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last-align package

last-align 983-1ubuntu1 source package in Ubuntu

Changelog

last-align (983-1ubuntu1) focal; urgency=medium

  * Build-depend on python2.
  * Recommend python2 instead of python.
  * Use python2 as shebang.

 -- Matthias Klose <email address hidden>  Thu, 24 Oct 2019 19:47:25 +0200

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Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
last-align_983.orig.tar.xz 391.4 KiB 469ec5bdf0e75ff985a810233e86b3c36c2d8875249558759590d7f5ebed0375
last-align_983-1ubuntu1.debian.tar.xz 9.8 KiB 88914eaba991ac2dd7d444a48dd6ece921bbc93ff09cad6e17d4a8ea51868d9f
last-align_983-1ubuntu1.dsc 2.0 KiB a5b7b72931f7da694c553c880edb2f21f4e8bacbad14639685a0d2f51b25afbd

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Binary packages built by this source

last-align: genome-scale comparison of biological sequences

 LAST is software for comparing and aligning sequences, typically DNA or
 protein sequences. LAST is similar to BLAST, but it copes better with very
 large amounts of sequence data. Here are two things LAST is good at:
 .
  * Comparing large (e.g. mammalian) genomes.
  * Mapping lots of sequence tags onto a genome.
 .
 The main technical innovation is that LAST finds initial matches based on
 their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
 This allows one to map tags to genomes without repeat-masking, without becoming
 overwhelmed by repetitive hits. To find these variable-sized matches, it uses
 a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
 discontiguous suffix array, analogous to spaced seeds.

last-align-dbgsym: debug symbols for last-align