https://launchpad.net/ubuntu/+source/libbio-samtools-perl/1.43-3build2.1/+build/24303567 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-013 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_219~583~ubuntu20.04.1 python3-lpbuildd_219~583~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 22 Aug 10:52:17 ntpdate[1808]: adjust time server 10.211.37.1 offset 0.006097 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-24303567 --image-type chroot /home/buildd/filecache-default/c698bf6badd89264039f6cdfcd7c983f87611a3e Creating target for build PACKAGEBUILD-24303567 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-24303567 Starting target for build PACKAGEBUILD-24303567 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-24303567 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24303567 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-24303567 Updating target for build PACKAGEBUILD-24303567 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [110 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [114 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [270 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1323 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [13.5 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5652 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-security/main armhf Packages [164 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-security/main Translation-en [63.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-security/universe armhf Packages [69.3 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-security/universe Translation-en [37.5 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-updates/main armhf Packages [388 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-updates/main Translation-en [121 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-updates/universe armhf Packages [171 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-updates/universe Translation-en [71.5 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [76.0 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [32.3 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [55.9 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [24.0 kB] Fetched 23.1 MB in 7s (3337 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.32 perl-modules-5.32 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: gcc-12-base libperl5.34 libsemanage2 libsepol2 libssl3 perl-modules-5.34 The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential bzip2 ca-certificates coreutils cpp-11 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan6 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libprocps8 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lsb-base lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses pkgbinarymangler procps readline-common rpcsvc-proto sed sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata usrmerge util-linux xz-utils zlib1g 165 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 89.9 MB of archives. After this operation, 298 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu6 [63.7 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf libnsl-dev armhf 1.3.0-2build2 [66.1 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt-dev armhf 1:4.4.27-1 [122 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libc6-dev armhf 2.35-0ubuntu3.1 [1332 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libc-dev-bin armhf 2.35-0ubuntu3.1 [19.0 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-security/main armhf libtirpc-common all 1.3.2-2ubuntu0.1 [7766 B] Get:7 http://ftpmaster.internal/ubuntu jammy-security/main armhf libtirpc-dev armhf 1.3.2-2ubuntu0.1 [184 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-security/main armhf libssl3 armhf 3.0.2-0ubuntu1.6 [1579 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf libk5crypto3 armhf 1.19.2-2 [83.6 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5support0 armhf 1.19.2-2 [30.4 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5-3 armhf 1.19.2-2 [330 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libgssapi-krb5-2 armhf 1.19.2-2 [120 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libc6 armhf 2.35-0ubuntu3.1 [2518 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libc-bin armhf 2.35-0ubuntu3.1 [546 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf perl-modules-5.34 all 5.34.0-3ubuntu1 [2975 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main armhf libperl5.34 armhf 5.34.0-3ubuntu1 [4039 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main armhf perl armhf 5.34.0-3ubuntu1 [232 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf perl-base armhf 5.34.0-3ubuntu1 [1613 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf bzip2 armhf 1.0.8-5build1 [34.2 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-1.0 armhf 1.0.8-5build1 [31.7 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit-common all 1:3.0.7-1build1 [4726 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libcap-ng0 armhf 0.7.9-2.2build3 [10.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit1 armhf 1:3.0.7-1build1 [43.6 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf libpam0g armhf 1.4.0-11ubuntu2 [55.4 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt1 armhf 1:4.4.27-1 [94.0 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.8ubuntu3 [648 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm6 armhf 1.23-1 [30.0 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm-compat4 armhf 1.23-1 [6070 B] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf zlib1g armhf 1:1.2.11.dfsg-2ubuntu9.1 [51.6 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf debconf all 1.5.79ubuntu1 [126 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-security/main armhf libcom-err2 armhf 1.46.5-2ubuntu1.1 [8278 B] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf libkeyutils1 armhf 1.6.1-2ubuntu3 [8966 B] Get:33 http://ftpmaster.internal/ubuntu jammy-security/main armhf libtirpc3 armhf 1.3.2-2ubuntu0.1 [72.7 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf libnsl2 armhf 1.3.0-2build2 [36.6 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf linux-libc-dev armhf 5.15.0-47.51 [1288 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf gcc-12-base armhf 12-20220319-1ubuntu1 [18.9 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libgcc-s1 armhf 12-20220319-1ubuntu1 [42.7 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-updates/main armhf base-files armhf 12ubuntu4.2 [62.4 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf debianutils armhf 5.5-1ubuntu2 [106 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf bash armhf 5.1-6ubuntu1 [655 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf bsdutils armhf 1:2.37.2-4ubuntu3 [87.0 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf coreutils armhf 8.32-4.1ubuntu1 [1301 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf libgpg-error0 armhf 1.43-3 [61.9 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf libgcrypt20 armhf 1.9.4-3ubuntu3 [439 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf liblz4-1 armhf 1.9.3-2build2 [54.8 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma5 armhf 5.2.5-2ubuntu1 [87.0 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf libstdc++6 armhf 12-20220319-1ubuntu1 [616 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf libargon2-1 armhf 0~20171227-0.3 [21.0 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libblkid1 armhf 2.37.2-4ubuntu3 [136 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-8-0 armhf 10.39-3build1 [190 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf libselinux1 armhf 3.3-1build2 [66.8 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libudev1 armhf 249.11-0ubuntu3.4 [68.5 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libdevmapper1.02.1 armhf 2:1.02.175-2.1ubuntu4 [134 kB] Get:54 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libjson-c5 armhf 0.15-3~ubuntu1.22.04.1 [29.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libuuid1 armhf 2.37.2-4ubuntu3 [23.6 kB] Get:56 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libcryptsetup12 armhf 2:2.4.3-1ubuntu1.1 [189 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main armhf libgmp10 armhf 2:6.2.1+dfsg-3ubuntu1 [205 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf libnettle8 armhf 3.7.3-1build2 [174 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf libhogweed6 armhf 3.7.3-1build2 [187 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libunistring2 armhf 1.0-1 [533 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf libidn2-0 armhf 2.3.2-2build1 [67.6 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libffi8 armhf 3.4.2-4 [19.0 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf libp11-kit0 armhf 0.24.0-6build1 [219 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libtasn1-6 armhf 4.18.0-4build1 [36.3 kB] Get:65 http://ftpmaster.internal/ubuntu jammy-security/main armhf libgnutls30 armhf 3.7.3-4ubuntu1.1 [934 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-updates/main armhf systemd-sysv armhf 249.11-0ubuntu3.4 [10.5 kB] Get:67 http://ftpmaster.internal/ubuntu jammy-updates/main armhf systemd-timesyncd armhf 249.11-0ubuntu3.4 [31.0 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main armhf libacl1 armhf 2.3.1-1 [14.9 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libapparmor1 armhf 3.0.4-2ubuntu2.1 [33.1 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu5 [17.7 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libzstd1 armhf 1.4.8+dfsg-3build1 [285 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main armhf libkmod2 armhf 29-1ubuntu1 [40.9 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main armhf libmount1 armhf 2.37.2-4ubuntu3 [152 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main armhf libseccomp2 armhf 2.5.3-2ubuntu2 [46.8 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf login armhf 1:4.8.1-2ubuntu2 [186 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf util-linux armhf 2.37.2-4ubuntu3 [1130 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main armhf mount armhf 2.37.2-4ubuntu3 [125 kB] Get:78 http://ftpmaster.internal/ubuntu jammy-updates/main armhf systemd armhf 249.11-0ubuntu3.4 [4483 kB] Get:79 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libsystemd0 armhf 249.11-0ubuntu3.4 [294 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main armhf libxxhash0 armhf 0.8.1-1 [26.3 kB] Get:81 http://ftpmaster.internal/ubuntu jammy-updates/main armhf libapt-pkg6.0 armhf 2.4.7 [900 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf tar armhf 1.34+dfsg-1build3 [272 kB] Get:83 http://ftpmaster.internal/ubuntu jammy-security/main armhf dpkg armhf 1.21.1ubuntu2.1 [1189 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-3build1 [83.8 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf diffutils armhf 1:3.8-0ubuntu2 [164 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf findutils armhf 4.8.0-1ubuntu3 [323 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf grep armhf 3.7-1build1 [150 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main armhf gzip armhf 1.10-4ubuntu4 [95.3 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf hostname armhf 3.23ubuntu2 [10.7 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses6 armhf 6.3-2 [87.5 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf libncursesw6 armhf 6.3-2 [117 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main armhf libtinfo6 armhf 6.3-2 [87.9 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-bin armhf 6.3-2 [175 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main armhf sed armhf 4.8-1ubuntu2 [186 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main armhf libdebconfclient0 armhf 0.261ubuntu1 [6552 B] Get:96 http://ftpmaster.internal/ubuntu jammy/main armhf base-passwd armhf 3.5.52build1 [49.2 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main armhf init-system-helpers all 1.62 [38.5 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-base all 6.3-2 [20.1 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main armhf lsb-base all 11.1.0ubuntu4 [12.3 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main armhf sysvinit-utils armhf 3.01-1ubuntu1 [20.5 kB] Get:101 http://ftpmaster.internal/ubuntu jammy-security/main armhf gpgv armhf 2.2.27-3ubuntu2.1 [186 kB] Get:102 http://ftpmaster.internal/ubuntu jammy-updates/main armhf apt armhf 2.4.7 [1369 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main armhf libsepol2 armhf 3.3-1build1 [259 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage-common all 3.3-1build2 [9874 B] Get:105 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage2 armhf 3.3-1build2 [83.9 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main armhf passwd armhf 1:4.8.1-2ubuntu2 [740 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main armhf libpam-modules-bin armhf 1.4.0-11ubuntu2 [35.6 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main armhf libpam-modules armhf 1.4.0-11ubuntu2 [263 kB] Get:109 http://ftpmaster.internal/ubuntu jammy-security/main armhf logsave armhf 1.46.5-2ubuntu1.1 [9372 B] Get:110 http://ftpmaster.internal/ubuntu jammy-security/main armhf libext2fs2 armhf 1.46.5-2ubuntu1.1 [190 kB] Get:111 http://ftpmaster.internal/ubuntu jammy-security/main armhf e2fsprogs armhf 1.46.5-2ubuntu1.1 [566 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main armhf init armhf 1.62 [5412 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main armhf libattr1 armhf 1:2.5.1-1build1 [12.1 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main armhf libcap2 armhf 1:2.44-1build3 [15.3 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main armhf libpam-runtime all 1.4.0-11ubuntu2 [40.3 kB] Get:116 http://ftpmaster.internal/ubuntu jammy-security/main armhf libpcre3 armhf 2:8.39-13ubuntu0.22.04.1 [225 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main armhf libsmartcols1 armhf 2.37.2-4ubuntu3 [93.9 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main armhf libprocps8 armhf 2:3.3.17-6ubuntu2 [32.7 kB] Get:119 http://ftpmaster.internal/ubuntu jammy-security/main armhf libss2 armhf 1.46.5-2ubuntu1.1 [10.1 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main armhf mawk armhf 1.3.4.20200120-3 [91.5 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main armhf procps armhf 2:3.3.17-6ubuntu2 [372 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main armhf sensible-utils all 0.0.17 [20.1 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main armhf usrmerge all 25ubuntu2 [54.7 kB] Get:124 http://ftpmaster.internal/ubuntu jammy-security/main armhf openssl armhf 3.0.2-0ubuntu1.6 [1152 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main armhf ca-certificates all 20211016 [148 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main armhf readline-common all 8.1.2-1 [53.5 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline8 armhf 8.1.2-1 [128 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main armhf libsqlite3-0 armhf 3.37.2-2 [549 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main armhf tzdata all 2022a-0ubuntu1 [342 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main armhf libpng16-16 armhf 1.6.37-3build5 [170 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main armhf xz-utils armhf 5.2.5-2ubuntu1 [84.6 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main armhf advancecomp armhf 2.1-2.1ubuntu2 [185 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main armhf libctf0 armhf 2.38-3ubuntu1 [93.6 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main armhf libctf-nobfd0 armhf 2.38-3ubuntu1 [93.5 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-arm-linux-gnueabihf armhf 2.38-3ubuntu1 [3061 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main armhf libbinutils armhf 2.38-3ubuntu1 [497 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main armhf binutils armhf 2.38-3ubuntu1 [3162 B] Get:138 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-common armhf 2.38-3ubuntu1 [221 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main armhf make armhf 4.3-4.1build1 [163 kB] Get:140 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Setting up optipng (0.7.7-2build1) ... Setting up lockfile-progs (0.1.19build1) ... Setting up libgdbm-compat4:armhf (1.23-1) ... Setting up procps (2:3.3.17-6ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.d/README.sysctl ... Setting up gpgconf (2.2.27-3ubuntu2.1) ... Setting up libc6-dev:armhf (2.35-0ubuntu3.1) ... Setting up binutils-arm-linux-gnueabihf (2.38-3ubuntu1) ... Setting up gpg (2.2.27-3ubuntu2.1) ... Setting up libperl5.34:armhf (5.34.0-3ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu2.1) ... Setting up pkgbinarymangler (149) ... Setting up binutils (2.38-3ubuntu1) ... Setting up perl (5.34.0-3ubuntu1) ... Setting up libdpkg-perl (1.21.1ubuntu2.1) ... Setting up libstdc++-11-dev:armhf (11.2.0-19ubuntu1) ... Setting up gcc-11 (11.2.0-19ubuntu1) ... Setting up g++-11 (11.2.0-19ubuntu1) ... Setting up dpkg-dev (1.21.1ubuntu2.1) ... Setting up build-essential (12.9ubuntu3) ... Processing triggers for libc-bin (2.35-0ubuntu3.1) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24303567 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-24303567 --arch=armhf --dist=jammy-proposed --nolog libbio-samtools-perl_1.43-3build2.1.dsc Initiating build PACKAGEBUILD-24303567 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-013.buildd +==============================================================================+ | libbio-samtools-perl 1.43-3build2.1 (armhf) Mon, 22 Aug 2022 10:54:03 +0000 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-3build2.1 Source Version: 1.43-3build2.1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24303567/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-y1tRDH/resolver-Tw0g74' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-samtools-perl_1.43-3build2.1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-y1tRDH/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-y1tRDH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [487 B] Fetched 1852 B in 0s (33.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu70 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu70 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 22.3 MB of archives. After this operation, 74.7 MB of additional disk space will be used. 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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.5-1) ... Setting up bsdextrautils (2.37.2-4ubuntu3) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libmagic-mgc (1:5.41-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.6ubuntu1) ... Setting up libmagic1:armhf (1:5.41-3) ... Setting up gettext-base (0.21-4ubuntu4) ... Setting up libperl-dev:armhf (5.34.0-3ubuntu1) ... Setting up file (1:5.41-3) ... Setting up libmodule-build-perl (0.423100-1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up libsigsegv2:armhf (2.13-1ubuntu3) ... Setting up autopoint (0.21-4ubuntu4) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu9.1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libelf1:armhf (0.186-1build1) ... Setting up libicu70:armhf (70.1-2ubuntu1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:armhf (0.186-1build1) ... Setting up libtool (2.4.6-15build2) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libbam-dev (0.1.19+dfsg-5ubuntu0.1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libxml2:armhf (2.9.13+dfsg-1ubuntu0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.21-4ubuntu4) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up debhelper (13.6ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.38-3ubuntu1 dpkg-dev_1.21.1ubuntu2.1 g++-11_11.2.0-19ubuntu1 gcc-11_11.2.0-19ubuntu1 libc6-dev_2.35-0ubuntu3.1 libstdc++-11-dev_11.2.0-19ubuntu1 libstdc++6_12-20220319-1ubuntu1 linux-libc-dev_5.15.0-47.51 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu2 apt_2.4.7 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-4ubuntu4 autotools-dev_20220109.1 base-files_12ubuntu4.2 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policyrcd-script-zg2_0.1-3 procps_2:3.3.17-6ubuntu2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_249.11-0ubuntu3.4 systemd-sysv_249.11-0ubuntu3.4 systemd-timesyncd_249.11-0ubuntu3.4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu3 xz-utils_5.2.5-2ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu9.1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu9.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-3build2.1 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl:native, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz 4e85fdc1b7ad2ee519a0293012954158b5b89d6c 8472 libbio-samtools-perl_1.43-3build2.1.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz 118908be4981c13a4a2ed7403197d032de13d057c517f7f9ad5a566f263ee8fa 8472 libbio-samtools-perl_1.43-3build2.1.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz 28c52b2a569d902972efd9c72951a605 8472 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Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libbio-samtools-perl_1.43-3build2.1.dsc dpkg-source: info: extracting libbio-samtools-perl in /<> dpkg-source: info: unpacking libbio-samtools-perl_1.43.orig.tar.gz dpkg-source: info: unpacking libbio-samtools-perl_1.43-3build2.1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24303567 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24303567 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24303567 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-3build2.1 dpkg-buildpackage: info: source distribution jammy dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro" Found /usr/include/samtools/bam.h and //lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a /usr/bin/perl Build Building Bio-SamTools arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.34/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.34/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam_sort_core’: lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function ‘bam_sort_core’; did you mean ‘bam_format1_core’? [-Wimplicit-function-declaration] 324 | bam_sort_core(is_by_qname,filename,prefix,max_mem); | ^~~~~~~~~~~~~ | bam_format1_core lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Header_view1’: lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function ‘bam_view1’ [-Wimplicit-function-declaration] 916 | bam_view1(bamh,alignment); | ^~~~~~~~~ ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-Bsymbolic-functions -Wl,-z,relro -L//lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/<>/c_bin' dh_auto_test -a /usr/bin/perl Build test --verbose 1 make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.034000 for linux # Current time local: Mon Aug 22 10:54:37 2022 # Current time GMT: Mon Aug 22 10:54:37 2022 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 2 wallclock secs ( 0.16 usr 0.14 sys + 1.90 cusr 0.38 csys = 2.58 CPU) Result: PASS create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libbio-samtools-perl/ -a /usr/bin/perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/auto/Bio/DB/Sam/Sam.so: Unknown DWARF DW_FORM_0x1f21 84dda8b297a0ff879b7a632b6737a3d798c8303e debugedit: debian/libbio-samtools-perl/usr/bin/bam2bedgraph: Unknown DWARF DW_FORM_0x1f21 4f6fc63776fef9bcc677a312690d38b7ecc73ae3 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libbio-samtools-perl (in debian/libbio-samtools-perl); do_strip: , oemstrip: pkgstriptranslations: processing libbio-samtools-perl-dbgsym (in debian/.debhelper/libbio-samtools-perl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-samtools-perl/DEBIAN/control, package libbio-samtools-perl, directory debian/libbio-samtools-perl pkgstripfiles: processing control file: debian/.debhelper/libbio-samtools-perl/dbgsym-root/DEBIAN/control, package libbio-samtools-perl-dbgsym, directory debian/.debhelper/libbio-samtools-perl/dbgsym-root dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libbio-samtools-perl/libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/libbio-samtools-perl/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-samtools-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-3build2.1_armhf.deb'. Renaming libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.deb to libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.ddeb dpkg-genbuildinfo --build=any -O../libbio-samtools-perl_1.43-3build2.1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbio-samtools-perl_1.43-3build2.1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-22T10:54:51Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build2.1_armhf.changes: -------------------------------------------------- Format: 1.8 Date: Sat, 20 Aug 2022 13:38:25 +0200 Source: libbio-samtools-perl Binary: libbio-samtools-perl Built-For-Profiles: noudeb Architecture: armhf Version: 1.43-3build2.1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Frank Heimes Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Launchpad-Bugs-Fixed: 1983255 Changes: libbio-samtools-perl (1.43-3build2.1) jammy; urgency=medium . * No-change rebuild for the samtools-legacy/libbam-dev update. (LP: #1983255) Checksums-Sha1: 95a3d2bfee00de9c20ae68c76747db8507aee2fd 95594 libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.ddeb dc664abf6fbb54905833dca3b3c478ab000497c9 6138 libbio-samtools-perl_1.43-3build2.1_armhf.buildinfo 747213326bbc03ad9266c99d5f65147a02043f07 182558 libbio-samtools-perl_1.43-3build2.1_armhf.deb Checksums-Sha256: 62ffc9b2ad32b9dfe9bd967879892574a9e13ed8515732f944474decebfd0b90 95594 libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.ddeb 581394580c34b488c792ce9e599153e1fe7d60264a86c4c684a769a8a02a4d8c 6138 libbio-samtools-perl_1.43-3build2.1_armhf.buildinfo c381fe69d28f1787232d758957dc9399f2912d0f3d0ee8cee07fbdfbec7306d2 182558 libbio-samtools-perl_1.43-3build2.1_armhf.deb Files: 720988f236f9d2e1b4ba4a9b00f4656b 95594 debug optional libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.ddeb 4148396d8f80138259dbf26e6caab670 6138 perl optional libbio-samtools-perl_1.43-3build2.1_armhf.buildinfo 893672f8dc4ce88532658bd77ea41a16 182558 perl optional libbio-samtools-perl_1.43-3build2.1_armhf.deb /<>/libbio-samtools-perl_1.43-3build2.1_armhf.changes.new could not be renamed to /<>/libbio-samtools-perl_1.43-3build2.1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: armhf Version: 1.43-3build2.1 Checksums-Md5: 720988f236f9d2e1b4ba4a9b00f4656b 95594 libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.ddeb 893672f8dc4ce88532658bd77ea41a16 182558 libbio-samtools-perl_1.43-3build2.1_armhf.deb Checksums-Sha1: 95a3d2bfee00de9c20ae68c76747db8507aee2fd 95594 libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.ddeb 747213326bbc03ad9266c99d5f65147a02043f07 182558 libbio-samtools-perl_1.43-3build2.1_armhf.deb Checksums-Sha256: 62ffc9b2ad32b9dfe9bd967879892574a9e13ed8515732f944474decebfd0b90 95594 libbio-samtools-perl-dbgsym_1.43-3build2.1_armhf.ddeb c381fe69d28f1787232d758957dc9399f2912d0f3d0ee8cee07fbdfbec7306d2 182558 libbio-samtools-perl_1.43-3build2.1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Mon, 22 Aug 2022 10:54:50 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-4ubuntu4), autotools-dev (= 20220109.1), base-files (= 12ubuntu4.2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38-3ubuntu1), binutils-arm-linux-gnueabihf (= 2.38-3ubuntu1), binutils-common (= 2.38-3ubuntu1), bsdextrautils (= 2.37.2-4ubuntu3), bsdutils (= 1:2.37.2-4ubuntu3), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-19ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3build1), debconf (= 1.5.79ubuntu1), debhelper (= 13.6ubuntu1), debianutils (= 5.5-1ubuntu2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.1ubuntu2.1), dpkg-dev (= 1.21.1ubuntu2.1), dwz (= 0.14-1build2), file (= 1:5.41-3), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-19ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-19ubuntu1), gcc-11-base (= 11.2.0-19ubuntu1), gcc-12-base (= 12-20220319-1ubuntu1), gettext (= 0.21-4ubuntu4), gettext-base (= 0.21-4ubuntu4), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.62), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-19ubuntu1), libatomic1 (= 12-20220319-1ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbam-dev (= 0.1.19+dfsg-5ubuntu0.1), libbinutils (= 2.38-3ubuntu1), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.37.2-4ubuntu3), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3.1), libc-dev-bin (= 2.35-0ubuntu3.1), libc6 (= 2.35-0ubuntu3.1), libc6-dev (= 2.35-0ubuntu3.1), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12-20220319-1ubuntu1), libcom-err2 (= 1.46.5-2ubuntu1.1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-3ubuntu1), libctf0 (= 2.38-3ubuntu1), libdata-stag-perl (= 0.14-2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu3), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.6ubuntu1), libdpkg-perl (= 1.21.1ubuntu2.1), libdw1 (= 0.186-1build1), libelf1 (= 0.186-1build1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-19ubuntu1), libgcc-s1 (= 12-20220319-1ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu3), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 12-20220319-1ubuntu1), libgpg-error0 (= 1.43-3), libgssapi-krb5-2 (= 1.19.2-2), libicu70 (= 70.1-2ubuntu1), libio-string-perl (= 1.08-3.1), libisl23 (= 0.24-2build1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-2ubuntu3), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2ubuntu1), libmagic-mgc (= 1:5.41-3), libmagic1 (= 1:5.41-3), libmodule-build-perl (= 0.423100-1), libmount1 (= 2.37.2-4ubuntu3), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.4.0-11ubuntu2), libpam-modules-bin (= 1.4.0-11ubuntu2), libpam-runtime (= 1.4.0-11ubuntu2), libpam0g (= 1.4.0-11ubuntu2), libpcre2-8-0 (= 10.39-3build1), libpcre3 (= 2:8.39-13ubuntu0.22.04.1), libperl-dev (= 5.34.0-3ubuntu1), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.5-1), libseccomp2 (= 2.5.3-2ubuntu2), libselinux1 (= 3.3-1build2), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.37.2-4ubuntu3), libssl3 (= 3.0.2-0ubuntu1.6), libstdc++-11-dev (= 11.2.0-19ubuntu1), libstdc++6 (= 12-20220319-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.11-0ubuntu3.4), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2ubuntu0.1), libtirpc-dev (= 1.3.2-2ubuntu0.1), libtirpc3 (= 1.3.2-2ubuntu0.1), libtool (= 2.4.6-15build2), libubsan1 (= 12-20220319-1ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu3.4), libunistring2 (= 1.0-1), libuuid1 (= 2.37.2-4ubuntu3), libxml2 (= 2.9.13+dfsg-1ubuntu0.1), libzstd1 (= 1.4.8+dfsg-3build1), linux-libc-dev (= 5.15.0-47.51), login (= 1:4.8.1-2ubuntu2), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 24), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.37.2-4ubuntu3), xz-utils (= 5.2.5-2ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9.1), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9.1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1660995505" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build2.1_armhf.deb --------------------------------------------- new Debian package, version 2.0. size 182558 bytes: control archive=1690 bytes. 1058 bytes, 20 lines control 2493 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-3build2.1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 452 Depends: perl, perlapi-5.34.0, libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2022-08-20 11:38 ./ drwxr-xr-x root/root 0 2022-08-20 11:38 ./usr/ drwxr-xr-x root/root 0 2022-08-20 11:38 ./usr/bin/ -rwxr-xr-x root/root 76368 2022-08-20 11:38 ./usr/bin/bam2bedgraph -rwxr-xr-x root/root 2087 2022-08-20 11:38 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2022-08-20 11:38 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2022-08-20 11:38 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2022-08-20 11:38 ./usr/lib/ drwxr-xr-x root/root 0 2022-08-20 11:38 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2022-08-20 11:38 ./usr/lib/arm-linux-gnueabihf/perl5/ drwxr-xr-x root/root 0 2022-08-20 11:38 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/ drwxr-xr-x root/root 0 2022-08-20 11:38 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/ drwxr-xr-x root/root 0 2022-08-20 11:38 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Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 3212 Build-Time: 26 Distribution: jammy-proposed Host Architecture: armhf Install-Time: 19 Job: libbio-samtools-perl_1.43-3build2.1.dsc Machine Architecture: arm64 Package: libbio-samtools-perl Package-Time: 48 Source-Version: 1.43-3build2.1 Space: 3212 Status: successful Version: 1.43-3build2.1 -------------------------------------------------------------------------------- Finished at 2022-08-22T10:54:51Z Build needed 00:00:48, 3212k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-24303567 Scanning for processes to kill in build PACKAGEBUILD-24303567