libbio-db-gff-perl 1.7.4-1 source package in Ubuntu


libbio-db-gff-perl (1.7.4-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.4.1

 -- Michael R. Crusoe <email address hidden>  Mon, 13 Jan 2020 13:16:18 +0100

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Uploaded by:
Michael R. Crusoe
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Original maintainer:
Michael R. Crusoe
Medium Urgency

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Focal: [FULLYBUILT] amd64


File Size SHA-256 Checksum
libbio-db-gff-perl_1.7.4-1.dsc 2.1 KiB 6f8e8c6fa15c789f64195e7e79dd33bdf67baa7ea1cf0ec0a74d0d13b21a5e7d
libbio-db-gff-perl_1.7.4.orig.tar.gz 274.9 KiB 9becc9df6f6b7c5174aa0b818e7c6a0f2feb92aacf3ac2bd94071edc65b81267
libbio-db-gff-perl_1.7.4-1.debian.tar.xz 1.9 KiB 9fa118d284e408097733127e7733f15fcefd19cb40f1297d43fdf3c435a8ffc4

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libbio-db-gff-perl: Storage and retrieval of sequence annotation data

 Bio::DB::GFF provides fast indexed access to a sequence annotation database.
 It supports multiple database types (ACeDB, relational), and multiple schemas
 through a system of adaptors and aggregators.
 The following operations are supported by this module:
  - retrieving a segment of sequence based on the ID of a landmark
  - retrieving the DNA from that segment
  - finding all annotations that overlap with the segment
  - finding all annotations that are completely contained within the
  - retrieving all annotations of a particular type, either within a
 segment, or globally
  - conversion from absolute to relative coordinates and back again,
 using any arbitrary landmark for the relative coordinates
  - using a sequence segment to create new segments based on relative