https://launchpad.net/ubuntu/+source/libbio-samtools-perl/1.43-3build4/+build/24271170 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-016 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_218~581~ubuntu20.04.1 python3-lpbuildd_218~581~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 12 Aug 09:38:53 ntpdate[1809]: adjust time server 10.211.37.1 offset 0.006431 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24271170 --image-type chroot /home/buildd/filecache-default/e7574466887b0df41a9ed814007609e88584b937 Creating target for build PACKAGEBUILD-24271170 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24271170 Starting target for build PACKAGEBUILD-24271170 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24271170 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24271170 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24271170 Updating target for build PACKAGEBUILD-24271170 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf Packages [1334 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe armhf Packages [13.4 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5786 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf Packages [138 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [51.6 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe armhf Packages [414 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [221 kB] Fetched 22.4 MB in 9s (2392 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-12 g++-12 gcc-12 libasan8 libfdisk1 libgcc-12-dev libstdc++-12-dev sgml-base util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils cpp cpp-11 dash debianutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-11 gcc gcc-11 gcc-11-base gcc-12-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzma5 libmount1 libncurses6 libncursesw6 libnettle8 libperl5.34 libpng16-16 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.34 pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils zlib1g 113 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 269 MB of archives. After this operation, 565 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main armhf libcrypt-dev armhf 1:4.4.28-2 [122 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libc6-dev armhf 2.36-0ubuntu1 [1333 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libc-dev-bin armhf 2.36-0ubuntu1 [18.6 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main armhf libcrypt1 armhf 1:4.4.28-2 [92.4 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf linux-libc-dev armhf 5.19.0-15.15 [1256 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libtirpc-common all 1.3.3+ds-1 [7790 B] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libk5crypto3 armhf 1.20-1 [78.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main armhf libgssapi-krb5-2 armhf 1.20-1 [118 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main armhf libkrb5-3 armhf 1.20-1 [320 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main armhf libkrb5support0 armhf 1.20-1 [29.5 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main armhf libcom-err2 armhf 1.46.5-2ubuntu2 [8210 B] Get:12 http://ftpmaster.internal/ubuntu kinetic/main armhf libkeyutils1 armhf 1.6.1-3ubuntu1 [8722 B] Get:13 http://ftpmaster.internal/ubuntu kinetic/main armhf libssl3 armhf 3.0.4-1ubuntu1 [1569 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libtirpc-dev armhf 1.3.3+ds-1 [183 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libtirpc3 armhf 1.3.3+ds-1 [71.4 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libc6 armhf 2.36-0ubuntu1 [2499 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libc-bin armhf 2.36-0ubuntu1 [532 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libatomic1 armhf 12.1.0-8ubuntu1 [7656 B] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libubsan1 armhf 12.1.0-8ubuntu1 [950 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgomp1 armhf 12.1.0-8ubuntu1 [109 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf gcc-12-base armhf 12.1.0-8ubuntu1 [19.5 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgcc-s1 armhf 12.1.0-8ubuntu1 [41.3 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libcc1-0 armhf 12.1.0-8ubuntu1 [38.9 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libstdc++6 armhf 12.1.0-8ubuntu1 [602 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main armhf base-files armhf 12.2ubuntu2 [73.1 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main armhf bsdutils armhf 1:2.38-4ubuntu1 [86.3 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main armhf debianutils armhf 5.7-0.3 [102 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main armhf libzstd1 armhf 1.5.2+dfsg-1 [243 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main armhf libgpg-error0 armhf 1.45-2 [61.2 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcrypt20 armhf 1.10.1-2ubuntu1 [450 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main armhf liblzma5 armhf 5.2.5-2.1 [86.4 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main armhf libblkid1 armhf 2.38-4ubuntu1 [137 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main armhf libuuid1 armhf 2.38-4ubuntu1 [22.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main armhf libfdisk1 armhf 2.38-4ubuntu1 [186 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main armhf systemd-sysv armhf 251.2-2ubuntu2 [11.2 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main armhf libapparmor1 armhf 3.0.4-3ubuntu1 [32.8 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main armhf libcryptsetup12 armhf 2:2.5.0-1ubuntu1 [194 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main armhf libip4tc2 armhf 1.8.7-1ubuntu6 [17.5 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main armhf libselinux1 armhf 3.4-1 [69.3 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main armhf libmount1 armhf 2.38-4ubuntu1 [153 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main armhf mount armhf 2.38-4ubuntu1 [126 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main armhf libsemanage-common all 3.4-1 [9828 B] Get:43 http://ftpmaster.internal/ubuntu kinetic/main armhf libsepol2 armhf 3.4-2 [263 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main armhf libsemanage2 armhf 3.4-1 [84.8 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main armhf passwd armhf 1:4.11.1+dfsg1-2ubuntu1 [743 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main armhf adduser all 3.121ubuntu1 [150 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main armhf systemd armhf 251.2-2ubuntu2 [4620 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main armhf libsystemd0 armhf 251.2-2ubuntu2 [307 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main armhf libudev1 armhf 251.2-2ubuntu2 [74.4 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf zlib1g armhf 1:1.2.11.dfsg-2ubuntu10 [51.2 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main armhf libapt-pkg6.0 armhf 2.5.2 [910 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main armhf dpkg armhf 1.21.9ubuntu1 [1291 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [79.6 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main armhf login armhf 1:4.11.1+dfsg1-2ubuntu1 [182 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main armhf ncurses-bin armhf 6.3+20220423-2 [174 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main armhf libperl5.34 armhf 5.34.0-5ubuntu1 [3963 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main armhf perl armhf 5.34.0-5ubuntu1 [231 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main armhf perl-base armhf 5.34.0-5ubuntu1 [1586 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main armhf perl-modules-5.34 all 5.34.0-5ubuntu1 [2952 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.10 [644 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main armhf libsmartcols1 armhf 2.38-4ubuntu1 [94.9 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main armhf util-linux-extra armhf 2.38-4ubuntu1 [98.7 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main armhf util-linux armhf 2.38-4ubuntu1 [1157 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main armhf init-system-helpers all 1.64 [38.7 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main armhf ncurses-base all 6.3+20220423-2 [21.2 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libnettle8 armhf 3.8.1-2 [177 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libhogweed6 armhf 3.8.1-2 [187 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main armhf sgml-base all 1.30 [12.5 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main armhf libidn2-0 armhf 2.3.3-1 [92.7 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main armhf libgnutls30 armhf 3.7.7-2ubuntu1 [935 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main armhf gpgv armhf 2.2.27-3ubuntu3 [184 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main armhf apt armhf 2.5.2 [1371 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main armhf logsave armhf 1.46.5-2ubuntu2 [9340 B] Get:74 http://ftpmaster.internal/ubuntu kinetic/main armhf libext2fs2 armhf 1.46.5-2ubuntu2 [188 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main armhf e2fsprogs armhf 1.46.5-2ubuntu2 [562 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main armhf init armhf 1.64 [5536 B] Get:77 http://ftpmaster.internal/ubuntu kinetic/main armhf libcap-ng0 armhf 0.8.3-1 [13.8 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main armhf libncurses6 armhf 6.3+20220423-2 [88.3 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main armhf libncursesw6 armhf 6.3+20220423-2 [116 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main armhf libtinfo6 armhf 6.3+20220423-2 [83.6 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main armhf libss2 armhf 1.46.5-2ubuntu2 [10.1 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main armhf mawk armhf 1.3.4.20200120-3.1 [97.1 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main armhf readline-common all 8.1.2-1.2 [53.6 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main armhf libreadline8 armhf 8.1.2-1.2 [128 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main armhf libsqlite3-0 armhf 3.39.2-1 [561 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main armhf openssl armhf 3.0.4-1ubuntu1 [1146 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main armhf libpng16-16 armhf 1.6.37-5 [167 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main armhf xz-utils armhf 5.2.5-2.1 [83.6 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libctf0 armhf 2.39-1ubuntu1 [85.9 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libctf-nobfd0 armhf 2.39-1ubuntu1 [85.1 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libbinutils armhf 2.39-1ubuntu1 [442 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils armhf 2.39-1ubuntu1 [3170 B] Get:93 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils-common armhf 2.39-1ubuntu1 [223 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.39-1ubuntu1 [2775 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main armhf libisl23 armhf 0.25-1 [580 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf cpp-12 armhf 12.1.0-8ubuntu1 [56.7 MB] Get:97 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libasan8 armhf 12.1.0-8ubuntu1 [2382 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgcc-12-dev armhf 12.1.0-8ubuntu1 [857 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf gcc-12 armhf 12.1.0-8ubuntu1 [63.4 MB] Get:100 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libstdc++-12-dev armhf 12.1.0-8ubuntu1 [2237 kB] Get:101 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf g++-12 armhf 12.1.0-8ubuntu1 [61.4 MB] Get:102 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf g++ armhf 4:12.1.0-3ubuntu1 [1400 B] Get:103 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf gcc armhf 4:12.1.0-3ubuntu1 [5126 B] Get:104 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf cpp armhf 4:12.1.0-3ubuntu1 [27.4 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic/main armhf libasan6 armhf 11.3.0-5ubuntu1 [2222 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic/main armhf g++-11 armhf 11.3.0-5ubuntu1 [8981 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-11 armhf 11.3.0-5ubuntu1 [15.7 MB] Get:108 http://ftpmaster.internal/ubuntu kinetic/main armhf libstdc++-11-dev armhf 11.3.0-5ubuntu1 [2127 kB] Get:109 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcc-11-dev armhf 11.3.0-5ubuntu1 [822 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic/main armhf cpp-11 armhf 11.3.0-5ubuntu1 [7797 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-11-base armhf 11.3.0-5ubuntu1 [20.4 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main armhf dpkg-dev all 1.21.9ubuntu1 [1070 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main armhf libdpkg-perl all 1.21.9ubuntu1 [237 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main armhf lto-disabled-list all 32 [12.2 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main armhf libfakeroot armhf 1.29-1ubuntu1 [25.6 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main armhf fakeroot armhf 1.29-1ubuntu1 [61.8 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main armhf libassuan0 armhf 2.5.5-4 [30.4 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main armhf pinentry-curses armhf 1.2.0-2ubuntu1 [36.2 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main armhf gpg armhf 2.2.27-3ubuntu3 [477 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main armhf gpgconf armhf 2.2.27-3ubuntu3 [112 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main armhf gpg-agent armhf 2.2.27-3ubuntu3 [223 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/main armhf policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 269 MB in 15s (18.0 MB/s) (Reading database ... 13176 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.28-2_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.28-2) over (1:4.4.27-1) ... Preparing to unpack .../libc6-dev_2.36-0ubuntu1_armhf.deb ... Unpacking libc6-dev:armhf (2.36-0ubuntu1) over (2.35-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.36-0ubuntu1_armhf.deb ... Unpacking libc-dev-bin (2.36-0ubuntu1) over (2.35-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.28-2_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.28-2) over (1:4.4.27-1) ... Setting up libcrypt1:armhf (1:4.4.28-2) ... (Reading database ... 13182 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.19.0-15.15_armhf.deb ... Unpacking linux-libc-dev:armhf (5.19.0-15.15) over (5.15.0-27.28) ... Preparing to unpack .../01-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) over (1.3.2-2build1) ... Preparing to unpack .../02-libk5crypto3_1.20-1_armhf.deb ... 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Setting up libatomic1:armhf (12.1.0-8ubuntu1) ... Setting up libss2:armhf (1.46.5-2ubuntu2) ... Setting up util-linux (2.38-4ubuntu1) ... Setting up libncursesw6:armhf (6.3+20220423-2) ... Setting up libk5crypto3:armhf (1.20-1) ... Setting up logsave (1.46.5-2ubuntu2) ... Setting up libubsan1:armhf (12.1.0-8ubuntu1) ... Setting up libgcc-11-dev:armhf (11.3.0-5ubuntu1) ... Setting up libcrypt-dev:armhf (1:4.4.28-2) ... Setting up libasan8:armhf (12.1.0-8ubuntu1) ... Setting up mawk (1.3.4.20200120-3.1) ... Setting up libkrb5-3:armhf (1.20-1) ... Setting up libbinutils:armhf (2.39-1ubuntu1) ... Setting up libisl23:armhf (0.25-1) ... Setting up libc-dev-bin (2.36-0ubuntu1) ... Setting up openssl (3.0.4-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1.2) ... Setting up libcc1-0:armhf (12.1.0-8ubuntu1) ... Setting up libctf0:armhf (2.39-1ubuntu1) ... Setting up pinentry-curses (1.2.0-2ubuntu1) ... Setting up cpp-11 (11.3.0-5ubuntu1) ... Setting up libperl5.34:armhf (5.34.0-5ubuntu1) ... Setting up cpp-12 (12.1.0-8ubuntu1) ... Setting up libreadline8:armhf (8.1.2-1.2) ... Setting up e2fsprogs (1.46.5-2ubuntu2) ... Setting up perl (5.34.0-5ubuntu1) ... Setting up libgcc-12-dev:armhf (12.1.0-8ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.20-1) ... Setting up libdpkg-perl (1.21.9ubuntu1) ... Setting up cpp (4:12.1.0-3ubuntu1) ... Setting up gpgconf (2.2.27-3ubuntu3) ... Setting up binutils-arm-linux-gnueabihf (2.39-1ubuntu1) ... Setting up gpg (2.2.27-3ubuntu3) ... Setting up libtirpc3:armhf (1.3.3+ds-1) ... Setting up gpg-agent (2.2.27-3ubuntu3) ... Setting up binutils (2.39-1ubuntu1) ... Setting up dpkg-dev (1.21.9ubuntu1) ... Setting up libtirpc-dev:armhf (1.3.3+ds-1) ... Setting up gcc-12 (12.1.0-8ubuntu1) ... Setting up gcc-11 (11.3.0-5ubuntu1) ... Setting up libc6-dev:armhf (2.36-0ubuntu1) ... Setting up libstdc++-12-dev:armhf (12.1.0-8ubuntu1) ... Setting up gcc (4:12.1.0-3ubuntu1) ... Setting up libstdc++-11-dev:armhf (11.3.0-5ubuntu1) ... Setting up g++-12 (12.1.0-8ubuntu1) ... Setting up g++-11 (11.3.0-5ubuntu1) ... Setting up g++ (4:12.1.0-3ubuntu1) ... Processing triggers for libc-bin (2.36-0ubuntu1) ... Processing triggers for debianutils (5.7-0.3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24271170 armhf kinetic-proposed -c chroot:build-PACKAGEBUILD-24271170 --arch=armhf --dist=kinetic-proposed --nolog libbio-samtools-perl_1.43-3build4.dsc Initiating build PACKAGEBUILD-24271170 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-016.buildd +==============================================================================+ | libbio-samtools-perl 1.43-3build4 (armhf) Fri, 12 Aug 2022 09:41:01 +0000 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-3build4 Source Version: 1.43-3build4 Distribution: kinetic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24271170/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-KWv83K/resolver-n4xSBg' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-samtools-perl_1.43-3build4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-KWv83K/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-KWv83K' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [487 B] Fetched 1852 B in 0s (27.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 22.2 MB of archives. After this operation, 75.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [706 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main armhf libelf1 armhf 0.187-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main armhf libicu71 armhf 71.1-3 [10.3 MB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main armhf libxml2 armhf 2.9.14+dfsg-1 [592 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf bsdextrautils armhf 2.38-4ubuntu1 [76.6 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main armhf libmagic-mgc armhf 1:5.41-4 [257 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libmagic1 armhf 1:5.41-4 [80.1 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main armhf file armhf 1:5.41-4 [20.6 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main armhf gettext-base armhf 0.21-6 [37.8 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main armhf groff-base armhf 1.22.4-8build1 [870 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main armhf libpipeline1 armhf 1.5.6-1 [25.5 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main armhf man-db armhf 2.10.2-1 [1151 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main armhf libsigsegv2 armhf 2.13-1ubuntu3 [13.7 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main armhf m4 armhf 1.4.18-5ubuntu2 [191 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main armhf autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main armhf autopoint all 0.21-6 [421 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main armhf libdebhelper-perl all 13.8ubuntu1 [66.8 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main armhf libtool all 2.4.7-4 [166 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main armhf dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-override-perl all 0.09-3 [9756 B] Get:25 http://ftpmaster.internal/ubuntu kinetic/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main armhf dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:27 http://ftpmaster.internal/ubuntu kinetic/main armhf libdw1 armhf 0.187-1 [223 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main armhf dwz armhf 0.14-1build2 [99.2 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main armhf gettext armhf 0.21-6 [800 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main armhf debhelper all 13.8ubuntu1 [938 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu10 [155 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/universe armhf libbam-dev armhf 0.1.19+dfsg-5ubuntu1 [103 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main armhf libio-string-perl all 1.08-3.1 [10.7 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/universe armhf libdata-stag-perl all 0.14-3 [372 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/universe armhf libbio-perl-perl all 1.7.8-1 [2580 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/universe armhf libmodule-build-perl all 0.423100-1 [200 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main armhf libperl-dev armhf 5.34.0-5ubuntu1 [1026 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.2 MB in 2s (11.1 MB/s) Selecting previously unselected package libelf1:armhf. 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Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.8ubuntu1) ... Setting up libmagic1:armhf (1:5.41-4) ... Setting up gettext-base (0.21-6) ... Setting up libperl-dev:armhf (5.34.0-5ubuntu1) ... Setting up file (1:5.41-4) ... Setting up libmodule-build-perl (0.423100-1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up libsigsegv2:armhf (2.13-1ubuntu3) ... Setting up autopoint (0.21-6) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu10) ... Setting up libdata-stag-perl (0.14-3) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libelf1:armhf (0.187-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:armhf (0.187-1) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbam-dev (0.1.19+dfsg-5ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.8ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.39-1ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-8ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-12_12.1.0-8ubuntu1 libc6-dev_2.36-0ubuntu1 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-8ubuntu1 libstdc++6_12.1.0-8ubuntu1 linux-libc-dev_5.19.0-15.15 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.39-1ubuntu1 binutils-arm-linux-gnueabihf_2.39-1ubuntu1 binutils-common_2.39-1ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:12.1.0-3ubuntu1 cpp-11_11.3.0-5ubuntu1 cpp-12_12.1.0-8ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.8ubuntu1 debianutils_5.7-0.3 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:12.1.0-3ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-8ubuntu1 gcc_4:12.1.0-3ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-11-base_11.3.0-5ubuntu1 gcc-12_12.1.0-8ubuntu1 gcc-12-base_12.1.0-8ubuntu1 gettext_0.21-6 gettext-base_0.21-6 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libdata-stag-perl_0.14-3 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.8ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.9ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-5ubuntu1 libgcc-12-dev_12.1.0-8ubuntu1 libgcc-s1_12.1.0-8ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.7-2ubuntu1 libgomp1_12.1.0-8ubuntu1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-string-perl_1.08-3.1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.25-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmodule-build-perl_0.423100-1 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl-dev_5.34.0-5ubuntu1 libperl5.34_5.34.0-5ubuntu1 libpipeline1_1.5.6-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libreadline8_8.1.2-1.2 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2ubuntu2 libssl3_3.0.4-1ubuntu1 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-8ubuntu1 libstdc++6_12.1.0-8ubuntu1 libsub-override-perl_0.09-3 libsystemd0_251.2-2ubuntu2 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.1.0-8ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.2-2ubuntu2 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-15.15 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_32 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.4-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-5ubuntu1 perl-base_5.34.0-5ubuntu1 perl-modules-5.34_5.34.0-5ubuntu1 pinentry-curses_1.2.0-2ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.2-2ubuntu2 systemd-sysv_251.2-2ubuntu2 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu10 zlib1g-dev_1:1.2.11.dfsg-2ubuntu10 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-3build4 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl:native, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz 0761d2ab5dcc58d11719e1d34915110de88f38fb 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz ba59a2e5ce0c432ca80eafd9a26598214d89935339795e601983ee19a0e53042 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz 6258bc88cc924665c75d97dbad942b08 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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dpkg-source: info: unpacking libbio-samtools-perl_1.43-3build4.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24271170 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24271170 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24271170 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-3build4 dpkg-buildpackage: info: source distribution kinetic dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro" Found /usr/include/samtools/bam.h and //lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a /usr/bin/perl Build Building Bio-SamTools arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.34/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.34/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam_sort_core’: lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function ‘bam_sort_core’; did you mean ‘bam_format1_core’? [-Wimplicit-function-declaration] 324 | bam_sort_core(is_by_qname,filename,prefix,max_mem); | ^~~~~~~~~~~~~ | bam_format1_core lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Header_view1’: lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function ‘bam_view1’ [-Wimplicit-function-declaration] 916 | bam_view1(bamh,alignment); | ^~~~~~~~~ ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-Bsymbolic-functions -Wl,-z,relro -L//lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/<>/c_bin' dh_auto_test -a /usr/bin/perl Build test --verbose 1 make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.034000 for linux # Current time local: Fri Aug 12 09:41:38 2022 # Current time GMT: Fri Aug 12 09:41:38 2022 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 2 wallclock secs ( 0.16 usr 0.10 sys + 1.92 cusr 0.48 csys = 2.66 CPU) Result: PASS create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libbio-samtools-perl/ -a /usr/bin/perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.34/auto/Bio/DB/Sam/Sam.so: Unknown DWARF DW_FORM_0x1f21 3ac7ae46860f715a953f179026a0bd6b30d555bc debugedit: debian/libbio-samtools-perl/usr/bin/bam2bedgraph: Unknown DWARF DW_FORM_0x1f21 d4f60606328e4338696cc998f147fd0995fb47e5 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libbio-samtools-perl (in debian/libbio-samtools-perl); do_strip: , oemstrip: pkgstriptranslations: processing libbio-samtools-perl-dbgsym (in debian/.debhelper/libbio-samtools-perl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-samtools-perl/DEBIAN/control, package libbio-samtools-perl, directory debian/libbio-samtools-perl pkgstripfiles: Truncating usr/share/doc/libbio-samtools-perl/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/libbio-samtools-perl/dbgsym-root/DEBIAN/control, package libbio-samtools-perl-dbgsym, directory debian/.debhelper/libbio-samtools-perl/dbgsym-root dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libbio-samtools-perl/libbio-samtools-perl-dbgsym_1.43-3build4_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-samtools-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-3build4_armhf.deb'. Renaming libbio-samtools-perl-dbgsym_1.43-3build4_armhf.deb to libbio-samtools-perl-dbgsym_1.43-3build4_armhf.ddeb dpkg-genbuildinfo --build=any -O../libbio-samtools-perl_1.43-3build4_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbio-samtools-perl_1.43-3build4_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-12T09:41:56Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build4_armhf.changes: ------------------------------------------------ Format: 1.8 Date: Fri, 12 Aug 2022 11:33:17 +0200 Source: libbio-samtools-perl Binary: libbio-samtools-perl Built-For-Profiles: noudeb Architecture: armhf Version: 1.43-3build4 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Olivier Gayot Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Launchpad-Bugs-Fixed: 1983255 Changes: libbio-samtools-perl (1.43-3build4) kinetic; urgency=medium . * No-change rebuild against samtools-legacy (LP: #1983255) Checksums-Sha1: 21d73495fb5c9d4bc92f0e9fbb971bee82e9cde9 94912 libbio-samtools-perl-dbgsym_1.43-3build4_armhf.ddeb 4230e282ed398036f220551914d04a26c9392130 6084 libbio-samtools-perl_1.43-3build4_armhf.buildinfo 31796a5da96535cbe9bf6416a98d636e5c4061dd 180812 libbio-samtools-perl_1.43-3build4_armhf.deb Checksums-Sha256: c821baebd008fe339653ac29f9b04015125e5b26ea356413a4bf23a8c67d0e41 94912 libbio-samtools-perl-dbgsym_1.43-3build4_armhf.ddeb 1a1da3a4011d19faa3a3f07f1f098f282dd3bea9f9fa958f79e14030505709e7 6084 libbio-samtools-perl_1.43-3build4_armhf.buildinfo 59c1d362e4daf5e22ee13abda224e5f5e8d1ebba60fc8f2af16ab51ebbb10809 180812 libbio-samtools-perl_1.43-3build4_armhf.deb Files: 77c3a832e5580a1e9723b5dc47aefada 94912 debug optional libbio-samtools-perl-dbgsym_1.43-3build4_armhf.ddeb cc65179712016ce34ce210cb8bbef1e3 6084 perl optional libbio-samtools-perl_1.43-3build4_armhf.buildinfo 3ca6baca316befc669133969bcf4b82a 180812 perl optional libbio-samtools-perl_1.43-3build4_armhf.deb /<>/libbio-samtools-perl_1.43-3build4_armhf.changes.new could not be renamed to /<>/libbio-samtools-perl_1.43-3build4_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: armhf Version: 1.43-3build4 Checksums-Md5: 77c3a832e5580a1e9723b5dc47aefada 94912 libbio-samtools-perl-dbgsym_1.43-3build4_armhf.ddeb 3ca6baca316befc669133969bcf4b82a 180812 libbio-samtools-perl_1.43-3build4_armhf.deb Checksums-Sha1: 21d73495fb5c9d4bc92f0e9fbb971bee82e9cde9 94912 libbio-samtools-perl-dbgsym_1.43-3build4_armhf.ddeb 31796a5da96535cbe9bf6416a98d636e5c4061dd 180812 libbio-samtools-perl_1.43-3build4_armhf.deb Checksums-Sha256: c821baebd008fe339653ac29f9b04015125e5b26ea356413a4bf23a8c67d0e41 94912 libbio-samtools-perl-dbgsym_1.43-3build4_armhf.ddeb 59c1d362e4daf5e22ee13abda224e5f5e8d1ebba60fc8f2af16ab51ebbb10809 180812 libbio-samtools-perl_1.43-3build4_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Fri, 12 Aug 2022 09:41:55 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.39-1ubuntu1), binutils-arm-linux-gnueabihf (= 2.39-1ubuntu1), binutils-common (= 2.39-1ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.1.0-3ubuntu1), cpp-11 (= 11.3.0-5ubuntu1), cpp-12 (= 12.1.0-8ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.8ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:12.1.0-3ubuntu1), g++-12 (= 12.1.0-8ubuntu1), gcc (= 4:12.1.0-3ubuntu1), gcc-11 (= 11.3.0-5ubuntu1), gcc-11-base (= 11.3.0-5ubuntu1), gcc-12 (= 12.1.0-8ubuntu1), gcc-12-base (= 12.1.0-8ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-5ubuntu1), libasan8 (= 12.1.0-8ubuntu1), libatomic1 (= 12.1.0-8ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbam-dev (= 0.1.19+dfsg-5ubuntu1), libbinutils (= 2.39-1ubuntu1), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu1), libc-dev-bin (= 2.36-0ubuntu1), libc6 (= 2.36-0ubuntu1), libc6-dev (= 2.36-0ubuntu1), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-8ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.39-1ubuntu1), libctf0 (= 2.39-1ubuntu1), libdata-stag-perl (= 0.14-3), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.8ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5ubuntu1), libgcc-12-dev (= 12.1.0-8ubuntu1), libgcc-s1 (= 12.1.0-8ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 12.1.0-8ubuntu1), libgpg-error0 (= 1.45-2), libgssapi-krb5-2 (= 1.20-1), libicu71 (= 71.1-3), libio-string-perl (= 1.08-3.1), libisl23 (= 0.25-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmodule-build-perl (= 0.423100-1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl-dev (= 5.34.0-5ubuntu1), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libssl3 (= 3.0.4-1ubuntu1), libstdc++-12-dev (= 12.1.0-8ubuntu1), libstdc++6 (= 12.1.0-8ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.2-2ubuntu2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libubsan1 (= 12.1.0-8ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.2-2ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-15.15), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 32), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu10), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu10) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1660296797" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build4_armhf.deb ------------------------------------------- new Debian package, version 2.0. size 180812 bytes: control archive=1697 bytes. 1077 bytes, 20 lines control 2493 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-3build4 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 556 Depends: perl (>= 5.34.0-5ubuntu1), perlapi-5.34.0, libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2022-08-12 09:33 ./ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/bin/ -rwxr-xr-x root/root 133712 2022-08-12 09:33 ./usr/bin/bam2bedgraph -rwxr-xr-x root/root 2087 2022-08-12 09:33 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2022-08-12 09:33 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2022-08-12 09:33 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/ -rw-r--r-- root/root 11925 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/AlignWrapper.pm -rw-r--r-- root/root 17627 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Alignment.pm -rw-r--r-- root/root 335 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/FetchIterator.pm -rw-r--r-- root/root 2404 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Pileup.pm -rw-r--r-- root/root 1891 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/PileupWrapper.pm -rw-r--r-- root/root 4636 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/Query.pm -rw-r--r-- root/root 402 2022-08-12 09:33 ./usr/lib/arm-linux-gnueabihf/perl5/5.34/Bio/DB/Bam/ReadIterator.pm -rw-r--r-- root/root 1046 2022-08-12 09:33 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Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 3380 Build-Time: 30 Distribution: kinetic-proposed Host Architecture: armhf Install-Time: 20 Job: libbio-samtools-perl_1.43-3build4.dsc Machine Architecture: arm64 Package: libbio-samtools-perl Package-Time: 55 Source-Version: 1.43-3build4 Space: 3380 Status: successful Version: 1.43-3build4 -------------------------------------------------------------------------------- Finished at 2022-08-12T09:41:56Z Build needed 00:00:55, 3380k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24271170 Scanning for processes to kill in build PACKAGEBUILD-24271170