https://launchpad.net/ubuntu/+source/libbio-samtools-perl/1.43-2/+build/16354687 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-010 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:45 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_166 python-lpbuildd_166 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Feb 17:12:41 ntpdate[1823]: adjust time server 10.211.37.1 offset -0.000334 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16354687 /home/buildd/filecache-default/1b8bd95dfc080fb8062b439d66609df4d6cce84f Creating target for build PACKAGEBUILD-16354687 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16354687 Starting target for build PACKAGEBUILD-16354687 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16354687 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16354687 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16354687 Updating target for build PACKAGEBUILD-16354687 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 Packages [993 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe i386 Packages [8974 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5238 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 Packages [66.7 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [30.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 Packages [231 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [123 kB] Fetched 16.6 MB in 9s (1924 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libreadline7 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: gcc-9-base libreadline8 The following packages will be upgraded: adduser apt bash binutils binutils-common binutils-i686-linux-gnu bsdutils ca-certificates coreutils cpp-8 dash debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-8 gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libip4tc0 libitm1 libjson-c3 liblz4-1 liblzma5 libmount1 libmpfr6 libmpx2 libnettle6 libperl5.28 libpng16-16 libquadmath0 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login lsb-base mount passwd perl perl-base perl-modules-5.28 pkgbinarymangler readline-common sed systemd systemd-sysv tar tzdata util-linux xz-utils zlib1g 97 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 66.9 MB of archives. After this operation, 8136 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main i386 debianutils i386 4.8.6.1 [85.9 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 bash i386 5.0-2ubuntu1 [677 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main i386 bsdutils i386 1:2.33.1-0.1ubuntu1 [65.9 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 coreutils i386 8.30-1ubuntu1 [1316 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 tar i386 1.30+dfsg-5 [265 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main i386 dpkg i386 1.19.2ubuntu2 [1124 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libperl5.28 i386 5.28.1-4 [3445 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main i386 perl i386 5.28.1-4 [204 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 perl-base i386 5.28.1-4 [1602 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main i386 perl-modules-5.28 all 5.28.1-4 [2811 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main i386 libdb5.3 i386 5.3.28+dfsg1-0.3 [737 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main i386 libgdbm6 i386 1.18.1-2build1 [32.0 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main i386 libgdbm-compat4 i386 1.18.1-2build1 [6708 B] Get:14 http://ftpmaster.internal/ubuntu disco/main i386 zlib1g i386 1:1.2.11.dfsg-1ubuntu2 [55.9 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main i386 debconf all 1.5.70 [122 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main i386 dash i386 0.5.10.2-4ubuntu1 [90.8 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main i386 findutils i386 4.6.0+git+20190105-2 [343 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main i386 grep i386 3.3-1 [155 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main i386 gzip i386 1.9-3 [94.8 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main i386 libsmartcols1 i386 2.33.1-0.1ubuntu1 [98.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main i386 libuuid1 i386 2.33.1-0.1ubuntu1 [21.9 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main i386 libblkid1 i386 2.33.1-0.1ubuntu1 [147 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main i386 libfdisk1 i386 2.33.1-0.1ubuntu1 [190 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main i386 libmount1 i386 2.33.1-0.1ubuntu1 [158 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main i386 fdisk i386 2.33.1-0.1ubuntu1 [126 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main i386 login i386 1:4.5-1.1ubuntu1 [266 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main i386 util-linux i386 2.33.1-0.1ubuntu1 [1026 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main i386 sed i386 4.7-1 [193 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main i386 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 libnettle6 i386 3.4.1-1 [128 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 libhogweed4 i386 3.4.1-1 [142 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main i386 libgnutls30 i386 3.6.5-2ubuntu1 [770 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-9-base i386 9-20190202-1ubuntu1 [17.1 kB] Get:34 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc1 i386 1:9-20190202-1ubuntu1 [47.9 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main i386 liblz4-1 i386 1.8.3-1ubuntu1 [61.2 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main i386 liblzma5 i386 5.2.4-1 [99.7 kB] Get:37 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++6 i386 9-20190202-1ubuntu1 [545 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main i386 libudev1 i386 240-5ubuntu3 [73.1 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main i386 libzstd1 i386 1.3.8+dfsg-3 [225 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main i386 libapt-pkg5.0 i386 1.8.0~rc2 [897 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage-common all 2.8-2 [7016 B] Get:42 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage1 i386 2.8-2 [94.2 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main i386 passwd i386 1:4.5-1.1ubuntu1 [817 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main i386 adduser all 3.118ubuntu1 [163 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main i386 libgpg-error0 i386 1.35-1 [62.3 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main i386 gpgv i386 2.2.12-1ubuntu3 [217 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main i386 apt i386 1.8.0~rc2 [1198 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main i386 systemd-sysv i386 240-5ubuntu3 [9380 B] Get:49 http://ftpmaster.internal/ubuntu disco/main i386 libargon2-1 i386 0~20171227-0.2 [23.5 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main i386 libjson-c3 i386 0.12.1+ds-2 [24.0 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libcryptsetup12 i386 2:2.0.6-1ubuntu1 [157 kB] Get:52 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libip4tc0 i386 1.8.2-3ubuntu1 [21.5 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main i386 mount i386 2.33.1-0.1ubuntu1 [117 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main i386 systemd i386 240-5ubuntu3 [3463 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main i386 libsystemd0 i386 240-5ubuntu3 [267 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main i386 libext2fs2 i386 1.44.5-1 [186 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main i386 e2fsprogs i386 1.44.5-1 [550 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main i386 init i386 1.56+nmu1 [6076 B] Get:59 http://ftpmaster.internal/ubuntu disco/main i386 libcap-ng0 i386 0.7.9-2 [11.1 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main i386 libdebconfclient0 i386 0.246ubuntu1 [6436 B] Get:61 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libubsan1 i386 9-20190202-1ubuntu1 [148 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main i386 libmpfr6 i386 4.0.2-1 [246 kB] Get:63 http://ftpmaster.internal/ubuntu disco-proposed/main i386 g++-8 i386 8.2.0-16ubuntu1 [10.1 MB] Get:64 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8 i386 8.2.0-16ubuntu1 [9841 kB] Get:65 http://ftpmaster.internal/ubuntu disco-proposed/main i386 cpp-8 i386 8.2.0-16ubuntu1 [8977 kB] Get:66 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libcc1-0 i386 9-20190202-1ubuntu1 [49.3 kB] Get:67 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils-i686-linux-gnu i386 2.32-1ubuntu1 [2006 kB] Get:68 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libbinutils i386 2.32-1ubuntu1 [509 kB] Get:69 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils i386 2.32-1ubuntu1 [3396 B] Get:70 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils-common i386 2.32-1ubuntu1 [200 kB] Get:71 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgomp1 i386 9-20190202-1ubuntu1 [94.5 kB] Get:72 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libitm1 i386 9-20190202-1ubuntu1 [30.7 kB] Get:73 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libatomic1 i386 9-20190202-1ubuntu1 [9716 B] Get:74 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libasan5 i386 9-20190202-1ubuntu1 [408 kB] Get:75 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libmpx2 i386 8.2.0-16ubuntu1 [13.0 kB] Get:76 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libquadmath0 i386 9-20190202-1ubuntu1 [230 kB] Get:77 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++-8-dev i386 8.2.0-16ubuntu1 [1588 kB] Get:78 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc-8-dev i386 8.2.0-16ubuntu1 [2305 kB] Get:79 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8-base i386 8.2.0-16ubuntu1 [18.8 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main i386 libcom-err2 i386 1.44.5-1 [9708 B] Get:81 http://ftpmaster.internal/ubuntu disco/main i386 libss2 i386 1.44.5-1 [11.6 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main i386 lsb-base all 10.2018112800ubuntu1 [12.6 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main i386 ca-certificates all 20190110 [146 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main i386 readline-common all 8.0-1 [53.4 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main i386 libreadline8 i386 8.0-1 [133 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main i386 libsqlite3-0 i386 3.26.0+fossilbc891ac6b-2 [566 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main i386 tzdata all 2018i-1 [189 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main i386 xz-utils i386 5.2.4-1 [87.0 kB] Get:89 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libpng16-16 i386 1.6.36-5~build2 [187 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main i386 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main i386 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main i386 e2fslibs i386 1.44.5-1 [2704 B] Get:93 http://ftpmaster.internal/ubuntu disco/main i386 libassuan0 i386 2.5.2-1 [37.4 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main i386 gpg i386 2.2.12-1ubuntu3 [514 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main i386 gpgconf i386 2.2.12-1ubuntu3 [130 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main i386 gpg-agent i386 2.2.12-1ubuntu3 [249 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main i386 libcomerr2 i386 1.44.5-1 [2700 B] Get:98 http://ftpmaster.internal/ubuntu disco/main i386 linux-libc-dev i386 4.19.0-12.13 [1070 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main i386 pkgbinarymangler all 144 [55.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.9 MB in 2s (32.5 MB/s) (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6.1_i386.deb ... Unpacking debianutils (4.8.6.1) over (4.8.6) ... Setting up debianutils (4.8.6.1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../bash_5.0-2ubuntu1_i386.deb ... Unpacking bash (5.0-2ubuntu1) over (4.4.18-2ubuntu3) ... Setting up bash (5.0-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.33.1-0.1ubuntu1_i386.deb ... Unpacking bsdutils (1:2.33.1-0.1ubuntu1) over (1:2.32-0.1ubuntu2) ... Setting up bsdutils (1:2.33.1-0.1ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-1ubuntu1_i386.deb ... Unpacking coreutils (8.30-1ubuntu1) over (8.28-1ubuntu2) ... Setting up coreutils (8.30-1ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-5_i386.deb ... Unpacking tar (1.30+dfsg-5) over (1.30+dfsg-3) ... Setting up tar (1.30+dfsg-5) ... (Reading database ... 12658 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_i386.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12658 files and directories currently installed.) Preparing to unpack .../libperl5.28_5.28.1-4_i386.deb ... Unpacking libperl5.28:i386 (5.28.1-4) over (5.28.1-3) ... Preparing to unpack .../perl_5.28.1-4_i386.deb ... Unpacking perl (5.28.1-4) over (5.28.1-3) ... Preparing to unpack .../perl-base_5.28.1-4_i386.deb ... Unpacking perl-base (5.28.1-4) over (5.28.1-3) ... Setting up perl-base (5.28.1-4) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../perl-modules-5.28_5.28.1-4_all.deb ... Unpacking perl-modules-5.28 (5.28.1-4) over (5.28.1-3) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.3_i386.deb ... Unpacking libdb5.3:i386 (5.3.28+dfsg1-0.3) over (5.3.28+dfsg1-0.2) ... Setting up libdb5.3:i386 (5.3.28+dfsg1-0.3) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.18.1-2build1_i386.deb ... Unpacking libgdbm6:i386 (1.18.1-2build1) over (1.18.1-2) ... Preparing to unpack .../libgdbm-compat4_1.18.1-2build1_i386.deb ... Unpacking libgdbm-compat4:i386 (1.18.1-2build1) over (1.18.1-2) ... Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1ubuntu2_i386.deb ... Unpacking zlib1g:i386 (1:1.2.11.dfsg-1ubuntu2) over (1:1.2.11.dfsg-0ubuntu2) ... Setting up zlib1g:i386 (1:1.2.11.dfsg-1ubuntu2) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../debconf_1.5.70_all.deb ... Unpacking debconf (1.5.70) over (1.5.69) ... Setting up debconf (1.5.70) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4ubuntu1_i386.deb ... Unpacking dash (0.5.10.2-4ubuntu1) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20190105-2_i386.deb ... Unpacking findutils (4.6.0+git+20190105-2) over (4.6.0+git+20181018-1) ... Setting up findutils (4.6.0+git+20190105-2) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_i386.deb ... Unpacking grep (3.3-1) over (3.1-3) ... Setting up grep (3.3-1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.9-3_i386.deb ... Unpacking gzip (1.9-3) over (1.6-5ubuntu2) ... Setting up gzip (1.9-3) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.33.1-0.1ubuntu1_i386.deb ... Unpacking libsmartcols1:i386 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Setting up libsmartcols1:i386 (2.33.1-0.1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libuuid1_2.33.1-0.1ubuntu1_i386.deb ... Unpacking libuuid1:i386 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Setting up libuuid1:i386 (2.33.1-0.1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libblkid1_2.33.1-0.1ubuntu1_i386.deb ... Unpacking libblkid1:i386 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Setting up libblkid1:i386 (2.33.1-0.1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.33.1-0.1ubuntu1_i386.deb ... Unpacking libfdisk1:i386 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Setting up libfdisk1:i386 (2.33.1-0.1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libmount1_2.33.1-0.1ubuntu1_i386.deb ... Unpacking libmount1:i386 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Setting up libmount1:i386 (2.33.1-0.1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../fdisk_2.33.1-0.1ubuntu1_i386.deb ... Unpacking fdisk (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Setting up fdisk (2.33.1-0.1ubuntu1) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../util-linux_2.33.1-0.1ubuntu1_i386.deb ... Unpacking util-linux (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Replacing files in old package login (1:4.5-1ubuntu1) ... Preparing to unpack .../login_1%3a4.5-1.1ubuntu1_i386.deb ... Unpacking login (1:4.5-1.1ubuntu1) over (1:4.5-1ubuntu1) ... Setting up login (1:4.5-1.1ubuntu1) ... (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_i386.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../libnettle6_3.4.1-1_i386.deb ... Unpacking libnettle6:i386 (3.4.1-1) over (3.4.1~rc1-1) ... Setting up libnettle6:i386 (3.4.1-1) ... (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.4.1-1_i386.deb ... Unpacking libhogweed4:i386 (3.4.1-1) over (3.4.1~rc1-1) ... Setting up libhogweed4:i386 (3.4.1-1) ... (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_i386.deb ... Unpacking libgnutls30:i386 (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:i386 (3.6.5-2ubuntu1) ... Selecting previously unselected package gcc-9-base:i386. (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9-20190202-1ubuntu1_i386.deb ... Unpacking gcc-9-base:i386 (9-20190202-1ubuntu1) ... Setting up gcc-9-base:i386 (9-20190202-1ubuntu1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a9-20190202-1ubuntu1_i386.deb ... Unpacking libgcc1:i386 (1:9-20190202-1ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:i386 (1:9-20190202-1ubuntu1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.3-1ubuntu1_i386.deb ... Unpacking liblz4-1:i386 (1.8.3-1ubuntu1) over (1.8.2-1ubuntu1) ... Setting up liblz4-1:i386 (1.8.3-1ubuntu1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.4-1_i386.deb ... Unpacking liblzma5:i386 (5.2.4-1) over (5.2.2-1.3) ... Setting up liblzma5:i386 (5.2.4-1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libstdc++6_9-20190202-1ubuntu1_i386.deb ... Unpacking libstdc++6:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Setting up libstdc++6:i386 (9-20190202-1ubuntu1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libudev1_240-5ubuntu3_i386.deb ... Unpacking libudev1:i386 (240-5ubuntu3) over (239-7ubuntu15) ... Setting up libudev1:i386 (240-5ubuntu3) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3_i386.deb ... Unpacking libzstd1:i386 (1.3.8+dfsg-3) over (1.3.5+dfsg-1ubuntu1) ... Setting up libzstd1:i386 (1.3.8+dfsg-3) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.8.0~rc2_i386.deb ... Unpacking libapt-pkg5.0:i386 (1.8.0~rc2) over (1.8.0~alpha2ubuntu1) ... Setting up libapt-pkg5.0:i386 (1.8.0~rc2) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.8-1build2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_i386.deb ... Unpacking libsemanage1:i386 (2.8-2) over (2.8-1build2) ... Setting up libsemanage1:i386 (2.8-2) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.5-1.1ubuntu1_i386.deb ... Unpacking passwd (1:4.5-1.1ubuntu1) over (1:4.5-1ubuntu1) ... Setting up passwd (1:4.5-1.1ubuntu1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../adduser_3.118ubuntu1_all.deb ... Unpacking adduser (3.118ubuntu1) over (3.117ubuntu1) ... Setting up adduser (3.118ubuntu1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.35-1_i386.deb ... Unpacking libgpg-error0:i386 (1.35-1) over (1.32-3) ... Setting up libgpg-error0:i386 (1.35-1) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1ubuntu3_i386.deb ... Unpacking gpgv (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Setting up gpgv (2.2.12-1ubuntu3) ... (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../apt_1.8.0~rc2_i386.deb ... Unpacking apt (1.8.0~rc2) over (1.8.0~alpha2ubuntu1) ... Setting up apt (1.8.0~rc2) ... (Reading database ... 12668 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_240-5ubuntu3_i386.deb ... Unpacking systemd-sysv (240-5ubuntu3) over (239-7ubuntu15) ... Preparing to unpack .../1-libargon2-1_0~20171227-0.2_i386.deb ... Unpacking libargon2-1:i386 (0~20171227-0.2) over (0~20171227-0.1) ... Preparing to unpack .../2-libjson-c3_0.12.1+ds-2_i386.deb ... Unpacking libjson-c3:i386 (0.12.1+ds-2) over (0.12.1-1.3) ... Preparing to unpack .../3-libcryptsetup12_2%3a2.0.6-1ubuntu1_i386.deb ... Unpacking libcryptsetup12:i386 (2:2.0.6-1ubuntu1) over (2:2.0.4-2ubuntu2) ... Preparing to unpack .../4-libip4tc0_1.8.2-3ubuntu1_i386.deb ... Unpacking libip4tc0:i386 (1.8.2-3ubuntu1) over (1.6.1-2ubuntu3) ... Preparing to unpack .../5-mount_2.33.1-0.1ubuntu1_i386.deb ... Unpacking mount (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ... Preparing to unpack .../6-systemd_240-5ubuntu3_i386.deb ... Unpacking systemd (240-5ubuntu3) over (239-7ubuntu15) ... Preparing to unpack .../7-libsystemd0_240-5ubuntu3_i386.deb ... Unpacking libsystemd0:i386 (240-5ubuntu3) over (239-7ubuntu15) ... Setting up libsystemd0:i386 (240-5ubuntu3) ... (Reading database ... 12685 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.5-1_i386.deb ... Unpacking libext2fs2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libext2fs2:i386 (1.44.5-1) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1_i386.deb ... Unpacking e2fsprogs (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libargon2-1:i386 (0~20171227-0.2) ... Setting up libjson-c3:i386 (0.12.1+ds-2) ... Setting up libcryptsetup12:i386 (2:2.0.6-1ubuntu1) ... Setting up libip4tc0:i386 (1.8.2-3ubuntu1) ... Setting up util-linux (2.33.1-0.1ubuntu1) ... Setting up mount (2.33.1-0.1ubuntu1) ... Setting up systemd (240-5ubuntu3) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Setting up systemd-sysv (240-5ubuntu3) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../init_1.56+nmu1_i386.deb ... Unpacking init (1.56+nmu1) over (1.56) ... Preparing to unpack .../libcap-ng0_0.7.9-2_i386.deb ... Unpacking libcap-ng0:i386 (0.7.9-2) over (0.7.9-1build1) ... Setting up libcap-ng0:i386 (0.7.9-2) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.246ubuntu1_i386.deb ... Unpacking libdebconfclient0:i386 (0.246ubuntu1) over (0.244ubuntu1) ... Setting up libdebconfclient0:i386 (0.246ubuntu1) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../00-libubsan1_9-20190202-1ubuntu1_i386.deb ... Unpacking libubsan1:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../01-libmpfr6_4.0.2-1_i386.deb ... Unpacking libmpfr6:i386 (4.0.2-1) over (4.0.1-2) ... Preparing to unpack .../02-g++-8_8.2.0-16ubuntu1_i386.deb ... Unpacking g++-8 (8.2.0-16ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../03-gcc-8_8.2.0-16ubuntu1_i386.deb ... Unpacking gcc-8 (8.2.0-16ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../04-cpp-8_8.2.0-16ubuntu1_i386.deb ... Unpacking cpp-8 (8.2.0-16ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../05-libcc1-0_9-20190202-1ubuntu1_i386.deb ... Unpacking libcc1-0:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../06-binutils-i686-linux-gnu_2.32-1ubuntu1_i386.deb ... Unpacking binutils-i686-linux-gnu (2.32-1ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../07-libbinutils_2.32-1ubuntu1_i386.deb ... Unpacking libbinutils:i386 (2.32-1ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../08-binutils_2.32-1ubuntu1_i386.deb ... Unpacking binutils (2.32-1ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../09-binutils-common_2.32-1ubuntu1_i386.deb ... Unpacking binutils-common:i386 (2.32-1ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../10-libgomp1_9-20190202-1ubuntu1_i386.deb ... Unpacking libgomp1:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../11-libitm1_9-20190202-1ubuntu1_i386.deb ... Unpacking libitm1:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../12-libatomic1_9-20190202-1ubuntu1_i386.deb ... Unpacking libatomic1:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../13-libasan5_9-20190202-1ubuntu1_i386.deb ... Unpacking libasan5:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../14-libmpx2_8.2.0-16ubuntu1_i386.deb ... Unpacking libmpx2:i386 (8.2.0-16ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../15-libquadmath0_9-20190202-1ubuntu1_i386.deb ... Unpacking libquadmath0:i386 (9-20190202-1ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../16-libstdc++-8-dev_8.2.0-16ubuntu1_i386.deb ... Unpacking libstdc++-8-dev:i386 (8.2.0-16ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../17-libgcc-8-dev_8.2.0-16ubuntu1_i386.deb ... Unpacking libgcc-8-dev:i386 (8.2.0-16ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../18-gcc-8-base_8.2.0-16ubuntu1_i386.deb ... Unpacking gcc-8-base:i386 (8.2.0-16ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../19-libcom-err2_1.44.5-1_i386.deb ... Unpacking libcom-err2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../20-libss2_1.44.5-1_i386.deb ... Unpacking libss2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../21-lsb-base_10.2018112800ubuntu1_all.deb ... Unpacking lsb-base (10.2018112800ubuntu1) over (9.20170808ubuntu1) ... Preparing to unpack .../22-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) over (20180409) ... Preparing to unpack .../23-readline-common_8.0-1_all.deb ... Unpacking readline-common (8.0-1) over (7.0-5) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../24-libreadline8_8.0-1_i386.deb ... Unpacking libreadline8:i386 (8.0-1) ... Preparing to unpack .../25-libsqlite3-0_3.26.0+fossilbc891ac6b-2_i386.deb ... Unpacking libsqlite3-0:i386 (3.26.0+fossilbc891ac6b-2) over (3.26.0-2) ... Preparing to unpack .../26-tzdata_2018i-1_all.deb ... Unpacking tzdata (2018i-1) over (2018g-1) ... Preparing to unpack .../27-xz-utils_5.2.4-1_i386.deb ... Unpacking xz-utils (5.2.4-1) over (5.2.2-1.3) ... Preparing to unpack .../28-libpng16-16_1.6.36-5~build2_i386.deb ... Unpacking libpng16-16:i386 (1.6.36-5~build2) over (1.6.34-2) ... Preparing to unpack .../29-dpkg-dev_1.19.2ubuntu2_all.deb ... Unpacking dpkg-dev (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../30-libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../31-e2fslibs_1.44.5-1_i386.deb ... Unpacking e2fslibs:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../32-libassuan0_2.5.2-1_i386.deb ... Unpacking libassuan0:i386 (2.5.2-1) over (2.5.1-2) ... Preparing to unpack .../33-gpg_2.2.12-1ubuntu3_i386.deb ... Unpacking gpg (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Preparing to unpack .../34-gpgconf_2.2.12-1ubuntu3_i386.deb ... Unpacking gpgconf (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Preparing to unpack .../35-gpg-agent_2.2.12-1ubuntu3_i386.deb ... Unpacking gpg-agent (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Preparing to unpack .../36-libcomerr2_1.44.5-1_i386.deb ... Unpacking libcomerr2:i386 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../37-linux-libc-dev_4.19.0-12.13_i386.deb ... Unpacking linux-libc-dev:i386 (4.19.0-12.13) over (4.18.0-11.12) ... Preparing to unpack .../38-pkgbinarymangler_144_all.deb ... Unpacking pkgbinarymangler (144) over (143) ... Setting up libquadmath0:i386 (9-20190202-1ubuntu1) ... Setting up libcom-err2:i386 (1.44.5-1) ... Setting up libgomp1:i386 (9-20190202-1ubuntu1) ... Setting up libatomic1:i386 (9-20190202-1ubuntu1) ... Setting up readline-common (8.0-1) ... Setting up libss2:i386 (1.44.5-1) ... Setting up libcc1-0:i386 (9-20190202-1ubuntu1) ... Setting up pkgbinarymangler (144) ... Setting up e2fslibs:i386 (1.44.5-1) ... Setting up libpng16-16:i386 (1.6.36-5~build2) ... Setting up tzdata (2018i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Feb 5 17:13:47 UTC 2019. Universal Time is now: Tue Feb 5 17:13:47 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up linux-libc-dev:i386 (4.19.0-12.13) ... Setting up libmpfr6:i386 (4.0.2-1) ... Setting up e2fsprogs (1.44.5-1) ... Setting up lsb-base (10.2018112800ubuntu1) ... Setting up libgdbm6:i386 (1.18.1-2build1) ... Setting up binutils-common:i386 (2.32-1ubuntu1) ... Setting up perl-modules-5.28 (5.28.1-4) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up xz-utils (5.2.4-1) ... Setting up gcc-8-base:i386 (8.2.0-16ubuntu1) ... Setting up libsqlite3-0:i386 (3.26.0+fossilbc891ac6b-2) ... Setting up libcomerr2:i386 (1.44.5-1) ... Setting up libgdbm-compat4:i386 (1.18.1-2build1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up libasan5:i386 (9-20190202-1ubuntu1) ... Setting up libassuan0:i386 (2.5.2-1) ... Setting up libitm1:i386 (9-20190202-1ubuntu1) ... Setting up libreadline8:i386 (8.0-1) ... Setting up libubsan1:i386 (9-20190202-1ubuntu1) ... Setting up cpp-8 (8.2.0-16ubuntu1) ... Setting up libbinutils:i386 (2.32-1ubuntu1) ... Setting up libperl5.28:i386 (5.28.1-4) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up perl (5.28.1-4) ... Setting up libmpx2:i386 (8.2.0-16ubuntu1) ... Setting up binutils-i686-linux-gnu (2.32-1ubuntu1) ... Setting up libgcc-8-dev:i386 (8.2.0-16ubuntu1) ... Setting up binutils (2.32-1ubuntu1) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:i386 (8.2.0-16ubuntu1) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up gcc-8 (8.2.0-16ubuntu1) ... Setting up g++-8 (8.2.0-16ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16354687 i386 disco-proposed -c chroot:build-PACKAGEBUILD-16354687 --arch=i386 --dist=disco-proposed --nolog libbio-samtools-perl_1.43-2.dsc Initiating build PACKAGEBUILD-16354687 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:45 UTC 2019 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-010.buildd +==============================================================================+ | libbio-samtools-perl 1.43-2 (i386) 05 Feb 2019 17:13 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-2 Source Version: 1.43-2 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-BqdybX/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-BqdybX' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16354687/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-samtools-perl_1.43-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-STJ9Y_/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-STJ9Y_/apt_archive ./ InRelease Get:2 copy:/<>/resolver-STJ9Y_/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-STJ9Y_/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-STJ9Y_/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-STJ9Y_/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (101 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-STJ9Y_/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12697 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 12~), perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl Filtered Build-Depends: debhelper (>= 12~), perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl dpkg-deb: building package 'sbuild-build-depends-libbio-samtools-perl-dummy' in '/<>/resolver-fULS_H/apt_archive/sbuild-build-depends-libbio-samtools-perl-dummy.deb'. Ign:1 copy:/<>/resolver-fULS_H/apt_archive ./ InRelease Get:2 copy:/<>/resolver-fULS_H/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-fULS_H/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-fULS_H/apt_archive ./ Sources [253 B] Get:5 copy:/<>/resolver-fULS_H/apt_archive ./ Packages [569 B] Fetched 2941 B in 0s (112 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbio-samtools-perl build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libpipeline1 libsigsegv2 libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libpipeline1 libsigsegv2 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-libbio-samtools-perl-dummy zlib1g-dev 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 22.6 MB of archives. After this operation, 82.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-fULS_H/apt_archive ./ sbuild-build-depends-libbio-samtools-perl-dummy 0.invalid.0 [892 B] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 groff-base i386 1.22.4-2 [880 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main i386 libpipeline1 i386 1.5.1-1 [28.0 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main i386 man-db i386 2.8.5-1 [1112 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main i386 libmagic-mgc i386 1:5.35-2 [200 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main i386 libmagic1 i386 1:5.35-2 [80.0 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main i386 file i386 1:5.35-2 [22.8 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main i386 libelf1 i386 0.175-2 [49.9 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main i386 libglib2.0-0 i386 2.58.2-4 [1283 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main i386 libicu63 i386 63.1-6 [8435 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main i386 libxml2 i386 2.9.4+dfsg1-7ubuntu3 [658 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main i386 gettext-base i386 0.19.8.1-9 [51.2 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main i386 m4 i386 1.4.18-2 [202 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main i386 autoconf all 2.69-11 [322 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main i386 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main i386 autopoint all 0.19.8.1-9 [412 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main i386 libtool all 2.4.6-9 [194 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main i386 dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main i386 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main i386 libfile-stripnondeterminism-perl all 1.1.0-1 [13.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main i386 dh-strip-nondeterminism all 1.1.0-1 [5100 B] Get:27 http://ftpmaster.internal/ubuntu disco/main i386 dwz i386 0.12-3 [81.5 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main i386 libcroco3 i386 0.6.12-3 [87.9 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main i386 gettext i386 0.19.8.1-9 [905 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 po-debconf all 1.0.21 [233 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main i386 debhelper all 12ubuntu1 [887 kB] Get:33 http://ftpmaster.internal/ubuntu disco/universe i386 libbam-dev i386 0.1.19-4 [124 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main i386 libio-string-perl all 1.08-3 [11.1 kB] Get:35 http://ftpmaster.internal/ubuntu disco/universe i386 libdata-stag-perl all 0.14-2 [369 kB] Get:36 http://ftpmaster.internal/ubuntu disco/universe i386 libbio-perl-perl all 1.7.2-3 [4545 kB] Get:37 http://ftpmaster.internal/ubuntu disco/universe i386 libmodule-build-perl all 0.422400-1 [201 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1ubuntu2 [175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.6 MB in 1s (39.2 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 12697 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-2_i386.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-1_i386.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.35-2_i386.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.35-2_i386.deb ... Unpacking libmagic1:i386 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.35-2_i386.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../09-libelf1_0.175-2_i386.deb ... Unpacking libelf1:i386 (0.175-2) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../10-libglib2.0-0_2.58.2-4_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.2-4) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../11-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../12-libxml2_2.9.4+dfsg1-7ubuntu3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../14-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.1-4ubuntu3_all.deb ... Unpacking automake (1:1.16.1-4ubuntu3) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.1.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.1.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../26-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_12ubuntu1_all.deb ... Unpacking debhelper (12ubuntu1) ... Selecting previously unselected package libbam-dev. Preparing to unpack .../31-libbam-dev_0.1.19-4_i386.deb ... Unpacking libbam-dev (0.1.19-4) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../32-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../33-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../34-libbio-perl-perl_1.7.2-3_all.deb ... Unpacking libbio-perl-perl (1.7.2-3) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../35-libmodule-build-perl_0.422400-1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.422400-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../36-zlib1g-dev_1%3a1.2.11.dfsg-1ubuntu2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-1ubuntu2) ... Selecting previously unselected package sbuild-build-depends-libbio-samtools-perl-dummy. Preparing to unpack .../37-sbuild-build-depends-libbio-samtools-perl-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-libbio-samtools-perl-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libicu63:i386 (63.1-6) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libelf1:i386 (0.175-2) ... Setting up libglib2.0-0:i386 (2.58.2-4) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:i386 (1.5.1-1) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:i386 (0.9.1-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:i386 (1:5.35-2) ... Setting up libcroco3:i386 (0.6.12-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libbam-dev (0.1.19-4) ... Setting up libio-string-perl (1.08-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libmodule-build-perl (0.422400-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.35-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libtool (2.4.6-9) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up sbuild-build-depends-libbio-samtools-perl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-142-generic amd64 (i686) Toolchain package versions: binutils_2.32-1ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-16ubuntu1 gcc-8_8.2.0-16ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-16ubuntu1 libstdc++6_9-20190202-1ubuntu1 linux-libc-dev_4.19.0-12.13 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-1 apt_1.8.0~rc2 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_5.0-2ubuntu1 binutils_2.32-1ubuntu1 binutils-common_2.32-1ubuntu1 binutils-i686-linux-gnu_2.32-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20190110 coreutils_8.30-1ubuntu1 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-16ubuntu1 dash_0.5.10.2-4ubuntu1 debconf_1.5.70 debhelper_12ubuntu1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-16ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-16ubuntu1 gcc-8-base_8.2.0-16ubuntu1 gcc-9-base_9-20190202-1ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~rc2 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_9-20190202-1ubuntu1 libassuan0_2.5.2-1 libatomic1_9-20190202-1ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbam-dev_0.1.19-4 libbinutils_2.32-1ubuntu1 libbio-perl-perl_1.7.2-3 libblkid1_2.33.1-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-2 libcap2_1:2.25-1.2 libcc1-0_9-20190202-1ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.6-1ubuntu1 libdata-stag-perl_0.14-2 libdb5.3_5.3.28+dfsg1-0.3 libdebconfclient0_0.246ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1ubuntu1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.0-1 libgcc-8-dev_8.2.0-16ubuntu1 libgcc1_1:9-20190202-1ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2build1 libgdbm6_1.18.1-2build1 libglib2.0-0_2.58.2-4 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_9-20190202-1ubuntu1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libip4tc0_1.8.2-3ubuntu1 libisl19_0.20-2 libitm1_9-20190202-1ubuntu1 libjson-c3_0.12.1+ds-2 libkmod2_25-1ubuntu2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmodule-build-perl_0.422400-1 libmount1_2.33.1-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.2.0-16ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-1 libpng16-16_1.6.36-5~build2 libprocps7_2:3.3.15-2ubuntu1 libquadmath0_9-20190202-1ubuntu1 libreadline7_7.0-5 libreadline8_8.0-1 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.33.1-0.1ubuntu1 libsqlite3-0_3.26.0+fossilbc891ac6b-2 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-16ubuntu1 libstdc++6_9-20190202-1ubuntu1 libsystemd0_240-5ubuntu3 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-9 libubsan1_9-20190202-1ubuntu1 libuchardet0_0.0.6-3 libudev1_240-5ubuntu3 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.33.1-0.1ubuntu1 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-12.13 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu1 lsb-base_10.2018112800ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mount_2.33.1-0.1ubuntu1 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1.1ubuntu1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pinentry-curses_1.1.0-1build2 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbio-samtools-perl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-5ubuntu3 systemd-sysv_240-5ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-5 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.33.1-0.1ubuntu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 zlib1g-dev_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Feb 5 11:43:37 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-samtools-perl_1.43-2.dsc dpkg-source: info: extracting libbio-samtools-perl in libbio-samtools-perl-1.43 dpkg-source: info: unpacking libbio-samtools-perl_1.43.orig.tar.gz dpkg-source: info: unpacking libbio-samtools-perl_1.43-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16354687 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16354687 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16354687 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure perl Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=i686-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro" Found /usr/include/samtools/bam.h and /usr/lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a perl Build Building Bio-SamTools i686-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/i386-linux-gnu/perl/5.28/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c i686-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/i386-linux-gnu/perl/5.28/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam_sort_core’: lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function ‘bam_sort_core’; did you mean ‘bam_format1_core’? [-Wimplicit-function-declaration] bam_sort_core(is_by_qname,filename,prefix,max_mem); ^~~~~~~~~~~~~ bam_format1_core lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Header_view1’: lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function ‘bam_view1’; did you mean ‘bam_dup1’? [-Wimplicit-function-declaration] bam_view1(bamh,alignment); ^~~~~~~~~ bam_dup1 ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') i686-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L/usr/lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/<>/c_bin' dh_auto_test -a perl Build test --verbose 1 make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 5 17:14:33 2019 # Current time GMT: Tue Feb 5 17:14:33 2019 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 3 wallclock secs ( 0.10 usr 0.00 sys + 2.86 cusr 0.06 csys = 3.02 CPU) Result: PASS create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libbio-samtools-perl (in debian/libbio-samtools-perl); do_strip: , oemstrip: pkgstriptranslations: processing libbio-samtools-perl-dbgsym (in debian/.debhelper/libbio-samtools-perl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-samtools-perl/DEBIAN/control, package libbio-samtools-perl, directory debian/libbio-samtools-perl pkgstripfiles: Truncating usr/share/doc/libbio-samtools-perl/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-samtools-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-2_i386.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libbio-samtools-perl/dbgsym-root/DEBIAN/control, package libbio-samtools-perl-dbgsym, directory debian/.debhelper/libbio-samtools-perl/dbgsym-root dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libbio-samtools-perl/libbio-samtools-perl-dbgsym_1.43-2_i386.deb'. Renaming libbio-samtools-perl-dbgsym_1.43-2_i386.deb to libbio-samtools-perl-dbgsym_1.43-2_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libbio-samtools-perl_1.43-2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190205-1714 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-2_i386.changes: ----------------------------------------- Format: 1.8 Date: Tue, 05 Feb 2019 11:59:42 +0100 Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: i386 Version: 1.43-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Changes: libbio-samtools-perl (1.43-2) unstable; urgency=medium . * Team upload. . [ gregor herrmann ] * debian/copyright: change Copyright-Format 1.0 URL to HTTPS. * Remove Nathan Handler from Uploaders. Thanks for your work! . [ Salvatore Bonaccorso ] * Update Vcs-* headers for switch to salsa.debian.org . [ gregor herrmann ] * debian/*: update URLs from {search,www}.cpan.org to MetaCPAN. . [ Laurent Baillet ] * fix lintian file-contains-trailing-whitespace warning . [ Andreas Tille ] * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright * Lintian-override for script-with-language-extension since this is agreement in Debian Med team Checksums-Sha1: 88103588be943c99a787890e484547f3516e2c51 85576 libbio-samtools-perl-dbgsym_1.43-2_i386.ddeb b30b29dec9b788ff815eefb4c16f503fe71e7c30 5206 libbio-samtools-perl_1.43-2_i386.buildinfo 6f60f2273e9bd03e8b224bb72ecdf3fc54fba042 204432 libbio-samtools-perl_1.43-2_i386.deb Checksums-Sha256: 7825cf9c653d34b09688c06758afac33d5d6de99512862e1aec9875ebd3753b4 85576 libbio-samtools-perl-dbgsym_1.43-2_i386.ddeb 7c46dbba5a60230a529fdd5b5c2c5db945bed1339f5aa8aedcabb226156dd59d 5206 libbio-samtools-perl_1.43-2_i386.buildinfo bf4938433ce1ecc45f63c964a07620d0a2aa3d8e47a894fc37c12207acb75884 204432 libbio-samtools-perl_1.43-2_i386.deb Files: 7fb51fe583f3531a6d4a08434810d52f 85576 debug optional libbio-samtools-perl-dbgsym_1.43-2_i386.ddeb 98ba0d5d1baea86e56f4343acc517c40 5206 perl optional libbio-samtools-perl_1.43-2_i386.buildinfo 9da6a5fd7c4069e4f09f407b3936319f 204432 perl optional libbio-samtools-perl_1.43-2_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-2_i386.deb ------------------------------------ new debian package, version 2.0. size 204432 bytes: control archive=1752 bytes. 1063 bytes, 20 lines control 2423 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 680 Depends: perl (>= 5.28.1-4), perlapi-5.28.1, libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2019-02-05 10:59 ./ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/bin/ -rwxr-xr-x root/root 162356 2019-02-05 10:59 ./usr/bin/bam2bedgraph -rwxr-xr-x root/root 2087 2019-02-05 10:59 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2019-02-05 10:59 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2019-02-05 10:59 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/ -rw-r--r-- root/root 11925 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/AlignWrapper.pm -rw-r--r-- root/root 17627 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Alignment.pm -rw-r--r-- root/root 335 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/FetchIterator.pm -rw-r--r-- root/root 2404 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Pileup.pm -rw-r--r-- root/root 1891 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/PileupWrapper.pm -rw-r--r-- root/root 4636 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Query.pm -rw-r--r-- root/root 402 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/ReadIterator.pm -rw-r--r-- root/root 1046 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Target.pm -rw-r--r-- root/root 77823 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam.pm drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/ -rw-r--r-- root/root 2296 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/Constants.pm -rw-r--r-- root/root 12026 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/SamToGBrowse.pm -rw-r--r-- root/root 2284 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/Segment.pm drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/auto/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/Sam/ -rw-r--r-- root/root 0 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/Sam/Sam.bs -rw-r--r-- root/root 298020 2019-02-05 10:59 ./usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/Sam/Sam.so drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/share/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/share/doc/libbio-samtools-perl/ -rw-r--r-- root/root 1737 2019-02-05 10:59 ./usr/share/doc/libbio-samtools-perl/changelog.Debian.gz -rw-r--r-- root/root 11520 2019-02-05 10:59 ./usr/share/doc/libbio-samtools-perl/copyright drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 127 2019-02-05 10:59 ./usr/share/lintian/overrides/libbio-samtools-perl drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/share/man/ drwxr-xr-x root/root 0 2019-02-05 10:59 ./usr/share/man/man3/ -rw-r--r-- root/root 2563 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm.gz -rw-r--r-- root/root 7609 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Bam::Alignment.3pm.gz -rw-r--r-- root/root 2947 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Bam::Pileup.3pm.gz -rw-r--r-- root/root 2293 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm.gz -rw-r--r-- root/root 2959 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Bam::Query.3pm.gz -rw-r--r-- root/root 1964 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Bam::Target.3pm.gz -rw-r--r-- root/root 20887 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Sam.3pm.gz -rw-r--r-- root/root 2449 2019-02-05 10:59 ./usr/share/man/man3/Bio::DB::Sam::Constants.3pm.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 3780 Build-Time: 30 Distribution: disco-proposed Host Architecture: i386 Install-Time: 23 Job: libbio-samtools-perl_1.43-2.dsc Machine Architecture: amd64 Package: libbio-samtools-perl Package-Time: 55 Source-Version: 1.43-2 Space: 3780 Status: successful Version: 1.43-2 -------------------------------------------------------------------------------- Finished at 20190205-1714 Build needed 00:00:55, 3780k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16354687 Scanning for processes to kill in build PACKAGEBUILD-16354687