https://launchpad.net/ubuntu/+source/libbio-samtools-perl/1.43-3build4/+build/24271168 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-118 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:23:37 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_218~581~ubuntu20.04.1 python3-lpbuildd_218~581~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 12 Aug 09:34:44 ntpdate[1824]: adjust time server 10.131.248.1 offset 0.000061 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24271168 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24271168 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24271168 Starting target for build PACKAGEBUILD-24271168 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24271168 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24271168 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24271168 Updating target for build PACKAGEBUILD-24271168 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1407 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5786 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 Packages [199 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [51.6 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe amd64 Packages [480 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [221 kB] Fetched 23.7 MB in 2s (11.5 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-12 g++-12 gcc-12 libasan8 libfdisk1 libgcc-12-dev libgprofng0 libstdc++-12-dev libtsan2 sgml-base util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp cpp-11 dash debianutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-11 gcc gcc-11 gcc-11-base gcc-12-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libnettle8 libperl5.34 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.34 pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils zlib1g 117 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 315 MB of archives. After this operation, 706 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcrypt-dev amd64 1:4.4.28-2 [112 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libc6-dev amd64 2.36-0ubuntu1 [2081 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libc-dev-bin amd64 2.36-0ubuntu1 [19.9 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcrypt1 amd64 1:4.4.28-2 [80.0 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 linux-libc-dev amd64 5.19.0-15.15 [1294 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtirpc-common all 1.3.3+ds-1 [7790 B] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libk5crypto3 amd64 1.20-1 [81.2 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgssapi-krb5-2 amd64 1.20-1 [142 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkrb5-3 amd64 1.20-1 [346 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkrb5support0 amd64 1.20-1 [31.2 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl3 amd64 3.0.4-1ubuntu1 [1898 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [193 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtirpc3 amd64 1.3.3+ds-1 [80.9 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libc6 amd64 2.36-0ubuntu1 [3132 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libc-bin amd64 2.36-0ubuntu1 [667 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libatomic1 amd64 12.1.0-8ubuntu1 [10.4 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libubsan1 amd64 12.1.0-8ubuntu1 [969 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libquadmath0 amd64 12.1.0-8ubuntu1 [152 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 liblsan0 amd64 12.1.0-8ubuntu1 [1060 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libitm1 amd64 12.1.0-8ubuntu1 [29.4 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgomp1 amd64 12.1.0-8ubuntu1 [125 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 gcc-12-base amd64 12.1.0-8ubuntu1 [19.5 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgcc-s1 amd64 12.1.0-8ubuntu1 [54.2 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libcc1-0 amd64 12.1.0-8ubuntu1 [46.4 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libstdc++6 amd64 12.1.0-8ubuntu1 [679 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu2 [73.2 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 debianutils amd64 5.7-0.3 [103 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfdisk1 amd64 2.38-4ubuntu1 [144 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 251.2-2ubuntu2 [11.2 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-3ubuntu1 [37.9 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcryptsetup12 amd64 2:2.5.0-1ubuntu1 [220 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 251.2-2ubuntu2 [4742 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 251.2-2ubuntu2 [326 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 251.2-2ubuntu2 [81.3 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu10 [57.5 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.2 [903 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.9ubuntu1 [1334 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libperl5.34 amd64 5.34.0-5ubuntu1 [4691 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 perl amd64 5.34.0-5ubuntu1 [231 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 perl-base amd64 5.34.0-5ubuntu1 [1739 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 perl-modules-5.34 all 5.34.0-5ubuntu1 [2952 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.10 [721 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.64 [38.7 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libnettle8 amd64 3.8.1-2 [172 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libhogweed6 amd64 3.8.1-2 [199 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 sgml-base all 1.30 [12.5 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 libidn2-0 amd64 2.3.3-1 [62.9 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.7-2ubuntu1 [981 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpgv amd64 2.2.27-3ubuntu3 [135 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.2 [1377 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.64 [5536 B] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.8.3-1 [15.7 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.39.2-1 [654 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main amd64 openssl amd64 3.0.4-1ubuntu1 [1176 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libctf0 amd64 2.39-1ubuntu1 [97.3 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libctf-nobfd0 amd64 2.39-1ubuntu1 [99.7 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgprofng0 amd64 2.39-1ubuntu1 [898 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libbinutils amd64 2.39-1ubuntu1 [608 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 binutils amd64 2.39-1ubuntu1 [3292 B] Get:97 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 binutils-common amd64 2.39-1ubuntu1 [224 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.39-1ubuntu1 [2435 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic/main amd64 libisl23 amd64 0.25-1 [740 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 cpp-12 amd64 12.1.0-8ubuntu1 [63.4 MB] Get:101 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libasan8 amd64 12.1.0-8ubuntu1 [2433 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtsan2 amd64 12.1.0-8ubuntu1 [2455 kB] Get:103 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgcc-12-dev amd64 12.1.0-8ubuntu1 [2577 kB] Get:104 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 gcc-12 amd64 12.1.0-8ubuntu1 [72.6 MB] Get:105 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libstdc++-12-dev amd64 12.1.0-8ubuntu1 [2159 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 g++-12 amd64 12.1.0-8ubuntu1 [68.5 MB] Get:107 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 g++ amd64 4:12.1.0-3ubuntu1 [1414 B] Get:108 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 gcc amd64 4:12.1.0-3ubuntu1 [5112 B] Get:109 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 cpp amd64 4:12.1.0-3ubuntu1 [27.4 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-5ubuntu1 [11.3 MB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-5ubuntu1 [2079 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-5ubuntu1 [2264 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-5ubuntu1 [20.0 MB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-5ubuntu1 [2486 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-5ubuntu1 [2240 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-5ubuntu1 [9911 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-5ubuntu1 [20.4 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.9ubuntu1 [1070 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.9ubuntu1 [237 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 32 [12.2 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:123 http://ftpmaster.internal/ubuntu kinetic/main amd64 libassuan0 amd64 2.5.5-4 [37.2 kB] Get:124 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-2ubuntu1 [34.5 kB] Get:125 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpg amd64 2.2.27-3ubuntu3 [512 kB] Get:126 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpgconf amd64 2.2.27-3ubuntu3 [91.7 kB] Get:127 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpg-agent amd64 2.2.27-3ubuntu3 [205 kB] Get:128 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 315 MB in 2s (156 MB/s) (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.28-2_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.28-2) over (1:4.4.27-1) ... Preparing to unpack .../libc6-dev_2.36-0ubuntu1_amd64.deb ... Unpacking libc6-dev:amd64 (2.36-0ubuntu1) over (2.35-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.36-0ubuntu1_amd64.deb ... Unpacking libc-dev-bin (2.36-0ubuntu1) over (2.35-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.28-2_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.28-2) over (1:4.4.27-1) ... Setting up libcrypt1:amd64 (1:4.4.28-2) ... (Reading database ... 13455 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.19.0-15.15_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.19.0-15.15) over (5.15.0-27.28) ... Preparing to unpack .../01-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) over (1.3.2-2build1) ... Preparing to unpack .../02-libk5crypto3_1.20-1_amd64.deb ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24271168 amd64 kinetic-proposed -c chroot:build-PACKAGEBUILD-24271168 --arch=amd64 --dist=kinetic-proposed --nolog -A libbio-samtools-perl_1.43-3build4.dsc Initiating build PACKAGEBUILD-24271168 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:23:37 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-118.buildd +==============================================================================+ | libbio-samtools-perl 1.43-3build4 (amd64) Fri, 12 Aug 2022 09:35:09 +0000 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-3build4 Source Version: 1.43-3build4 Distribution: kinetic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24271168/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-Yy5Ysw/resolver-ys0yDj' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-samtools-perl_1.43-3build4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-Yy5Ysw/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-Yy5Ysw' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [489 B] Fetched 1854 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 23.1 MB of archives. After this operation, 82.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [704 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libelf1 amd64 0.187-1 [51.3 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu71 amd64 71.1-3 [10.6 MB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2 amd64 2.9.14+dfsg-1 [756 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 file amd64 1:5.41-4 [21.5 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext-base amd64 0.21-6 [37.9 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 autopoint all 0.21-6 [421 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdebhelper-perl all 13.8ubuntu1 [66.8 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtool all 2.4.7-4 [166 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-override-perl all 0.09-3 [9756 B] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdw1 amd64 0.187-1 [247 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 dwz amd64 0.14-1build2 [105 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext amd64 0.21-6 [862 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 debhelper all 13.8ubuntu1 [938 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu10 [162 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libbam-dev amd64 0.1.19+dfsg-5ubuntu1 [118 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libio-string-perl all 1.08-3.1 [10.7 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdata-stag-perl all 0.14-3 [372 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libbio-perl-perl all 1.7.8-1 [2580 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmodule-build-perl all 0.423100-1 [200 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 libperl-dev amd64 5.34.0-5ubuntu1 [1118 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.1 MB in 0s (135 MB/s) Selecting previously unselected package libelf1:amd64. (Reading database ... 14703 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.187-1_amd64.deb ... Unpacking libelf1:amd64 (0.187-1) ... Selecting previously unselected package libicu71:amd64. Preparing to unpack .../01-libicu71_71.1-3_amd64.deb ... Unpacking libicu71:amd64 (71.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38-4ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../05-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... 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Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbam-dev (0.1.19+dfsg-5ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.8ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:23:37 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.39-1ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-8ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-12_12.1.0-8ubuntu1 libc6-dev_2.36-0ubuntu1 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-8ubuntu1 libstdc++6_12.1.0-8ubuntu1 linux-libc-dev_5.19.0-15.15 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.39-1ubuntu1 binutils-common_2.39-1ubuntu1 binutils-x86-64-linux-gnu_2.39-1ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:12.1.0-3ubuntu1 cpp-11_11.3.0-5ubuntu1 cpp-12_12.1.0-8ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.8ubuntu1 debianutils_5.7-0.3 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:12.1.0-3ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-8ubuntu1 gcc_4:12.1.0-3ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-11-base_11.3.0-5ubuntu1 gcc-12_12.1.0-8ubuntu1 gcc-12-base_12.1.0-8ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu3 gpg-agent_2.2.27-3ubuntu3 gpgconf_2.2.27-3ubuntu3 gpgv_2.2.27-3ubuntu3 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 init_1.64 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.4-3ubuntu1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-5ubuntu1 libasan8_12.1.0-8ubuntu1 libassuan0_2.5.5-4 libatomic1_12.1.0-8ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbam-dev_0.1.19+dfsg-5ubuntu1 libbinutils_2.39-1ubuntu1 libbio-perl-perl_1.7.8-1 libblkid1_2.38-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu1 libc-dev-bin_2.36-0ubuntu1 libc6_2.36-0ubuntu1 libc6-dev_2.36-0ubuntu1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1build3 libcc1-0_12.1.0-8ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-1ubuntu1 libctf-nobfd0_2.39-1ubuntu1 libctf0_2.39-1ubuntu1 libdata-stag-perl_0.14-3 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.8ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.9ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-5ubuntu1 libgcc-12-dev_12.1.0-8ubuntu1 libgcc-s1_12.1.0-8ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.7-2ubuntu1 libgomp1_12.1.0-8ubuntu1 libgpg-error0_1.45-2 libgprofng0_2.39-1ubuntu1 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-string-perl_1.08-3.1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.25-1 libitm1_12.1.0-8ubuntu1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.1.0-8ubuntu1 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmodule-build-perl_0.423100-1 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl-dev_5.34.0-5ubuntu1 libperl5.34_5.34.0-5ubuntu1 libpipeline1_1.5.6-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libquadmath0_12.1.0-8ubuntu1 libreadline8_8.1.2-1.2 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2ubuntu2 libssl3_3.0.4-1ubuntu1 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-8ubuntu1 libstdc++6_12.1.0-8ubuntu1 libsub-override-perl_0.09-3 libsystemd0_251.2-2ubuntu2 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-5ubuntu1 libtsan2_12.1.0-8ubuntu1 libubsan1_12.1.0-8ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.2-2ubuntu2 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-15.15 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_32 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.4-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-5ubuntu1 perl-base_5.34.0-5ubuntu1 perl-modules-5.34_5.34.0-5ubuntu1 pinentry-curses_1.2.0-2ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.2-2ubuntu2 systemd-sysv_251.2-2ubuntu2 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu10 zlib1g-dev_1:1.2.11.dfsg-2ubuntu10 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-3build4 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl:native, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz 0761d2ab5dcc58d11719e1d34915110de88f38fb 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz ba59a2e5ce0c432ca80eafd9a26598214d89935339795e601983ee19a0e53042 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz 6258bc88cc924665c75d97dbad942b08 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQGzBAEBCgAdFiEELia6gbrGuCtTbip9+b5w1tgxniEFAmL2Hl0ACgkQ+b5w1tgx niFR1wv+NcOY1rkHhdBrZhHgaKqSKOi53IQuwq2WJ7ZIqW5LH6QhrqYs7dxaeve5 Fgt2suvsQWqVi5vRiMfDHWTp8Bm36lCvJeqsalC59G9kKay5JGPmVaY8X61DkOIV EEAaTkg6tK39NEDrq53Ix89rkMiAqvZVQVr7X1gT3Ll+yPgpEVFXIIGkJMnuVVZX OSKn+bnJZOsZCL0QBaLF5twILLEvbOZRBeZS5m9ts+GHHkKA5HPhQmlkQXygaPkT YLnZZ0wX9Caw6OkX/a+P5/tUcMIAncTuXWqifXBJMBfYex60eKttFl0Ag6bx2xX6 QUlSyKAuT67y5vF+7cl7dYOdv3RytWnMaOmNHSBKsBuh/2Ty+rp4A7n/FNqqthLy ev1f46xWAFmgN7r7EErzuxpSMm2/xSsuVq0gKzeL3V/3pQMy2TCq4NTHWAifSu0h UPtfvt6kbkc8tDb6J4LG7Mu8RywIhIJxsYgRsL9tUCGvn1+C/ZJz9AEA6gvE1it7 Pk5WT6ld =XVDY -----END PGP SIGNATURE----- gpgv: Signature made Fri Aug 12 09:33:17 2022 UTC gpgv: using RSA key 2E26BA81BAC6B82B536E2A7DF9BE70D6D8319E21 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libbio-samtools-perl_1.43-3build4.dsc dpkg-source: info: extracting libbio-samtools-perl in /<> dpkg-source: info: unpacking libbio-samtools-perl_1.43.orig.tar.gz dpkg-source: info: unpacking libbio-samtools-perl_1.43-3build4.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24271168 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24271168 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24271168 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-3build4 dpkg-buildpackage: info: source distribution kinetic dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro" Found /usr/include/samtools/bam.h and //lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build /usr/bin/perl Build Building Bio-SamTools x86_64-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c x86_64-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam_sort_core’: lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function ‘bam_sort_core’; did you mean ‘bam_format1_core’? [-Wimplicit-function-declaration] 324 | bam_sort_core(is_by_qname,filename,prefix,max_mem); | ^~~~~~~~~~~~~ | bam_format1_core lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Header_view1’: lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function ‘bam_view1’ [-Wimplicit-function-declaration] 916 | bam_view1(bamh,alignment); | ^~~~~~~~~ ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -L//lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/<>/c_bin' dh_auto_test /usr/bin/perl Build test --verbose 1 make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.034000 for linux # Current time local: Fri Aug 12 09:35:17 2022 # Current time GMT: Fri Aug 12 09:35:17 2022 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.47 cusr 0.03 csys = 0.52 CPU) Result: PASS create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-samtools-perl/ /usr/bin/perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debugedit: debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/DB/Sam/Sam.so: Unknown DWARF DW_FORM_0x1f20 45ee3d2a9ac2a2a3b6c6cc7e00cb6f4ecfbb33ad debugedit: debian/libbio-samtools-perl/usr/bin/bam2bedgraph: Unknown DWARF DW_FORM_0x1f21 bc69bb889a61e7fad69929bc682bf09c21ea873a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libbio-samtools-perl (in debian/libbio-samtools-perl); do_strip: , oemstrip: pkgstriptranslations: processing libbio-samtools-perl-dbgsym (in debian/.debhelper/libbio-samtools-perl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-samtools-perl/DEBIAN/control, package libbio-samtools-perl, directory debian/libbio-samtools-perl pkgstripfiles: Truncating usr/share/doc/libbio-samtools-perl/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-samtools-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-3build4_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/libbio-samtools-perl/dbgsym-root/DEBIAN/control, package libbio-samtools-perl-dbgsym, directory debian/.debhelper/libbio-samtools-perl/dbgsym-root dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libbio-samtools-perl/libbio-samtools-perl-dbgsym_1.43-3build4_amd64.deb'. Renaming libbio-samtools-perl-dbgsym_1.43-3build4_amd64.deb to libbio-samtools-perl-dbgsym_1.43-3build4_amd64.ddeb dpkg-genbuildinfo --build=binary -O../libbio-samtools-perl_1.43-3build4_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../libbio-samtools-perl_1.43-3build4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-12T09:35:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build4_amd64.changes: ------------------------------------------------ Format: 1.8 Date: Fri, 12 Aug 2022 11:33:17 +0200 Source: libbio-samtools-perl Binary: libbio-samtools-perl Built-For-Profiles: noudeb Architecture: amd64 Version: 1.43-3build4 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Olivier Gayot Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Launchpad-Bugs-Fixed: 1983255 Changes: libbio-samtools-perl (1.43-3build4) kinetic; urgency=medium . * No-change rebuild against samtools-legacy (LP: #1983255) Checksums-Sha1: 0b3dc59cafb8954329a914525d705638a6935777 98690 libbio-samtools-perl-dbgsym_1.43-3build4_amd64.ddeb 1efcc0ad1774668109c8edd0a9d1d51742096871 6271 libbio-samtools-perl_1.43-3build4_amd64.buildinfo cd517574b373ecbe5b72ab603bd294c49326ea17 195416 libbio-samtools-perl_1.43-3build4_amd64.deb Checksums-Sha256: a7661d382bd8e9232434e1deb3952bce6078f9e691520c1864f4a38b4994641e 98690 libbio-samtools-perl-dbgsym_1.43-3build4_amd64.ddeb 6c029688fc1e9579f225559f5742943722412e96172499267b72708863b530b1 6271 libbio-samtools-perl_1.43-3build4_amd64.buildinfo 68b649feaefbeded74ed26637d23ce5767678a6ccc0681c416707e4f9654a9be 195416 libbio-samtools-perl_1.43-3build4_amd64.deb Files: 66a52069a320571b38f9449a72bc5d5d 98690 debug optional libbio-samtools-perl-dbgsym_1.43-3build4_amd64.ddeb 75063ec19456f6a6a1687ed33b1a3cc7 6271 perl optional libbio-samtools-perl_1.43-3build4_amd64.buildinfo ada8de25956c3587a4af4a29e5b8e50d 195416 perl optional libbio-samtools-perl_1.43-3build4_amd64.deb /<>/libbio-samtools-perl_1.43-3build4_amd64.changes.new could not be renamed to /<>/libbio-samtools-perl_1.43-3build4_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: amd64 Version: 1.43-3build4 Checksums-Md5: 66a52069a320571b38f9449a72bc5d5d 98690 libbio-samtools-perl-dbgsym_1.43-3build4_amd64.ddeb ada8de25956c3587a4af4a29e5b8e50d 195416 libbio-samtools-perl_1.43-3build4_amd64.deb Checksums-Sha1: 0b3dc59cafb8954329a914525d705638a6935777 98690 libbio-samtools-perl-dbgsym_1.43-3build4_amd64.ddeb cd517574b373ecbe5b72ab603bd294c49326ea17 195416 libbio-samtools-perl_1.43-3build4_amd64.deb Checksums-Sha256: a7661d382bd8e9232434e1deb3952bce6078f9e691520c1864f4a38b4994641e 98690 libbio-samtools-perl-dbgsym_1.43-3build4_amd64.ddeb 68b649feaefbeded74ed26637d23ce5767678a6ccc0681c416707e4f9654a9be 195416 libbio-samtools-perl_1.43-3build4_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Fri, 12 Aug 2022 09:35:20 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.39-1ubuntu1), binutils-common (= 2.39-1ubuntu1), binutils-x86-64-linux-gnu (= 2.39-1ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.1.0-3ubuntu1), cpp-11 (= 11.3.0-5ubuntu1), cpp-12 (= 12.1.0-8ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.8ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:12.1.0-3ubuntu1), g++-12 (= 12.1.0-8ubuntu1), gcc (= 4:12.1.0-3ubuntu1), gcc-11 (= 11.3.0-5ubuntu1), gcc-11-base (= 11.3.0-5ubuntu1), gcc-12 (= 12.1.0-8ubuntu1), gcc-12-base (= 12.1.0-8ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-5ubuntu1), libasan8 (= 12.1.0-8ubuntu1), libatomic1 (= 12.1.0-8ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbam-dev (= 0.1.19+dfsg-5ubuntu1), libbinutils (= 2.39-1ubuntu1), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu1), libc-dev-bin (= 2.36-0ubuntu1), libc6 (= 2.36-0ubuntu1), libc6-dev (= 2.36-0ubuntu1), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-8ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.39-1ubuntu1), libctf0 (= 2.39-1ubuntu1), libdata-stag-perl (= 0.14-3), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.8ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5ubuntu1), libgcc-12-dev (= 12.1.0-8ubuntu1), libgcc-s1 (= 12.1.0-8ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 12.1.0-8ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.39-1ubuntu1), libgssapi-krb5-2 (= 1.20-1), libicu71 (= 71.1-3), libio-string-perl (= 1.08-3.1), libisl23 (= 0.25-1), libitm1 (= 12.1.0-8ubuntu1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblsan0 (= 12.1.0-8ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmodule-build-perl (= 0.423100-1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl-dev (= 5.34.0-5ubuntu1), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-1), libquadmath0 (= 12.1.0-8ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libssl3 (= 3.0.4-1ubuntu1), libstdc++-12-dev (= 12.1.0-8ubuntu1), libstdc++6 (= 12.1.0-8ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.2-2ubuntu2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5ubuntu1), libtsan2 (= 12.1.0-8ubuntu1), libubsan1 (= 12.1.0-8ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.2-2ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-15.15), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 32), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu10), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu10) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1660296797" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build4_amd64.deb ------------------------------------------- new Debian package, version 2.0. size 195416 bytes: control archive=1694 bytes. 1077 bytes, 20 lines control 2451 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-3build4 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 602 Depends: perl (>= 5.34.0-5ubuntu1), perlapi-5.34.0, libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 4312 Build-Time: 7 Distribution: kinetic-proposed Host Architecture: amd64 Install-Time: 4 Job: libbio-samtools-perl_1.43-3build4.dsc Machine Architecture: amd64 Package: libbio-samtools-perl Package-Time: 11 Source-Version: 1.43-3build4 Space: 4312 Status: successful Version: 1.43-3build4 -------------------------------------------------------------------------------- Finished at 2022-08-12T09:35:20Z Build needed 00:00:11, 4312k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24271168 Scanning for processes to kill in build PACKAGEBUILD-24271168