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libbio-db-gff-perl package

libbio-db-gff-perl 1.7.4-1 source package in Ubuntu

Changelog

libbio-db-gff-perl (1.7.4-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.4.1

 -- Michael R. Crusoe <email address hidden>  Mon, 13 Jan 2020 13:16:18 +0100

Upload details

Uploaded by:
Michael R. Crusoe
Uploaded to:
Sid
Original maintainer:
Michael R. Crusoe
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Lunar release universe misc
Kinetic release universe misc
Jammy release universe misc
Focal release universe misc

Builds

Focal: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
libbio-db-gff-perl_1.7.4-1.dsc 2.1 KiB 6f8e8c6fa15c789f64195e7e79dd33bdf67baa7ea1cf0ec0a74d0d13b21a5e7d
libbio-db-gff-perl_1.7.4.orig.tar.gz 274.9 KiB 9becc9df6f6b7c5174aa0b818e7c6a0f2feb92aacf3ac2bd94071edc65b81267
libbio-db-gff-perl_1.7.4-1.debian.tar.xz 1.9 KiB 9fa118d284e408097733127e7733f15fcefd19cb40f1297d43fdf3c435a8ffc4

Available diffs

No changes file available.

Binary packages built by this source

libbio-db-gff-perl: Storage and retrieval of sequence annotation data

 Bio::DB::GFF provides fast indexed access to a sequence annotation database.
 It supports multiple database types (ACeDB, relational), and multiple schemas
 through a system of adaptors and aggregators.
 .
 The following operations are supported by this module:
 .
  - retrieving a segment of sequence based on the ID of a landmark
 .
  - retrieving the DNA from that segment
 .
  - finding all annotations that overlap with the segment
 .
  - finding all annotations that are completely contained within the
 segment
 .
  - retrieving all annotations of a particular type, either within a
 segment, or globally
 .
  - conversion from absolute to relative coordinates and back again,
 using any arbitrary landmark for the relative coordinates
 .
  - using a sequence segment to create new segments based on relative
 offsets