last-align-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 liblocale-gettext-perl i386 1.07-3build3 [16.8 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:5 http://ftpmaster.internal/ubuntu disco/universe i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main i386 groff-base i386 1.22.4-2 [880 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main i386 libpipeline1 i386 1.5.0-2 [27.6 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main i386 man-db i386 2.8.5-1 [1112 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main i386 libpython2.7-minimal i386 2.7.15-5 [335 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main i386 python2.7-minimal i386 2.7.15-5 [1317 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main i386 python2-minimal i386 2.7.15-3 [28.1 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main i386 python-minimal i386 2.7.15-3 [5996 B] Get:13 http://ftpmaster.internal/ubuntu disco/main i386 mime-support all 3.60ubuntu1 [30.1 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main i386 libexpat1 i386 2.2.6-1 [84.8 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main i386 libpython2.7-stdlib i386 2.7.15-5 [1931 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main i386 python2.7 i386 2.7.15-5 [239 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main i386 libpython2-stdlib i386 2.7.15-3 [7728 B] Get:18 http://ftpmaster.internal/ubuntu disco/main i386 libpython-stdlib i386 2.7.15-3 [5824 B] Get:19 http://ftpmaster.internal/ubuntu disco/main i386 python2 i386 2.7.15-3 [26.5 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main i386 python i386 2.7.15-3 [7832 B] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libmagic-mgc i386 1:5.35-2 [200 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libmagic1 i386 1:5.35-2 [80.0 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main i386 file i386 1:5.35-2 [22.8 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libelf1 i386 0.175-2 [49.9 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main i386 libglib2.0-0 i386 2.58.1-2 [1246 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main i386 libicu63 i386 63.1-5 [8437 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main i386 libxml2 i386 2.9.4+dfsg1-7ubuntu3 [658 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main i386 gettext-base i386 0.19.8.1-9 [51.2 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 m4 i386 1.4.18-2 [202 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 autoconf all 2.69-11 [322 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main i386 automake all 1:1.16.1-4 [522 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main i386 autopoint all 0.19.8.1-9 [412 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main i386 libtool all 2.4.6-6 [195 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main i386 dh-autoreconf all 19 [16.1 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main i386 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main i386 libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main i386 dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:40 http://ftpmaster.internal/ubuntu disco/main i386 dwz i386 0.12-3 [81.5 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main i386 libcroco3 i386 0.6.12-3 [87.9 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main i386 gettext i386 0.19.8.1-9 [905 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main i386 po-debconf all 1.0.21 [233 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main i386 debhelper all 12ubuntu1 [887 kB] Get:46 http://ftpmaster.internal/ubuntu disco/universe i386 help2man i386 1.47.8 [169 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libfreetype6 i386 2.9.1-3 [350 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main i386 libjpeg-turbo8 i386 2.0.1-0ubuntu1 [126 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:50 http://ftpmaster.internal/ubuntu disco/main i386 liblcms2-2 i386 2.9-3 [149 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main i386 libjbig0 i386 2.1-3.1build1 [27.3 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main i386 libwebp6 i386 0.6.1-2 [197 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main i386 libtiff5 i386 4.0.10-3 [168 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main i386 libwebpdemux2 i386 0.6.1-2 [9824 B] Get:55 http://ftpmaster.internal/ubuntu disco/main i386 libwebpmux3 i386 0.6.1-2 [21.0 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main i386 python-pil i386 5.3.0-1 [338 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.9 MB in 1s (30.6 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build3_i386.deb ... Unpacking liblocale-gettext-perl (1.07-3build3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../01-libbsd0_0.9.1-1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../03-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.4-2_i386.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../05-libpipeline1_1.5.0-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../06-man-db_2.8.5-1_i386.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../07-libpython2.7-minimal_2.7.15-5_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.15-5) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../08-python2.7-minimal_2.7.15-5_i386.deb ... Unpacking python2.7-minimal (2.7.15-5) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../09-python2-minimal_2.7.15-3_i386.deb ... Unpacking python2-minimal (2.7.15-3) ... Selecting previously unselected package python-minimal. Preparing to unpack .../10-python-minimal_2.7.15-3_i386.deb ... Unpacking python-minimal (2.7.15-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../12-libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../13-libpython2.7-stdlib_2.7.15-5_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.15-5) ... Selecting previously unselected package python2.7. Preparing to unpack .../14-python2.7_2.7.15-5_i386.deb ... Unpacking python2.7 (2.7.15-5) ... Selecting previously unselected package libpython2-stdlib:i386. Preparing to unpack .../15-libpython2-stdlib_2.7.15-3_i386.deb ... Unpacking libpython2-stdlib:i386 (2.7.15-3) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../16-libpython-stdlib_2.7.15-3_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.15-3) ... Setting up libpython2.7-minimal:i386 (2.7.15-5) ... Setting up python2.7-minimal (2.7.15-5) ... Setting up python2-minimal (2.7.15-3) ... Selecting previously unselected package python2. (Reading database ... 14040 files and directories currently installed.) Preparing to unpack .../python2_2.7.15-3_i386.deb ... Unpacking python2 (2.7.15-3) ... Setting up python-minimal (2.7.15-3) ... Selecting previously unselected package python. (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../00-python_2.7.15-3_i386.deb ... Unpacking python (2.7.15-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.35-2_i386.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.35-2_i386.deb ... Unpacking libmagic1:i386 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.35-2_i386.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../04-libelf1_0.175-2_i386.deb ... Unpacking libelf1:i386 (0.175-2) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../05-libglib2.0-0_2.58.1-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.1-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../06-libicu63_63.1-5_i386.deb ... Unpacking libicu63:i386 (63.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../07-libxml2_2.9.4+dfsg1-7ubuntu3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../09-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../15-libtool_2.4.6-6_all.deb ... Unpacking libtool (2.4.6-6) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../16-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../17-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.0.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.0.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.0.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.0.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../21-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../22-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../23-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../24-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../25-debhelper_12ubuntu1_all.deb ... Unpacking debhelper (12ubuntu1) ... Selecting previously unselected package help2man. Preparing to unpack .../26-help2man_1.47.8_i386.deb ... Unpacking help2man (1.47.8) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../27-libfreetype6_2.9.1-3_i386.deb ... Unpacking libfreetype6:i386 (2.9.1-3) ... Selecting previously unselected package libjpeg-turbo8:i386. Preparing to unpack .../28-libjpeg-turbo8_2.0.1-0ubuntu1_i386.deb ... Unpacking libjpeg-turbo8:i386 (2.0.1-0ubuntu1) ... Selecting previously unselected package libjpeg8:i386. Preparing to unpack .../29-libjpeg8_8c-2ubuntu8_i386.deb ... Unpacking libjpeg8:i386 (8c-2ubuntu8) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../30-liblcms2-2_2.9-3_i386.deb ... Unpacking liblcms2-2:i386 (2.9-3) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../31-libjbig0_2.1-3.1build1_i386.deb ... Unpacking libjbig0:i386 (2.1-3.1build1) ... Selecting previously unselected package libwebp6:i386. Preparing to unpack .../32-libwebp6_0.6.1-2_i386.deb ... Unpacking libwebp6:i386 (0.6.1-2) ... Selecting previously unselected package libtiff5:i386. Preparing to unpack .../33-libtiff5_4.0.10-3_i386.deb ... Unpacking libtiff5:i386 (4.0.10-3) ... Selecting previously unselected package libwebpdemux2:i386. Preparing to unpack .../34-libwebpdemux2_0.6.1-2_i386.deb ... Unpacking libwebpdemux2:i386 (0.6.1-2) ... Selecting previously unselected package libwebpmux3:i386. Preparing to unpack .../35-libwebpmux3_0.6.1-2_i386.deb ... Unpacking libwebpmux3:i386 (0.6.1-2) ... Selecting previously unselected package python-pil:i386. Preparing to unpack .../36-python-pil_5.3.0-1_i386.deb ... Unpacking python-pil:i386 (5.3.0-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../37-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package sbuild-build-depends-last-align-dummy. Preparing to unpack .../38-sbuild-build-depends-last-align-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-last-align-dummy (0.invalid.0) ... Setting up libexpat1:i386 (2.2.6-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libicu63:i386 (63.1-5) ... Setting up liblcms2-2:i386 (2.9-3) ... Setting up libjbig0:i386 (2.1-3.1build1) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libelf1:i386 (0.175-2) ... Setting up libglib2.0-0:i386 (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-9) ... Setting up libjpeg-turbo8:i386 (2.0.1-0ubuntu1) ... Setting up libpipeline1:i386 (1.5.0-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:i386 (0.9.1-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libfreetype6:i386 (2.9.1-3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:i386 (1:5.35-2) ... Setting up libcroco3:i386 (0.6.12-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up liblocale-gettext-perl (1.07-3build3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:i386 (2.7.15-5) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:i386 (0.6.1-2) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up python2.7 (2.7.15-5) ... Setting up libtiff5:i386 (4.0.10-3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.35-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libwebpmux3:i386 (0.6.1-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.8) ... Setting up libwebpdemux2:i386 (0.6.1-2) ... Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython2-stdlib:i386 (2.7.15-3) ... Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up python2 (2.7.15-3) ... Setting up libpython-stdlib:i386 (2.7.15-3) ... Setting up python (2.7.15-3) ... Setting up python-pil:i386 (5.3.0-1) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-14ubuntu1 gcc-8_8.2.0-14ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-14ubuntu1 libstdc++6_8.2.0-14ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-i686-linux-gnu_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-14ubuntu1 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.35-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-14ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-14ubuntu1 gcc-8-base_8.2.0-14ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu1 gpg-agent_2.2.12-1ubuntu1 gpgconf_2.2.12-1ubuntu1 gpgv_2.2.12-1ubuntu1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.6-5ubuntu2 help2man_1.47.8 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-14ubuntu1 libassuan0_2.5.2-1 libatomic1_8.2.0-14ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-11ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-14ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libfreetype6_2.9.1-3 libgcc-8-dev_8.2.0-14ubuntu1 libgcc1_1:8.2.0-14ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-14ubuntu1 libgpg-error0_1.33-3 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-14ubuntu1 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.1-0ubuntu1 libjpeg8_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu2 liblcms2-2_2.9-3 liblocale-gettext-perl_1.07-3build3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2~rc1-1 libmpx2_8.2.0-14ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2ubuntu1 libpython-stdlib_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libquadmath0_8.2.0-14ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-14ubuntu1 libstdc++6_8.2.0-14ubuntu1 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtiff5_4.0.10-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libubsan1_8.2.0-14ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-minimal_2.7.15-3 python-pil_5.3.0-1 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-minimal_2.7.15-5 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jan 11 21:52:29 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./last-align_963-1.dsc dpkg-source: info: extracting last-align in last-align-963 dpkg-source: info: unpacking last-align_963.orig.tar.xz dpkg-source: info: unpacking last-align_963-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16266179 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16266179 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16266179 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package last-align dpkg-buildpackage: info: source version 963-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/src' rm -f lastdb lastal last-split last-merge-batches last-pair-probs lastdb8 lastal8 last-split8 *.o* */*.o* make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' make all CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11" CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread" make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/src' g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Alphabet.o Alphabet.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LambdaCalculator.o LambdaCalculator.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o ScoreMatrix.o ScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o TantanMasker.o TantanMasker.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o fileMap.o fileMap.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o tantan.o tantan.cc if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LastdbArguments.o LastdbArguments.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o MultiSequence.o MultiSequence.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o lastdb.o lastdb.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastdb Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastdbArguments.o MultiSequence.o MultiSequenceQual.o SubsetSuffixArray.o SubsetSuffixArraySort.o lastdb.o -lz g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LastalArguments.o LastalArguments.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GeneralizedAffineGapCosts.o GeneralizedAffineGapCosts.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GeneticCode.o GeneticCode.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LastEvaluer.o LastEvaluer.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o gaplessXdrop.o gaplessXdrop.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp In file included from alp/njn_matrix.hpp:43, from alp/njn_localmaxstatutil.hpp:39, from alp/sls_alignment_evaluer.cpp:44: alp/njn_vector.hpp: In member function ‘virtual void Njn::Vector::free2()’: alp/njn_vector.hpp:333:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~ alp/njn_vector.hpp:333:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~~~~~~~~~ In file included from alp/njn_localmaxstatutil.hpp:39, from alp/sls_alignment_evaluer.cpp:44: alp/njn_matrix.hpp: In member function ‘virtual void Njn::Matrix::free2()’: alp/njn_matrix.hpp:600:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~ alp/njn_matrix.hpp:600:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp.o alp/sls_alp.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_basic.o alp/sls_basic.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp In file included from alp/njn_matrix.hpp:43, from alp/njn_localmaxstatutil.hpp:39, from alp/njn_localmaxstatmatrix.cpp:37: alp/njn_vector.hpp: In member function ‘virtual void Njn::Vector::free2()’: alp/njn_vector.hpp:333:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~ alp/njn_vector.hpp:333:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~~~~~~~~~ In file included from alp/njn_localmaxstatutil.hpp:39, from alp/njn_localmaxstatmatrix.cpp:37: alp/njn_matrix.hpp: In member function ‘virtual void Njn::Matrix::free2()’: alp/njn_matrix.hpp:600:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~ alp/njn_matrix.hpp:600:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp In file included from alp/njn_matrix.hpp:43, from alp/njn_localmaxstatutil.hpp:39, from alp/njn_localmaxstat.cpp:42: alp/njn_vector.hpp: In member function ‘virtual void Njn::Vector::free2()’: alp/njn_vector.hpp:333:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~ alp/njn_vector.hpp:333:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~~~~~~~~~ In file included from alp/njn_localmaxstatutil.hpp:39, from alp/njn_localmaxstat.cpp:42: alp/njn_matrix.hpp: In member function ‘virtual void Njn::Matrix::free2()’: alp/njn_matrix.hpp:600:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~ alp/njn_matrix.hpp:600:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp In file included from alp/njn_matrix.hpp:43, from alp/njn_localmaxstatutil.hpp:39, from alp/njn_localmaxstatutil.cpp:37: alp/njn_vector.hpp: In member function ‘virtual void Njn::Vector::free2()’: alp/njn_vector.hpp:333:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~ alp/njn_vector.hpp:333:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~~~~~~~~~ In file included from alp/njn_localmaxstatutil.hpp:39, from alp/njn_localmaxstatutil.cpp:37: alp/njn_matrix.hpp: In member function ‘virtual void Njn::Matrix::free2()’: alp/njn_matrix.hpp:600:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~ alp/njn_matrix.hpp:600:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_random.o alp/njn_random.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp In file included from alp/njn_matrix.hpp:43, from alp/njn_localmaxstatutil.hpp:39, from alp/sls_falp_alignment_evaluer.cpp:43: alp/njn_vector.hpp: In member function ‘virtual void Njn::Vector::free2()’: alp/njn_vector.hpp:333:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~ alp/njn_vector.hpp:333:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~~~~~~~~~ In file included from alp/njn_localmaxstatutil.hpp:39, from alp/sls_falp_alignment_evaluer.cpp:43: alp/njn_matrix.hpp: In member function ‘virtual void Njn::Matrix::free2()’: alp/njn_matrix.hpp:600:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~ alp/njn_matrix.hpp:600:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp In file included from alp/njn_matrix.hpp:43, from alp/njn_localmaxstatutil.hpp:39, from alp/sls_fsa1.hpp:45, from alp/sls_fsa1.cpp:36: alp/njn_vector.hpp: In member function ‘virtual void Njn::Vector::free2()’: alp/njn_vector.hpp:333:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~ alp/njn_vector.hpp:333:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (getM () > 0) delete [] d_vector_p; d_vector_p = 0; ^~~~~~~~~~ In file included from alp/njn_localmaxstatutil.hpp:39, from alp/sls_fsa1.hpp:45, from alp/sls_fsa1.cpp:36: alp/njn_matrix.hpp: In member function ‘virtual void Njn::Matrix::free2()’: alp/njn_matrix.hpp:600:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~ alp/njn_matrix.hpp:600:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (this->getM () > 0) delete [] d_matrix_p; d_matrix_p = 0; ^~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Alignment.o Alignment.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o AlignmentPot.o AlignmentPot.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o AlignmentWrite.o AlignmentWrite.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Centroid.o Centroid.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o DiagonalTable.o DiagonalTable.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SegmentPair.o SegmentPair.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SegmentPairPot.o SegmentPairPot.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o lastal.o lastal.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastal Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o GeneralizedAffineGapCosts.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o AlignmentPot.o AlignmentWrite.o Centroid.o DiagonalTable.o MultiSequence.o MultiSequenceQual.o SegmentPair.o SegmentPairPot.o SubsetSuffixArray.o SubsetSuffixArraySearch.o lastal.o -lz g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/cbrc_linalg.o split/cbrc_linalg.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/last-split-main.o split/last-split-main.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc split/cbrc_split_aligner.cc: In member function ‘void cbrc::SplitAligner::initSpliceSignals(unsigned int)’: split/cbrc_split_aligner.cc:729:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] if (a.rend > chromEnd - chromBeg) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/last-split.o split/last-split.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-split Alphabet.o fileMap.o split/cbrc_linalg.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o split/cbrc_split_aligner.o split/last-split.o cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-merge-batches last-merge-batches.o g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o last-pair-probs.o last-pair-probs.cc g++ -DLAST_INT_TYPE=unsigned -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-pair-probs last-pair-probs.o last-pair-probs-main.o -lz g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o MultiSequence.o8 MultiSequence.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o MultiSequenceQual.o8 MultiSequenceQual.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArray.o8 SubsetSuffixArray.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArraySort.o8 SubsetSuffixArraySort.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o lastdb.o8 lastdb.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastdb8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastdbArguments.o MultiSequence.o8 MultiSequenceQual.o8 SubsetSuffixArray.o8 SubsetSuffixArraySort.o8 lastdb.o8 -lz g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Alignment.o8 Alignment.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o AlignmentPot.o8 AlignmentPot.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o AlignmentWrite.o8 AlignmentWrite.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Centroid.o8 Centroid.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o DiagonalTable.o8 DiagonalTable.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SegmentPair.o8 SegmentPair.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SegmentPairPot.o8 SegmentPairPot.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArraySearch.o8 SubsetSuffixArraySearch.cc g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o lastal.o8 lastal.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o lastal8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o GeneralizedAffineGapCosts.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o8 AlignmentPot.o8 AlignmentWrite.o8 Centroid.o8 DiagonalTable.o8 MultiSequence.o8 MultiSequenceQual.o8 SegmentPair.o8 SegmentPairPot.o8 SubsetSuffixArray.o8 SubsetSuffixArraySearch.o8 lastal.o8 -lz g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/cbrc_split_aligner.o8 split/cbrc_split_aligner.cc split/cbrc_split_aligner.cc: In member function ‘void cbrc::SplitAligner::initSpliceSignals(unsigned int)’: split/cbrc_split_aligner.cc:729:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] if (a.rend > chromEnd - chromBeg) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -DLAST_INT_TYPE=size_t -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/last-split.o8 split/last-split.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -pthread -o last-split8 Alphabet.o fileMap.o split/cbrc_linalg.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o8 split/cbrc_split_aligner.o8 split/last-split.o8 make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' make install prefix=/<>/debian/last-align/usr make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/src' if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi make[3]: Leaving directory '/<>/src' mkdir -p /<>/debian/last-align/usr/bin cp src/lastdb src/lastal src/last-split src/last-merge-batches src/last-pair-probs src/lastdb8 src/lastal8 src/last-split8 scripts/* /<>/debian/last-align/usr/bin make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs ChangeLog.txt make[1]: Leaving directory '/<>' dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman help2man --no-info --version-string="963" \ --name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \ /<>/scripts/last-dotplot > /<>/debian/last-align/usr/share/man/man1//last-dotplot.1 help2man --no-info --version-string="963" \ --name="genome-scale comparison of biological sequences" \ --help-option="-h" \ /<>/src/lastal > /<>/debian/last-align/usr/share/man/man1//lastal.1 help2man --no-info --version-string="963" \ --name="genome-scale comparison of biological sequences" \ --help-option="-h" \ /<>/src/lastal8 > /<>/debian/last-align/usr/share/man/man1//lastal8.1 #help2man --no-info --version-string="963" \ # --name="genome-scale comparison of biological sequences" \ # --help-option="-h" \ # /<>/src/lastdb > /<>/debian/last-align/usr/share/man/man1//lastdb.1 help2man --no-info --version-string="963" \ --name="Sort MAF-format alignments by sequence name" \ /<>/scripts/maf-sort > /<>/debian/last-align/usr/share/man/man1//maf-sort.1 help2man --no-info --version-string="963" \ --name="changes the order of the sequences in MAF-format alignments" \ /<>/scripts/maf-swap > /<>/debian/last-align/usr/share/man/man1//maf-swap.1 #help2man --no-info --version-string="963" \ # --name="Add extra column with mapping probabilities" \ # /<>/scripts/last-map-probs > /<>/debian/last-align/usr/share/man/man1//last-map-probs.1 # This script has not enough to put in a manual page. #help2man --no-info --version-string="963" \ # --name="Read files of lastal output, merge corresponding batches, and write them." \ # /<>/scripts/last-merge-batches > /<>/debian/last-align/usr/share/man/man1//last-merge-batches.1 #help2man --no-info --version-string="963" \ # --name="Clean up MAF-format alignments" \ # /<>/scripts/last-reduce-alignments > /<>/debian/last-align/usr/share/man/man1//last-reduce-alignments.1 #help2man --no-info --version-string="963" \ # --name='Remove MAF-format alignments which are "dominated" by others' \ # /<>/scripts/last-remove-dominated > /<>/debian/last-align/usr/share/man/man1//last-remove-dominated.1 help2man --no-info --version-string="963" \ --name='Estimates "split" or "spliced" alignments.' \ /<>/src/last-split > /<>/debian/last-align/usr/share/man/man1//last-split.1 help2man --no-info --version-string="963" \ --name='Estimates "split" or "spliced" alignments.' \ /<>/src/last-split8 > /<>/debian/last-align/usr/share/man/man1//last-split8.1 help2man --no-info --version-string="963" \ --name="Join two or more sets of MAF-format multiple alignments" \ /<>/scripts/maf-join > /<>/debian/last-align/usr/share/man/man1//maf-join.1 help2man --no-info --version-string="963" \ --name="Convert MAF-format alignments to tabular format" \ /<>/scripts/maf-convert > /<>/debian/last-align/usr/share/man/man1//maf-convert.1 help2man --no-info --version-string="963" \ --name="Read 2 fastq files, and write them interleaved" \ /<>/scripts/fastq-interleave > /<>/debian/last-align/usr/share/man/man1//fastq-interleave.1 help2man --no-info --version-string="963" \ --name="Read files of lastal output, merge corresponding batches, and write them" \ /<>/src/last-merge-batches > /<>/debian/last-align/usr/share/man/man1//last-merge-batches.1 #help2man --no-info --version-string="963" \ # --name="Read alignments of paired DNA reads to a genome, and do estimations" \ # /<>/src/last-pair-probs > /<>/debian/last-align/usr/share/man/man1//last-pair-probs.1 help2man --no-info --version-string="963" \ --name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \ /<>/scripts/last-postmask > /<>/debian/last-align/usr/share/man/man1//last-postmask.1 help2man --no-info --version-string="963" \ --name="Try to find suitable score parameters for aligning the given sequences" \ /<>/scripts/last-train > /<>/debian/last-align/usr/share/man/man1//last-train.1 make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing last-align (in debian/last-align); do_strip: , oemstrip: pkgstriptranslations: processing last-align-dbgsym (in debian/.debhelper/last-align/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/last-align/dbgsym-root/DEBIAN/control, package last-align-dbgsym, directory debian/.debhelper/last-align/dbgsym-root dpkg-deb: building package 'last-align-dbgsym' in 'debian/.debhelper/scratch-space/build-last-align/last-align-dbgsym_963-1_i386.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/last-align/DEBIAN/control, package last-align, directory debian/last-align .. removing usr/share/doc/last-align/changelog.gz pkgstripfiles: Truncating usr/share/doc/last-align/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package last-align ... pkgstripfiles: No PNG files. dpkg-deb: building package 'last-align' in '../last-align_963-1_i386.deb'. Renaming last-align-dbgsym_963-1_i386.deb to last-align-dbgsym_963-1_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../last-align_963-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190112-0514 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ last-align_963-1_i386.changes: ------------------------------ Format: 1.8 Date: Fri, 11 Jan 2019 22:49:18 +0100 Source: last-align Binary: last-align Architecture: i386 Version: 963-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: last-align - genome-scale comparison of biological sequences Changes: last-align (963-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * debian/tests/control: Replace needs-recommends by explicitly adding recommended package python-pil to test depends Checksums-Sha1: aefd80c3064d32c071c7d0ce03b24ce2cf9cd495 10243640 last-align-dbgsym_963-1_i386.ddeb 0755a63e46641a598acd2f06a2617a3b3003d24f 5711 last-align_963-1_i386.buildinfo 09d2ae24b89df99e5264394c4f72ae868328453e 649004 last-align_963-1_i386.deb Checksums-Sha256: 8f79e81e90e116361c0888b8b5bde6edfd48699df2d6c100c48f1a332a50d498 10243640 last-align-dbgsym_963-1_i386.ddeb 458643e4f77e4eddcecb0614ad2dad755f0bf5c5e3e7883be184917315ee2a31 5711 last-align_963-1_i386.buildinfo d05f4591fba06f5a7d058960584d6e3c23f2fc48f390ec73108be59daeaa3795 649004 last-align_963-1_i386.deb Files: 2fbcbd9a8d462787161da19a95534c7b 10243640 debug optional last-align-dbgsym_963-1_i386.ddeb b5c18438ab94947baabd10dd30bbd821 5711 science optional last-align_963-1_i386.buildinfo b1b5c05d689d5dd2ac13219d1760e009 649004 science optional last-align_963-1_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ last-align_963-1_i386.deb ------------------------- new debian package, version 2.0. size 649004 bytes: control archive=3568 bytes. 1258 bytes, 25 lines control 7227 bytes, 102 lines md5sums Package: last-align Version: 963-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3671 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.2), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), parallel Recommends: python, python-pil Section: science Priority: optional Homepage: http://last.cbrc.jp/ Description: genome-scale comparison of biological sequences LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at: . * Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome. . The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds. drwxr-xr-x root/root 0 2019-01-11 21:49 ./ drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/ drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/bin/ -rwxr-xr-x root/root 518 2019-01-11 21:49 ./usr/bin/fastq-interleave -rwxr-xr-x root/root 41467 2019-01-11 21:49 ./usr/bin/last-dotplot -rwxr-xr-x root/root 5072 2019-01-11 21:49 ./usr/bin/last-map-probs -rwxr-xr-x root/root 13872 2019-01-11 21:49 ./usr/bin/last-merge-batches -rwxr-xr-x root/root 71448 2019-01-11 21:49 ./usr/bin/last-pair-probs -rwxr-xr-x root/root 5541 2019-01-11 21:49 ./usr/bin/last-postmask -rwxr-xr-x root/root 169780 2019-01-11 21:49 ./usr/bin/last-split -rwxr-xr-x root/root 169780 2019-01-11 21:49 ./usr/bin/last-split8 -rwxr-xr-x root/root 20705 2019-01-11 21:49 ./usr/bin/last-train -rwxr-xr-x root/root 1021460 2019-01-11 21:49 ./usr/bin/lastal -rwxr-xr-x root/root 1021460 2019-01-11 21:49 ./usr/bin/lastal8 -rwxr-xr-x root/root 218792 2019-01-11 21:49 ./usr/bin/lastdb -rwxr-xr-x root/root 218792 2019-01-11 21:49 ./usr/bin/lastdb8 -rwxr-xr-x root/root 29025 2019-01-11 21:49 ./usr/bin/maf-convert -rwxr-xr-x root/root 4359 2019-01-11 21:49 ./usr/bin/maf-cut -rwxr-xr-x root/root 9221 2019-01-11 21:49 ./usr/bin/maf-join -rwxr-xr-x root/root 2027 2019-01-11 21:49 ./usr/bin/maf-sort -rwxr-xr-x root/root 4933 2019-01-11 21:49 ./usr/bin/maf-swap -rwxr-xr-x root/root 234 2019-01-11 21:49 ./usr/bin/parallel-fasta -rwxr-xr-x root/root 295 2019-01-11 21:49 ./usr/bin/parallel-fastq drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/share/ drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/share/doc-base/ -rw-r--r-- root/root 281 2019-01-11 21:49 ./usr/share/doc-base/last-align-manual -rw-r--r-- root/root 291 2019-01-11 21:49 ./usr/share/doc-base/last-align-scripts -rw-r--r-- root/root 295 2019-01-11 21:49 ./usr/share/doc-base/last-align-seeds drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/share/doc/last-align/ -rw-r--r-- root/root 12338 2018-12-26 07:28 ./usr/share/doc/last-align/FAQ.html -rw-r--r-- root/root 2947 2015-12-16 10:25 ./usr/share/doc/last-align/FAQ.txt -rw-r--r-- root/root 926 2018-12-26 07:28 ./usr/share/doc/last-align/Makefile -rw-r--r-- root/root 201 2019-01-11 21:49 ./usr/share/doc/last-align/NEWS.Debian.gz -rw-r--r-- root/root 179 2019-01-11 21:49 ./usr/share/doc/last-align/README.test -rw-r--r-- root/root 10092 2018-12-26 07:28 ./usr/share/doc/last-align/bisulfite.html -rw-r--r-- root/root 2719 2016-03-11 07:47 ./usr/share/doc/last-align/bisulfite.txt -rw-r--r-- root/root 1026 2019-01-11 21:49 ./usr/share/doc/last-align/changelog.Debian.gz -rw-r--r-- root/root 1037 2019-01-11 21:49 ./usr/share/doc/last-align/copyright drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/share/doc/last-align/examples/ -rw-r--r-- root/root 17124 2013-05-23 00:23 ./usr/share/doc/last-align/examples/chickenMito.fa -rw-r--r-- root/root 16786 2013-05-23 00:23 ./usr/share/doc/last-align/examples/fuguMito.fa -rw-r--r-- root/root 16914 2013-05-23 00:23 ./usr/share/doc/last-align/examples/humanMito.fa -rwxr-xr-x root/root 1488 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite-paired.sh -rwxr-xr-x root/root 907 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite.sh -rw-r--r-- root/root 16636 2013-05-23 00:23 ./usr/share/doc/last-align/examples/mouseMito.fa -rw-r--r-- root/root 133732 2014-07-30 11:08 ./usr/share/doc/last-align/examples/multiMito.maf -rwxr-xr-x root/root 964 2014-10-07 11:04 ./usr/share/doc/last-align/examples/multiMito.sh -rw-r--r-- root/root 28889 2015-01-30 10:22 ./usr/share/doc/last-align/examples/myalns.maf -rw-r--r-- root/root 712 2013-05-23 00:23 ./usr/share/doc/last-align/examples/titv212.mat -rw-r--r-- root/root 408 2015-09-18 09:28 ./usr/share/doc/last-align/examples/ublast.seed -rw-r--r-- root/root 539 2013-05-23 00:23 ./usr/share/doc/last-align/examples/vertebrateMito.gc -rw-r--r-- root/root 260 2015-09-18 09:28 ./usr/share/doc/last-align/last-doc.css -rw-r--r-- root/root 20379 2018-12-26 07:28 ./usr/share/doc/last-align/last-dotplot.html -rw-r--r-- root/root 2795 2018-12-09 23:26 ./usr/share/doc/last-align/last-dotplot.txt.gz -rw-r--r-- root/root 12084 2018-12-26 07:28 ./usr/share/doc/last-align/last-evalues.html -rw-r--r-- root/root 1870 2015-08-31 09:57 ./usr/share/doc/last-align/last-evalues.txt.gz -rw-r--r-- root/root 10452 2018-12-26 07:28 ./usr/share/doc/last-align/last-map-probs.html -rw-r--r-- root/root 2687 2016-09-01 09:26 ./usr/share/doc/last-align/last-map-probs.txt -rw-r--r-- root/root 18722 2018-12-26 07:28 ./usr/share/doc/last-align/last-matrices.html -rw-r--r-- root/root 3058 2015-09-18 09:29 ./usr/share/doc/last-align/last-matrices.txt.gz -rw-r--r-- root/root 14658 2018-12-26 07:28 ./usr/share/doc/last-align/last-pair-probs.html -rw-r--r-- root/root 2145 2016-09-01 09:26 ./usr/share/doc/last-align/last-pair-probs.txt.gz -rw-r--r-- root/root 12854 2018-12-26 07:28 ./usr/share/doc/last-align/last-papers.html -rw-r--r-- root/root 2310 2018-09-05 11:49 ./usr/share/doc/last-align/last-papers.txt.gz -rw-r--r-- root/root 9811 2018-12-26 07:28 ./usr/share/doc/last-align/last-parallel.html -rw-r--r-- root/root 2546 2018-12-26 07:28 ./usr/share/doc/last-align/last-parallel.txt -rw-r--r-- root/root 7807 2018-12-26 07:29 ./usr/share/doc/last-align/last-postmask.html -rw-r--r-- root/root 998 2014-10-07 11:04 ./usr/share/doc/last-align/last-postmask.txt -rw-r--r-- root/root 9531 2018-12-26 07:29 ./usr/share/doc/last-align/last-repeats.html -rw-r--r-- root/root 2373 2015-08-03 07:16 ./usr/share/doc/last-align/last-repeats.txt -rw-r--r-- root/root 1472 2015-10-27 09:33 ./usr/share/doc/last-align/last-scripts.txt -rw-r--r-- root/root 11037 2018-12-26 07:29 ./usr/share/doc/last-align/last-seeds.html -rw-r--r-- root/root 3385 2015-09-18 09:29 ./usr/share/doc/last-align/last-seeds.txt -rw-r--r-- root/root 22880 2018-12-26 07:29 ./usr/share/doc/last-align/last-split.html -rw-r--r-- root/root 4096 2018-12-26 07:28 ./usr/share/doc/last-align/last-split.txt.gz -rw-r--r-- root/root 16363 2018-12-26 07:29 ./usr/share/doc/last-align/last-train.html -rw-r--r-- root/root 2229 2018-10-30 12:22 ./usr/share/doc/last-align/last-train.txt.gz -rw-r--r-- root/root 13736 2018-12-26 07:29 ./usr/share/doc/last-align/last-tuning.html -rw-r--r-- root/root 2303 2018-05-07 01:54 ./usr/share/doc/last-align/last-tuning.txt.gz -rw-r--r-- root/root 20739 2018-12-26 07:29 ./usr/share/doc/last-align/last-tutorial.html -rw-r--r-- root/root 3755 2018-12-26 07:28 ./usr/share/doc/last-align/last-tutorial.txt.gz -rw-r--r-- root/root 11066 2018-12-26 07:29 ./usr/share/doc/last-align/last.html -rw-r--r-- root/root 3319 2017-10-06 08:41 ./usr/share/doc/last-align/last.txt -rw-r--r-- root/root 36772 2018-12-26 07:29 ./usr/share/doc/last-align/lastal.html -rw-r--r-- root/root 8391 2018-10-30 12:22 ./usr/share/doc/last-align/lastal.txt.gz -rw-r--r-- root/root 18916 2018-12-26 07:29 ./usr/share/doc/last-align/lastdb.html -rw-r--r-- root/root 3678 2018-10-30 12:22 ./usr/share/doc/last-align/lastdb.txt.gz -rw-r--r-- root/root 12309 2018-12-26 07:29 ./usr/share/doc/last-align/maf-convert.html -rw-r--r-- root/root 3875 2017-10-06 08:41 ./usr/share/doc/last-align/maf-convert.txt -rw-r--r-- root/root 7380 2018-12-26 07:29 ./usr/share/doc/last-align/maf-cut.html -rw-r--r-- root/root 521 2018-04-20 14:43 ./usr/share/doc/last-align/maf-cut.txt -rw-r--r-- root/root 639 2019-01-11 21:49 ./usr/share/doc/last-align/run-unit-test -rw-r--r-- root/root 2356 2014-11-17 08:17 ./usr/share/doc/last-align/tag-seeds.txt.gz drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/share/man/ drwxr-xr-x root/root 0 2019-01-11 21:49 ./usr/share/man/man1/ -rw-r--r-- root/root 342 2019-01-11 21:49 ./usr/share/man/man1/fastq-interleave.1.gz -rw-r--r-- root/root 1245 2019-01-11 21:49 ./usr/share/man/man1/last-dotplot.1.gz -rw-r--r-- root/root 429 2019-01-11 21:49 ./usr/share/man/man1/last-map-probs.1.gz -rw-r--r-- root/root 324 2019-01-11 21:49 ./usr/share/man/man1/last-merge-batches.1.gz -rw-r--r-- root/root 637 2019-01-11 21:49 ./usr/share/man/man1/last-pair-probs.1.gz -rw-r--r-- root/root 324 2019-01-11 21:49 ./usr/share/man/man1/last-postmask.1.gz -rw-r--r-- root/root 760 2019-01-11 21:49 ./usr/share/man/man1/last-split.1.gz -rw-r--r-- root/root 759 2019-01-11 21:49 ./usr/share/man/man1/last-split8.1.gz -rw-r--r-- root/root 1035 2019-01-11 21:49 ./usr/share/man/man1/last-train.1.gz -rw-r--r-- root/root 1683 2019-01-11 21:49 ./usr/share/man/man1/lastal.1.gz -rw-r--r-- root/root 1685 2019-01-11 21:49 ./usr/share/man/man1/lastal8.1.gz -rw-r--r-- root/root 795 2019-01-11 21:49 ./usr/share/man/man1/lastdb.1.gz -rw-r--r-- root/root 609 2019-01-11 21:49 ./usr/share/man/man1/maf-convert.1.gz -rw-r--r-- root/root 278 2019-01-11 21:49 ./usr/share/man/man1/maf-join.1.gz -rw-r--r-- root/root 309 2019-01-11 21:49 ./usr/share/man/man1/maf-sort.1.gz -rw-r--r-- root/root 333 2019-01-11 21:49 ./usr/share/man/man1/maf-swap.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 115000 Build-Time: 208 Distribution: disco-proposed Host Architecture: i386 Install-Time: 18 Job: last-align_963-1.dsc Machine Architecture: amd64 Package: last-align Package-Time: 228 Source-Version: 963-1 Space: 115000 Status: successful Version: 963-1 -------------------------------------------------------------------------------- Finished at 20190112-0514 Build needed 00:03:48, 115000k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16266179 Scanning for processes to kill in build PACKAGEBUILD-16266179