https://launchpad.net/ubuntu/+source/libbio-samtools-perl/1.43-3build4/+build/24271173 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-015 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:23:07 UTC 2022 s390x Buildd toolchain package versions: launchpad-buildd_218~581~ubuntu20.04.1 python3-lpbuildd_218~581~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 12 Aug 17:47:32 ntpdate[1831]: adjust time server 10.211.37.1 offset 0.001591 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=s390x PACKAGEBUILD-24271173 --image-type chroot /home/buildd/filecache-default/8d6e5c2c282d481a2b95f9f0f955907cdf6ab9d8 Creating target for build PACKAGEBUILD-24271173 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=s390x PACKAGEBUILD-24271173 Starting target for build PACKAGEBUILD-24271173 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=s390x PACKAGEBUILD-24271173 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24271173 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=s390x PACKAGEBUILD-24271173 Updating target for build PACKAGEBUILD-24271173 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main s390x Packages [1328 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe s390x Packages [13.3 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5787 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x Packages [137 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [51.7 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe s390x Packages [594 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [224 kB] Fetched 22.5 MB in 5s (4287 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-12 g++-12 gcc-12 libasan8 libfdisk1 libgcc-12-dev libstdc++-12-dev sgml-base util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-s390x-linux-gnu bsdutils cpp cpp-11 dash debianutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-11 gcc gcc-11 gcc-11-base gcc-12-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzma5 libmount1 libncurses6 libncursesw6 libnettle8 libperl5.34 libpng16-16 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.34 pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils zlib1g 114 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 262 MB of archives. After this operation, 573 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main s390x libcrypt-dev s390x 1:4.4.28-2 [114 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libc6-dev s390x 2.36-0ubuntu1 [1501 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libc-dev-bin s390x 2.36-0ubuntu1 [19.5 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main s390x libcrypt1 s390x 1:4.4.28-2 [83.0 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x linux-libc-dev s390x 5.19.0-15.15 [1290 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libtirpc-common all 1.3.3+ds-1 [7790 B] Get:7 http://ftpmaster.internal/ubuntu kinetic/main s390x libk5crypto3 s390x 1.20-1 [82.7 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main s390x libgssapi-krb5-2 s390x 1.20-1 [136 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main s390x libkrb5-3 s390x 1.20-1 [339 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main s390x libkrb5support0 s390x 1.20-1 [31.3 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main s390x libcom-err2 s390x 1.46.5-2ubuntu2 [8942 B] Get:12 http://ftpmaster.internal/ubuntu kinetic/main s390x libkeyutils1 s390x 1.6.1-3ubuntu1 [9706 B] Get:13 http://ftpmaster.internal/ubuntu kinetic/main s390x libssl3 s390x 3.0.4-1ubuntu1 [1569 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libtirpc-dev s390x 1.3.3+ds-1 [190 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libtirpc3 s390x 1.3.3+ds-1 [79.5 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libc6 s390x 2.36-0ubuntu1 [2628 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libc-bin s390x 2.36-0ubuntu1 [607 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libatomic1 s390x 12.1.0-8ubuntu1 [8940 B] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libubsan1 s390x 12.1.0-8ubuntu1 [958 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libitm1 s390x 12.1.0-8ubuntu1 [29.5 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libgomp1 s390x 12.1.0-8ubuntu1 [122 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x gcc-12-base s390x 12.1.0-8ubuntu1 [19.5 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libgcc-s1 s390x 12.1.0-8ubuntu1 [28.3 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libcc1-0 s390x 12.1.0-8ubuntu1 [45.5 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libstdc++6 s390x 12.1.0-8ubuntu1 [730 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main s390x base-files s390x 12.2ubuntu2 [73.2 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main s390x bsdutils s390x 1:2.38-4ubuntu1 [80.2 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main s390x debianutils s390x 5.7-0.3 [103 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main s390x libzstd1 s390x 1.5.2+dfsg-1 [252 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main s390x libgpg-error0 s390x 1.45-2 [69.5 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main s390x libgcrypt20 s390x 1.10.1-2ubuntu1 [468 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main s390x liblzma5 s390x 5.2.5-2.1 [98.6 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main s390x libblkid1 s390x 2.38-4ubuntu1 [99.7 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main s390x libuuid1 s390x 2.38-4ubuntu1 [23.2 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main s390x libfdisk1 s390x 2.38-4ubuntu1 [140 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main s390x systemd-sysv s390x 251.2-2ubuntu2 [11.2 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main s390x libapparmor1 s390x 3.0.4-3ubuntu1 [37.8 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main s390x libcryptsetup12 s390x 2:2.5.0-1ubuntu1 [207 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main s390x libip4tc2 s390x 1.8.7-1ubuntu6 [19.5 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main s390x libselinux1 s390x 3.4-1 [77.5 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main s390x libmount1 s390x 2.38-4ubuntu1 [118 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main s390x mount s390x 2.38-4ubuntu1 [113 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main s390x libsemanage-common all 3.4-1 [9828 B] Get:44 http://ftpmaster.internal/ubuntu kinetic/main s390x libsepol2 s390x 3.4-2 [278 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main s390x libsemanage2 s390x 3.4-1 [88.9 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main s390x passwd s390x 1:4.11.1+dfsg1-2ubuntu1 [763 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main s390x adduser all 3.121ubuntu1 [150 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main s390x systemd s390x 251.2-2ubuntu2 [4404 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main s390x libsystemd0 s390x 251.2-2ubuntu2 [315 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main s390x libudev1 s390x 251.2-2ubuntu2 [80.4 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x zlib1g s390x 1:1.2.11.dfsg-2ubuntu10 [64.6 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main s390x libapt-pkg6.0 s390x 2.5.2 [870 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main s390x dpkg s390x 1.21.9ubuntu1 [1322 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main s390x dash s390x 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.9 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main s390x login s390x 1:4.11.1+dfsg1-2ubuntu1 [182 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main s390x ncurses-bin s390x 6.3+20220423-2 [185 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main s390x libperl5.34 s390x 5.34.0-5ubuntu1 [4649 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main s390x perl s390x 5.34.0-5ubuntu1 [231 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main s390x perl-base s390x 5.34.0-5ubuntu1 [1695 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main s390x perl-modules-5.34 all 5.34.0-5ubuntu1 [2952 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.10 [691 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main s390x libsmartcols1 s390x 2.38-4ubuntu1 [50.0 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main s390x util-linux-extra s390x 2.38-4ubuntu1 [80.3 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main s390x util-linux s390x 2.38-4ubuntu1 [1063 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main s390x init-system-helpers all 1.64 [38.7 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main s390x ncurses-base all 6.3+20220423-2 [21.2 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libnettle8 s390x 3.8.1-2 [192 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libhogweed6 s390x 3.8.1-2 [199 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main s390x sgml-base all 1.30 [12.5 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main s390x libidn2-0 s390x 2.3.3-1 [63.2 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main s390x libgnutls30 s390x 3.7.7-2ubuntu1 [887 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main s390x gpgv s390x 2.2.27-3ubuntu3 [132 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main s390x apt s390x 2.5.2 [1349 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main s390x logsave s390x 1.46.5-2ubuntu2 [9812 B] Get:75 http://ftpmaster.internal/ubuntu kinetic/main s390x libext2fs2 s390x 1.46.5-2ubuntu2 [206 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main s390x e2fsprogs s390x 1.46.5-2ubuntu2 [578 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main s390x init s390x 1.64 [5538 B] Get:78 http://ftpmaster.internal/ubuntu kinetic/main s390x libcap-ng0 s390x 0.8.3-1 [15.4 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main s390x libncurses6 s390x 6.3+20220423-2 [109 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main s390x libncursesw6 s390x 6.3+20220423-2 [142 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main s390x libtinfo6 s390x 6.3+20220423-2 [99.3 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main s390x libss2 s390x 1.46.5-2ubuntu2 [12.0 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main s390x mawk s390x 1.3.4.20200120-3.1 [105 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main s390x readline-common all 8.1.2-1.2 [53.6 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main s390x libreadline8 s390x 8.1.2-1.2 [153 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main s390x libsqlite3-0 s390x 3.39.2-1 [639 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main s390x openssl s390x 3.0.4-1ubuntu1 [1163 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main s390x libpng16-16 s390x 1.6.37-5 [184 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main s390x xz-utils s390x 5.2.5-2.1 [83.2 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libctf0 s390x 2.39-1ubuntu1 [94.0 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libctf-nobfd0 s390x 2.39-1ubuntu1 [94.2 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libbinutils s390x 2.39-1ubuntu1 [425 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x binutils s390x 2.39-1ubuntu1 [3156 B] Get:94 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x binutils-common s390x 2.39-1ubuntu1 [223 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x binutils-s390x-linux-gnu s390x 2.39-1ubuntu1 [2055 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/main s390x libisl23 s390x 0.25-1 [706 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x cpp-12 s390x 12.1.0-8ubuntu1 [54.1 MB] Get:98 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libasan8 s390x 12.1.0-8ubuntu1 [2409 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libgcc-12-dev s390x 12.1.0-8ubuntu1 [853 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x gcc-12 s390x 12.1.0-8ubuntu1 [60.7 MB] Get:101 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x libstdc++-12-dev s390x 12.1.0-8ubuntu1 [2194 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x g++-12 s390x 12.1.0-8ubuntu1 [59.0 MB] Get:103 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x g++ s390x 4:12.1.0-3ubuntu1 [1408 B] Get:104 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x gcc s390x 4:12.1.0-3ubuntu1 [5122 B] Get:105 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x cpp s390x 4:12.1.0-3ubuntu1 [27.4 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic/main s390x libasan6 s390x 11.3.0-5ubuntu1 [2230 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main s390x g++-11 s390x 11.3.0-5ubuntu1 [9129 kB] Get:108 http://ftpmaster.internal/ubuntu kinetic/main s390x gcc-11 s390x 11.3.0-5ubuntu1 [15.7 MB] Get:109 http://ftpmaster.internal/ubuntu kinetic/main s390x libstdc++-11-dev s390x 11.3.0-5ubuntu1 [2081 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic/main s390x libgcc-11-dev s390x 11.3.0-5ubuntu1 [813 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main s390x cpp-11 s390x 11.3.0-5ubuntu1 [7806 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main s390x gcc-11-base s390x 11.3.0-5ubuntu1 [20.4 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main s390x dpkg-dev all 1.21.9ubuntu1 [1070 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main s390x libdpkg-perl all 1.21.9ubuntu1 [237 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main s390x lto-disabled-list all 32 [12.2 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main s390x libfakeroot s390x 1.29-1ubuntu1 [29.5 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main s390x fakeroot s390x 1.29-1ubuntu1 [59.5 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main s390x libassuan0 s390x 2.5.5-4 [34.9 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main s390x pinentry-curses s390x 1.2.0-2ubuntu1 [34.6 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main s390x gpg s390x 2.2.27-3ubuntu3 [499 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main s390x gpgconf s390x 2.2.27-3ubuntu3 [92.5 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/main s390x gpg-agent s390x 2.2.27-3ubuntu3 [202 kB] Get:123 http://ftpmaster.internal/ubuntu kinetic/main s390x policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 262 MB in 15s (17.2 MB/s) (Reading database ... 13220 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.28-2_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.28-2) over (1:4.4.27-1) ... Preparing to unpack .../libc6-dev_2.36-0ubuntu1_s390x.deb ... Unpacking libc6-dev:s390x (2.36-0ubuntu1) over (2.35-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.36-0ubuntu1_s390x.deb ... Unpacking libc-dev-bin (2.36-0ubuntu1) over (2.35-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.28-2_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.28-2) over (1:4.4.27-1) ... Setting up libcrypt1:s390x (1:4.4.28-2) ... (Reading database ... 13228 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.19.0-15.15_s390x.deb ... Unpacking linux-libc-dev:s390x (5.19.0-15.15) over (5.15.0-27.28) ... Preparing to unpack .../01-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) over (1.3.2-2build1) ... Preparing to unpack .../02-libk5crypto3_1.20-1_s390x.deb ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24271173 s390x kinetic-proposed -c chroot:build-PACKAGEBUILD-24271173 --arch=s390x --dist=kinetic-proposed --nolog libbio-samtools-perl_1.43-3build4.dsc Initiating build PACKAGEBUILD-24271173 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:23:07 UTC 2022 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-015.buildd +==============================================================================+ | libbio-samtools-perl 1.43-3build4 (s390x) Fri, 12 Aug 2022 17:48:20 +0000 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-3build4 Source Version: 1.43-3build4 Distribution: kinetic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24271173/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-c8K80R/resolver-q2MrwH' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-samtools-perl_1.43-3build4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-c8K80R/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-c8K80R' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [487 B] Fetched 1852 B in 0s (109 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libdata-stag-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libperl-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 22.9 MB of archives. After this operation, 83.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [706 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main s390x libelf1 s390x 0.187-1 [55.5 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main s390x libicu71 s390x 71.1-3 [10.5 MB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main s390x libxml2 s390x 2.9.14+dfsg-1 [706 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main s390x bsdextrautils s390x 2.38-4ubuntu1 [71.6 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main s390x libmagic-mgc s390x 1:5.41-4 [258 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main s390x libmagic1 s390x 1:5.41-4 [84.8 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main s390x file s390x 1:5.41-4 [21.4 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main s390x gettext-base s390x 0.21-6 [37.9 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main s390x groff-base s390x 1.22.4-8build1 [928 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main s390x libpipeline1 s390x 1.5.6-1 [23.3 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main s390x man-db s390x 2.10.2-1 [1183 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main s390x libsigsegv2 s390x 2.13-1ubuntu3 [14.5 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main s390x m4 s390x 1.4.18-5ubuntu2 [197 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main s390x autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main s390x autopoint all 0.21-6 [421 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main s390x libdebhelper-perl all 13.8ubuntu1 [66.8 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main s390x libtool all 2.4.7-4 [166 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main s390x dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main s390x libsub-override-perl all 0.09-3 [9756 B] Get:25 http://ftpmaster.internal/ubuntu kinetic/main s390x libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main s390x dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:27 http://ftpmaster.internal/ubuntu kinetic/main s390x libdw1 s390x 0.187-1 [245 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main s390x dwz s390x 0.14-1build2 [104 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main s390x gettext s390x 0.21-6 [850 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main s390x debhelper all 13.8ubuntu1 [938 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic-proposed/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2ubuntu10 [168 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/universe s390x libbam-dev s390x 0.1.19+dfsg-5ubuntu1 [116 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main s390x libio-string-perl all 1.08-3.1 [10.7 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/universe s390x libdata-stag-perl all 0.14-3 [372 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/universe s390x libbio-perl-perl all 1.7.8-1 [2580 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/universe s390x libmodule-build-perl all 0.423100-1 [200 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main s390x libperl-dev s390x 5.34.0-5ubuntu1 [1099 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.9 MB in 2s (11.3 MB/s) Selecting previously unselected package libelf1:s390x. (Reading database ... 14350 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.187-1_s390x.deb ... Unpacking libelf1:s390x (0.187-1) ... Selecting previously unselected package libicu71:s390x. Preparing to unpack .../01-libicu71_71.1-3_s390x.deb ... Unpacking libicu71:s390x (71.1-3) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1_s390x.deb ... Unpacking libxml2:s390x (2.9.14+dfsg-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38-4ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_s390x.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../05-libmagic1_1%3a5.41-4_s390x.deb ... Unpacking libmagic1:s390x (1:5.41-4) ... 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Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbam-dev (0.1.19+dfsg-5ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.8ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:23:07 UTC 2022 s390x (s390x) Toolchain package versions: binutils_2.39-1ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-8ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-12_12.1.0-8ubuntu1 libc6-dev_2.36-0ubuntu1 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-8ubuntu1 libstdc++6_12.1.0-8ubuntu1 linux-libc-dev_5.19.0-15.15 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.39-1ubuntu1 binutils-common_2.39-1ubuntu1 binutils-s390x-linux-gnu_2.39-1ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:12.1.0-3ubuntu1 cpp-11_11.3.0-5ubuntu1 cpp-12_12.1.0-8ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.8ubuntu1 debianutils_5.7-0.3 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:12.1.0-3ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-8ubuntu1 gcc_4:12.1.0-3ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-11-base_11.3.0-5ubuntu1 gcc-12_12.1.0-8ubuntu1 gcc-12-base_12.1.0-8ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu3 gpg-agent_2.2.27-3ubuntu3 gpgconf_2.2.27-3ubuntu3 gpgv_2.2.27-3ubuntu3 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 init_1.64 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.4-3ubuntu1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-5ubuntu1 libasan8_12.1.0-8ubuntu1 libassuan0_2.5.5-4 libatomic1_12.1.0-8ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbam-dev_0.1.19+dfsg-5ubuntu1 libbinutils_2.39-1ubuntu1 libbio-perl-perl_1.7.8-1 libblkid1_2.38-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu1 libc-dev-bin_2.36-0ubuntu1 libc6_2.36-0ubuntu1 libc6-dev_2.36-0ubuntu1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1build3 libcc1-0_12.1.0-8ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-1ubuntu1 libctf-nobfd0_2.39-1ubuntu1 libctf0_2.39-1ubuntu1 libdata-stag-perl_0.14-3 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.8ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.9ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-5ubuntu1 libgcc-12-dev_12.1.0-8ubuntu1 libgcc-s1_12.1.0-8ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.7-2ubuntu1 libgomp1_12.1.0-8ubuntu1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-string-perl_1.08-3.1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.25-1 libitm1_12.1.0-8ubuntu1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmodule-build-perl_0.423100-1 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl-dev_5.34.0-5ubuntu1 libperl5.34_5.34.0-5ubuntu1 libpipeline1_1.5.6-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libreadline8_8.1.2-1.2 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2ubuntu2 libssl3_3.0.4-1ubuntu1 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-8ubuntu1 libstdc++6_12.1.0-8ubuntu1 libsub-override-perl_0.09-3 libsystemd0_251.2-2ubuntu2 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.1.0-8ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.2-2ubuntu2 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-15.15 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_32 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.4-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-5ubuntu1 perl-base_5.34.0-5ubuntu1 perl-modules-5.34_5.34.0-5ubuntu1 pinentry-curses_1.2.0-2ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.2-2ubuntu2 systemd-sysv_251.2-2ubuntu2 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu10 zlib1g-dev_1:1.2.11.dfsg-2ubuntu10 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-3build4 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), perl-xs-dev, perl:native, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz 0761d2ab5dcc58d11719e1d34915110de88f38fb 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz ba59a2e5ce0c432ca80eafd9a26598214d89935339795e601983ee19a0e53042 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz 6258bc88cc924665c75d97dbad942b08 8484 libbio-samtools-perl_1.43-3build4.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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dpkg-source: info: unpacking libbio-samtools-perl_1.43-3build4.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24271173 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24271173 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24271173 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-3build4 dpkg-buildpackage: info: source distribution kinetic dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro" Found /usr/include/samtools/bam.h and //lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a /usr/bin/perl Build Building Bio-SamTools s390x-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/s390x-linux-gnu/perl/5.34/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c s390x-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/s390x-linux-gnu/perl/5.34/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam_sort_core’: lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function ‘bam_sort_core’; did you mean ‘bam_format1_core’? [-Wimplicit-function-declaration] 324 | bam_sort_core(is_by_qname,filename,prefix,max_mem); | ^~~~~~~~~~~~~ | bam_format1_core lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Header_view1’: lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function ‘bam_view1’ [-Wimplicit-function-declaration] 916 | bam_view1(bamh,alignment); | ^~~~~~~~~ ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -L//lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/<>/c_bin' dh_auto_test -a /usr/bin/perl Build test --verbose 1 make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.034000 for linux # Current time local: Fri Aug 12 17:48:36 2022 # Current time GMT: Fri Aug 12 17:48:36 2022 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 1 wallclock secs ( 0.03 usr 0.01 sys + 0.68 cusr 0.07 csys = 0.79 CPU) Result: PASS create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libbio-samtools-perl/ -a /usr/bin/perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/libbio-samtools-perl/usr/lib/s390x-linux-gnu/perl5/5.34/auto/Bio/DB/Sam/Sam.so: Unknown DWARF DW_FORM_0x1f20 a67347661a605e02af87e26c313d4d64daaf95a9 debugedit: debian/libbio-samtools-perl/usr/bin/bam2bedgraph: Unknown DWARF DW_FORM_0x1f20 365d302dea9a1fd838815c84302b1f7ccb20099f dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libbio-samtools-perl (in debian/libbio-samtools-perl); do_strip: , oemstrip: pkgstriptranslations: processing libbio-samtools-perl-dbgsym (in debian/.debhelper/libbio-samtools-perl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libbio-samtools-perl/dbgsym-root/DEBIAN/control, package libbio-samtools-perl-dbgsym, directory debian/.debhelper/libbio-samtools-perl/dbgsym-root dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libbio-samtools-perl/libbio-samtools-perl-dbgsym_1.43-3build4_s390x.deb'. pkgstripfiles: processing control file: debian/libbio-samtools-perl/DEBIAN/control, package libbio-samtools-perl, directory debian/libbio-samtools-perl pkgstripfiles: Truncating usr/share/doc/libbio-samtools-perl/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-samtools-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-3build4_s390x.deb'. Renaming libbio-samtools-perl-dbgsym_1.43-3build4_s390x.deb to libbio-samtools-perl-dbgsym_1.43-3build4_s390x.ddeb dpkg-genbuildinfo --build=any -O../libbio-samtools-perl_1.43-3build4_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbio-samtools-perl_1.43-3build4_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-12T17:48:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build4_s390x.changes: ------------------------------------------------ Format: 1.8 Date: Fri, 12 Aug 2022 11:33:17 +0200 Source: libbio-samtools-perl Binary: libbio-samtools-perl Built-For-Profiles: noudeb Architecture: s390x Version: 1.43-3build4 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Olivier Gayot Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Launchpad-Bugs-Fixed: 1983255 Changes: libbio-samtools-perl (1.43-3build4) kinetic; urgency=medium . * No-change rebuild against samtools-legacy (LP: #1983255) Checksums-Sha1: 724ac0002e45ef5eaa775a431e4d62c6fa6ee57e 98778 libbio-samtools-perl-dbgsym_1.43-3build4_s390x.ddeb 2f78276bf92b1cc50092a851e808b80dffd44033 6110 libbio-samtools-perl_1.43-3build4_s390x.buildinfo aae20313bb55e87e5fca31d994deb75158cfce68 193772 libbio-samtools-perl_1.43-3build4_s390x.deb Checksums-Sha256: ec647f9c266e6ffd3bccb20f394fdc7ef0d20791b8e3f5fdf7008ff5d1256c74 98778 libbio-samtools-perl-dbgsym_1.43-3build4_s390x.ddeb 5f46a2bb711f36cf2bee0973184be830f2faec86a80ae41ce889f7c1499ad20a 6110 libbio-samtools-perl_1.43-3build4_s390x.buildinfo 57b68e853ddac9760b2a68f9e4fe028e558ee45bb8205e31a2eb837e1012a911 193772 libbio-samtools-perl_1.43-3build4_s390x.deb Files: 5220f3c79024334a348311850e77f8a1 98778 debug optional libbio-samtools-perl-dbgsym_1.43-3build4_s390x.ddeb e71d594b59c19ddd7cfd2980dd8715e2 6110 perl optional libbio-samtools-perl_1.43-3build4_s390x.buildinfo 34d6d00abf96bd2c6e1eb9f82fe618af 193772 perl optional libbio-samtools-perl_1.43-3build4_s390x.deb /<>/libbio-samtools-perl_1.43-3build4_s390x.changes.new could not be renamed to /<>/libbio-samtools-perl_1.43-3build4_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: s390x Version: 1.43-3build4 Checksums-Md5: 5220f3c79024334a348311850e77f8a1 98778 libbio-samtools-perl-dbgsym_1.43-3build4_s390x.ddeb 34d6d00abf96bd2c6e1eb9f82fe618af 193772 libbio-samtools-perl_1.43-3build4_s390x.deb Checksums-Sha1: 724ac0002e45ef5eaa775a431e4d62c6fa6ee57e 98778 libbio-samtools-perl-dbgsym_1.43-3build4_s390x.ddeb aae20313bb55e87e5fca31d994deb75158cfce68 193772 libbio-samtools-perl_1.43-3build4_s390x.deb Checksums-Sha256: ec647f9c266e6ffd3bccb20f394fdc7ef0d20791b8e3f5fdf7008ff5d1256c74 98778 libbio-samtools-perl-dbgsym_1.43-3build4_s390x.ddeb 57b68e853ddac9760b2a68f9e4fe028e558ee45bb8205e31a2eb837e1012a911 193772 libbio-samtools-perl_1.43-3build4_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Fri, 12 Aug 2022 17:48:41 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.39-1ubuntu1), binutils-common (= 2.39-1ubuntu1), binutils-s390x-linux-gnu (= 2.39-1ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.1.0-3ubuntu1), cpp-11 (= 11.3.0-5ubuntu1), cpp-12 (= 12.1.0-8ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.8ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:12.1.0-3ubuntu1), g++-12 (= 12.1.0-8ubuntu1), gcc (= 4:12.1.0-3ubuntu1), gcc-11 (= 11.3.0-5ubuntu1), gcc-11-base (= 11.3.0-5ubuntu1), gcc-12 (= 12.1.0-8ubuntu1), gcc-12-base (= 12.1.0-8ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-5ubuntu1), libasan8 (= 12.1.0-8ubuntu1), libatomic1 (= 12.1.0-8ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbam-dev (= 0.1.19+dfsg-5ubuntu1), libbinutils (= 2.39-1ubuntu1), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu1), libc-dev-bin (= 2.36-0ubuntu1), libc6 (= 2.36-0ubuntu1), libc6-dev (= 2.36-0ubuntu1), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-8ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.39-1ubuntu1), libctf0 (= 2.39-1ubuntu1), libdata-stag-perl (= 0.14-3), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.8ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5ubuntu1), libgcc-12-dev (= 12.1.0-8ubuntu1), libgcc-s1 (= 12.1.0-8ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 12.1.0-8ubuntu1), libgpg-error0 (= 1.45-2), libgssapi-krb5-2 (= 1.20-1), libicu71 (= 71.1-3), libio-string-perl (= 1.08-3.1), libisl23 (= 0.25-1), libitm1 (= 12.1.0-8ubuntu1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmodule-build-perl (= 0.423100-1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl-dev (= 5.34.0-5ubuntu1), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libssl3 (= 3.0.4-1ubuntu1), libstdc++-12-dev (= 12.1.0-8ubuntu1), libstdc++6 (= 12.1.0-8ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.2-2ubuntu2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libubsan1 (= 12.1.0-8ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.2-2ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-15.15), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 32), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu10), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu10) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1660296797" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-3build4_s390x.deb ------------------------------------------- new Debian package, version 2.0. size 193772 bytes: control archive=1695 bytes. 1077 bytes, 20 lines control 2437 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-3build4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 626 Depends: perl (>= 5.34.0-5ubuntu1), perlapi-5.34.0, libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2022-08-12 09:33 ./ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/bin/ -rwxr-xr-x root/root 138616 2022-08-12 09:33 ./usr/bin/bam2bedgraph -rwxr-xr-x root/root 2087 2022-08-12 09:33 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2022-08-12 09:33 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2022-08-12 09:33 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/s390x-linux-gnu/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/s390x-linux-gnu/perl5/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/s390x-linux-gnu/perl5/5.34/ drwxr-xr-x root/root 0 2022-08-12 09:33 ./usr/lib/s390x-linux-gnu/perl5/5.34/Bio/ drwxr-xr-x root/root 0 2022-08-12 09:33 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2948 2022-08-12 09:33 ./usr/share/man/man3/Bio::DB::Bam::Pileup.3pm.gz -rw-r--r-- root/root 2294 2022-08-12 09:33 ./usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm.gz -rw-r--r-- root/root 2959 2022-08-12 09:33 ./usr/share/man/man3/Bio::DB::Bam::Query.3pm.gz -rw-r--r-- root/root 1963 2022-08-12 09:33 ./usr/share/man/man3/Bio::DB::Bam::Target.3pm.gz -rw-r--r-- root/root 20887 2022-08-12 09:33 ./usr/share/man/man3/Bio::DB::Sam.3pm.gz -rw-r--r-- root/root 2450 2022-08-12 09:33 ./usr/share/man/man3/Bio::DB::Sam::Constants.3pm.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 4384 Build-Time: 12 Distribution: kinetic-proposed Host Architecture: s390x Install-Time: 8 Job: libbio-samtools-perl_1.43-3build4.dsc Machine Architecture: s390x Package: libbio-samtools-perl Package-Time: 21 Source-Version: 1.43-3build4 Space: 4384 Status: successful Version: 1.43-3build4 -------------------------------------------------------------------------------- Finished at 2022-08-12T17:48:41Z Build needed 00:00:21, 4384k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=s390x PACKAGEBUILD-24271173 Scanning for processes to kill in build PACKAGEBUILD-24271173