https://launchpad.net/ubuntu/+source/libbio-samtools-perl/1.43-3/+build/19420446 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-048 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 Jun 11:11:44 ntpdate[1943]: adjust time server 10.211.37.1 offset 0.025773 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19420446 --image-type chroot /home/buildd/filecache-default/a77e1afdcf3761e08e999e63510e3d2f5c5a8a8d Creating target for build PACKAGEBUILD-19420446 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19420446 Starting target for build PACKAGEBUILD-19420446 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19420446 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19420446 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19420446 Updating target for build PACKAGEBUILD-19420446 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [936 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [8413 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5170 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf Packages [75.2 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [36.9 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf Packages [568 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [330 kB] Fetched 16.6 MB in 6s (2598 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 ca-certificates cpp-9 dash debconf debianutils dpkg dpkg-dev e2fsprogs fdisk g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip libacl1 libapparmor1 libapt-pkg6.0 libasan5 libatomic1 libbinutils libblkid1 libbz2-1.0 libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-9-dev libgcc-s1 libgnutls30 libgomp1 libidn2-0 libjson-c4 libkmod2 libmount1 libncurses6 libncursesw6 libperl5.30 libprocps8 libseccomp2 libsmartcols1 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login logsave make mount ncurses-base ncurses-bin passwd perl perl-base perl-modules-5.30 pkgbinarymangler procps systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata util-linux 90 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 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Get:1 http://ftpmaster.internal/ubuntu groovy/main armhf libcrypt-dev armhf 1:4.4.15-1ubuntu1 [120 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libcrypt1 armhf 1:4.4.15-1ubuntu1 [93.4 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu7 [59.7 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf bsdutils armhf 1:2.35.1-5ubuntu2 [78.9 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf debianutils armhf 4.11 [84.3 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dpkg armhf 1.19.7ubuntu4 [1083 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-modules-5.30 all 5.30.3-3 [2740 kB] Get:8 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libperl5.30 armhf 5.30.3-3 [3270 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl armhf 5.30.3-3 [224 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-base armhf 5.30.3-3 [1410 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf bzip2 armhf 1.0.8-3 [31.8 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libbz2-1.0 armhf 1.0.8-3 [31.0 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf debconf all 1.5.74 [121 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf dash armhf 0.5.10.2-7 [79.2 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gzip armhf 1.10-2ubuntu1 [90.8 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf login armhf 1:4.8.1-1ubuntu6 [217 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-bin armhf 6.2-1 [164 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libblkid1 armhf 2.35.1-5ubuntu2 [120 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libuuid1 armhf 2.35.1-5ubuntu2 [21.5 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libfdisk1 armhf 2.35.1-5ubuntu2 [159 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libmount1 armhf 2.35.1-5ubuntu2 [132 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses6 armhf 6.2-1 [79.7 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf libncursesw6 armhf 6.2-1 [106 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libtinfo6 armhf 6.2-1 [73.6 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsmartcols1 armhf 2.35.1-5ubuntu2 [84.3 kB] Get:26 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf fdisk armhf 2.35.1-5ubuntu2 [113 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf util-linux armhf 2.35.1-5ubuntu2 [985 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-base all 6.2-1 [18.7 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main armhf sysvinit-utils armhf 2.96-3ubuntu1 [19.1 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main armhf libatomic1 armhf 10.1.0-3ubuntu1 [7184 B] Get:31 http://ftpmaster.internal/ubuntu groovy/main armhf libubsan1 armhf 10.1.0-3ubuntu1 [121 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main armhf libgomp1 armhf 10.1.0-3ubuntu1 [86.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-10-base armhf 10.1.0-3ubuntu1 [20.0 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-s1 armhf 10.1.0-3ubuntu1 [36.2 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main armhf libcc1-0 armhf 10.1.0-3ubuntu1 [34.6 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++6 armhf 10.1.0-3ubuntu1 [440 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-sysv armhf 245.5-3ubuntu1 [10.3 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-timesyncd armhf 245.5-3ubuntu1 [27.9 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main armhf libacl1 armhf 2.2.53-8 [16.0 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main armhf libapparmor1 armhf 2.13.3-7ubuntu6 [29.2 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2.4.3-1ubuntu3 [32.5 kB] Get:51 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf mount armhf 2.35.1-5ubuntu2 [112 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main armhf systemd armhf 245.5-3ubuntu1 [3644 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main armhf libsystemd0 armhf 245.5-3ubuntu1 [245 kB] Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libzstd1 armhf 1.4.5+dfsg-1 [276 kB] Get:55 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libapt-pkg6.0 armhf 2.1.6 [757 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main armhf gpgv armhf 2.2.20-1ubuntu1 [170 kB] Get:57 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf apt armhf 2.1.6 [1244 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main armhf logsave armhf 1.45.6-1ubuntu1 [9676 B] Get:59 http://ftpmaster.internal/ubuntu groovy/main armhf libext2fs2 armhf 1.45.6-1ubuntu1 [170 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main armhf e2fsprogs armhf 1.45.6-1ubuntu1 [510 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main armhf libcap-ng0 armhf 0.7.9-2.2 [9764 B] Get:62 http://ftpmaster.internal/ubuntu groovy/main armhf passwd armhf 1:4.8.1-1ubuntu6 [749 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main armhf libcom-err2 armhf 1.45.6-1ubuntu1 [8708 B] Get:64 http://ftpmaster.internal/ubuntu groovy/main armhf libprocps8 armhf 2:3.3.16-4ubuntu1 [29.9 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main armhf libss2 armhf 1.45.6-1ubuntu1 [9384 B] Get:66 http://ftpmaster.internal/ubuntu groovy/main armhf procps armhf 2:3.3.16-4ubuntu1 [222 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main armhf ca-certificates all 20190110ubuntu2 [145 kB] Get:68 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsqlite3-0 armhf 3.32.2-2 [469 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main armhf tzdata all 2020a-0ubuntu1 [293 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main armhf libctf0 armhf 2.34-7ubuntu1 [37.1 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main armhf binutils-arm-linux-gnueabihf armhf 2.34-7ubuntu1 [2093 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main armhf libbinutils armhf 2.34-7ubuntu1 [317 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main armhf binutils armhf 2.34-7ubuntu1 [3364 B] Get:74 http://ftpmaster.internal/ubuntu groovy/main armhf binutils-common armhf 2.34-7ubuntu1 [207 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main armhf libctf-nobfd0 armhf 2.34-7ubuntu1 [38.0 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main armhf libasan5 armhf 9.3.0-13ubuntu1 [387 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main armhf g++-9 armhf 9.3.0-13ubuntu1 [6688 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-9 armhf 9.3.0-13ubuntu1 [6554 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++-9-dev armhf 9.3.0-13ubuntu1 [1782 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-9-dev armhf 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19420446 armhf groovy-proposed -c chroot:build-PACKAGEBUILD-19420446 --arch=armhf --dist=groovy-proposed --nolog libbio-samtools-perl_1.43-3.dsc Initiating build PACKAGEBUILD-19420446 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-048.buildd +==============================================================================+ | libbio-samtools-perl 1.43-3 (armhf) 07 Jun 2020 11:12 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-3 Source Version: 1.43-3 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-iL0ixF/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-iL0ixF' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19420446/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-samtools-perl_1.43-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-i5sZ8u/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-i5sZ8u/apt_archive ./ InRelease Get:2 copy:/<>/resolver-i5sZ8u/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-i5sZ8u/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-i5sZ8u/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-i5sZ8u/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (87.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. 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Ign:1 copy:/<>/resolver-g0bhnn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-g0bhnn/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-g0bhnn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-g0bhnn/apt_archive ./ Sources [264 B] Get:5 copy:/<>/resolver-g0bhnn/apt_archive ./ Packages [578 B] Fetched 2961 B in 0s (96.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbio-samtools-perl build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-libbio-samtools-perl-dummy zlib1g-dev 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After this operation, 75.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-g0bhnn/apt_archive ./ sbuild-build-depends-libbio-samtools-perl-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf bsdmainutils armhf 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf groff-base armhf 1.22.4-5 [759 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf man-db armhf 2.9.2-1 [1082 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic-mgc armhf 1:5.38-5 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic1 armhf 1:5.38-5 [68.4 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf file armhf 1:5.38-5 [22.4 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libglib2.0-0 armhf 2.64.3-1 [1124 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf libicu66 armhf 66.1-2ubuntu2 [8222 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libxml2 armhf 2.9.10+dfsg-5 [546 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf m4 armhf 1.4.18-4 [187 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf automake all 1:1.16.2-1ubuntu1 [521 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libdebhelper-perl all 13.1ubuntu1 [64.0 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [17.1 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf dh-strip-nondeterminism all 1.8.1-1 [5232 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main armhf dwz armhf 0.13-5 [153 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main armhf debhelper all 13.1ubuntu1 [885 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/universe armhf libbam-dev armhf 0.1.19-4 [100 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main armhf libio-string-perl all 1.08-3 [11.1 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/universe armhf libdata-stag-perl all 0.14-2 [369 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/universe armhf libbio-perl-perl all 1.7.7-1 [2567 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/universe armhf libmodule-build-perl all 0.423100-1 [200 kB] Get:40 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libperl-dev armhf 5.30.3-3 [884 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu1 [150 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.8 MB in 1s (29.6 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 12565 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_armhf.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.2-1_armhf.deb ... Unpacking man-db (2.9.2-1) ... 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Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbio-perl-perl (1.7.7-1) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libxml2:armhf (2.9.10+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.1ubuntu1) ... Setting up sbuild-build-depends-libbio-samtools-perl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-7ubuntu1 dpkg-dev_1.19.7ubuntu4 g++-9_9.3.0-13ubuntu1 gcc-9_9.3.0-13ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-13ubuntu1 libstdc++6_10.1.0-3ubuntu1 linux-libc-dev_5.4.0-33.37 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-7ubuntu1 binutils-arm-linux-gnueabihf_2.34-7ubuntu1 binutils-common_2.34-7ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.35.1-5ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-3 ca-certificates_20190110ubuntu2 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-13ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1ubuntu1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu4 dpkg-dev_1.19.7ubuntu4 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.35.1-5ubuntu2 file_1:5.38-5 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-13ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10.1.0-3ubuntu1 gcc-9_9.3.0-13ubuntu1 gcc-9-base_9.3.0-13ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_2.13.3-7ubuntu6 libapt-pkg6.0_2.1.6 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-13ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10.1.0-3ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbam-dev_0.1.19-4 libbinutils_2.34-7ubuntu1 libbio-perl-perl_1.7.7-1 libblkid1_2.35.1-5ubuntu2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.2 libcap2_1:2.34-2 libcc1-0_10.1.0-3ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1ubuntu1 libcrypt1_1:4.4.15-1ubuntu1 libcryptsetup12_2:2.3.1-1ubuntu1 libctf-nobfd0_2.34-7ubuntu1 libctf0_2.34-7ubuntu1 libdata-stag-perl_0.14-2 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.19.7ubuntu4 libelf1_0.176-1.1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libfdisk1_2.35.1-5ubuntu2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-13ubuntu1 libgcc-s1_10.1.0-3ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-4ubuntu2 libgomp1_10.1.0-3ubuntu1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-7ubuntu1 libkmod2_27+20200310-2ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmodule-build-perl_0.423100-1 libmount1_2.35.1-5ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl-dev_5.30.3-3 libperl5.30_5.30.3-3 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-4ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu3 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.1-5ubuntu2 libsqlite3-0_3.32.2-2 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-13ubuntu1 libstdc++6_10.1.0-3ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.5-3ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-3ubuntu1 libuchardet0_0.0.7-1 libudev1_245.5-3ubuntu1 libunistring2_0.9.10-4 libuuid1_2.35.1-5ubuntu2 libxml2_2.9.10+dfsg-5 libzstd1_1.4.5+dfsg-1 linux-libc-dev_5.4.0-33.37 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-3 man-db_2.9.2-1 mawk_1.3.4.20200120-2 mount_2.35.1-5ubuntu2 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-3 perl-base_5.30.3-3 perl-modules-5.30_5.30.3-3 pinentry-curses_1.1.0-3build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-4ubuntu1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbio-samtools-perl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.5-3ubuntu1 systemd-sysv_245.5-3ubuntu1 systemd-timesyncd_245.5-3ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.35.1-5ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Jun 7 07:28:12 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-samtools-perl_1.43-3.dsc dpkg-source: info: extracting libbio-samtools-perl in libbio-samtools-perl-1.43 dpkg-source: info: unpacking libbio-samtools-perl_1.43.orig.tar.gz dpkg-source: info: unpacking libbio-samtools-perl_1.43-3.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19420446 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19420446 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19420446 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure perl Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro" Found /usr/include/samtools/bam.h and /usr/lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a perl Build Building Bio-SamTools arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam_sort_core’: lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function ‘bam_sort_core’; did you mean ‘bam_format1_core’? [-Wimplicit-function-declaration] 324 | bam_sort_core(is_by_qname,filename,prefix,max_mem); | ^~~~~~~~~~~~~ | bam_format1_core lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Header_view1’: lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function ‘bam_view1’ [-Wimplicit-function-declaration] 916 | bam_view1(bamh,alignment); | ^~~~~~~~~ ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L/usr/lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/<>/c_bin' dh_auto_test -a perl Build test --verbose 1 make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.030003 for linux # Current time local: Sun Jun 7 11:13:16 2020 # Current time GMT: Sun Jun 7 11:13:16 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 2 wallclock secs ( 0.10 usr 0.00 sys + 2.08 cusr 0.16 csys = 2.34 CPU) Result: PASS create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing libbio-samtools-perl (in debian/libbio-samtools-perl); do_strip: , oemstrip: pkgstriptranslations: processing libbio-samtools-perl-dbgsym (in debian/.debhelper/libbio-samtools-perl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-samtools-perl/DEBIAN/control, package libbio-samtools-perl, directory debian/libbio-samtools-perl pkgstripfiles: processing control file: debian/.debhelper/libbio-samtools-perl/dbgsym-root/DEBIAN/control, package libbio-samtools-perl-dbgsym, directory debian/.debhelper/libbio-samtools-perl/dbgsym-root dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libbio-samtools-perl/libbio-samtools-perl-dbgsym_1.43-3_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/libbio-samtools-perl/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-samtools-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-3_armhf.deb'. Renaming libbio-samtools-perl-dbgsym_1.43-3_armhf.deb to libbio-samtools-perl-dbgsym_1.43-3_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libbio-samtools-perl_1.43-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200607-1113 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3_armhf.changes: ------------------------------------------ Format: 1.8 Date: Sun, 07 Jun 2020 09:23:40 +0200 Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: armhf Version: 1.43-3 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Changes: libbio-samtools-perl (1.43-3) unstable; urgency=medium . * Team upload . [ gregor herrmann ] * debian/control: update Build-Depends for cross builds. * debian/watch: use uscan version 4. . [ Andreas Tille ] * Remove deprecated fields from upstream metadata * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 81faae639107be7863b03c142455b867cc88a4a5 93328 libbio-samtools-perl-dbgsym_1.43-3_armhf.ddeb d8fdfcdc99804a917a36514930a0778b6ff769d0 5269 libbio-samtools-perl_1.43-3_armhf.buildinfo c77033d1b7d2be33ba4a089d091fc2a3a88744ca 175644 libbio-samtools-perl_1.43-3_armhf.deb Checksums-Sha256: 5742a569d44024e32e9fb919114685903b78525f43f701ba10722cba27543e03 93328 libbio-samtools-perl-dbgsym_1.43-3_armhf.ddeb 043cfa5bb43b5763c201774bf8a106363be5483408dc77ffa0cd0bbde4f06134 5269 libbio-samtools-perl_1.43-3_armhf.buildinfo 2f23eae6fa50d0a8dbec62511f450e7cb1f9d13c481472cae96b5c7a0ff402c7 175644 libbio-samtools-perl_1.43-3_armhf.deb Files: 29ec2c8a912b5459c3da5a8f0420b972 93328 debug optional libbio-samtools-perl-dbgsym_1.43-3_armhf.ddeb 6bd5a454e337a5f6ac52bd8e3d34499d 5269 perl optional libbio-samtools-perl_1.43-3_armhf.buildinfo 4b3a2edabc12c6d7bccd2a265f81e044 175644 perl optional libbio-samtools-perl_1.43-3_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3_armhf.deb ------------------------------------- new debian package, version 2.0. size 175644 bytes: control archive=1764 bytes. 1064 bytes, 20 lines control 2493 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 484 Depends: perl (>= 5.30.3-3), perlapi-5.30.3, libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2020-06-07 07:23 ./ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/bin/ -rwxr-xr-x root/root 92752 2020-06-07 07:23 ./usr/bin/bam2bedgraph -rwxr-xr-x root/root 2087 2020-06-07 07:23 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2020-06-07 07:23 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2020-06-07 07:23 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/lib/ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/ drwxr-xr-x root/root 0 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/ -rw-r--r-- root/root 11925 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/AlignWrapper.pm -rw-r--r-- root/root 17627 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Alignment.pm -rw-r--r-- root/root 335 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/FetchIterator.pm -rw-r--r-- root/root 2404 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Pileup.pm -rw-r--r-- root/root 1891 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/PileupWrapper.pm -rw-r--r-- root/root 4636 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Query.pm -rw-r--r-- root/root 402 2020-06-07 07:23 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/ReadIterator.pm -rw-r--r-- root/root 1046 2020-06-07 07:23 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Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 3336 Build-Time: 22 Distribution: groovy-proposed Host Architecture: armhf Install-Time: 20 Job: libbio-samtools-perl_1.43-3.dsc Machine Architecture: arm64 Package: libbio-samtools-perl Package-Time: 43 Source-Version: 1.43-3 Space: 3336 Status: successful Version: 1.43-3 -------------------------------------------------------------------------------- Finished at 20200607-1113 Build needed 00:00:43, 3336k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19420446 Scanning for processes to kill in build PACKAGEBUILD-19420446