https://launchpad.net/ubuntu/+source/libbio-tools-phylo-paml-perl/1.7.3-4/+build/24611232 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-033 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Nov 03:28:19 ntpdate[1782]: adjust time server 10.131.248.1 offset 0.004591 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24611232 --image-type chroot /home/buildd/filecache-default/93056656ffca866e6c2a454f453b424a388b800f Creating target for build PACKAGEBUILD-24611232 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24611232 Starting target for build PACKAGEBUILD-24611232 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24611232 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24611232 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24611232 Updating target for build PACKAGEBUILD-24611232 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 Packages [1390 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe amd64 Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5791 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 Packages [222 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [78.2 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 Packages [581 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [233 kB] Fetched 23.7 MB in 2s (9809 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-x86-64-linux-gnu cpp-12 fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg6.0 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libctf-nobfd0 libctf0 libfakeroot libgcc-12-dev libgcc-s1 libgnutls30 libgomp1 libgpg-error0 libgprofng0 libidn2-0 libitm1 liblsan0 libp11-kit0 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtsan2 libubsan1 libudev1 linux-libc-dev lto-disabled-list perl perl-base readline-common systemd systemd-sysv tzdata usrmerge zlib1g 66 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 90.6 MB of archives. After this operation, 47.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar/main amd64 libc6-dev amd64 2.36-0ubuntu4 [2088 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main amd64 libc-dev-bin amd64 2.36-0ubuntu4 [20.0 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 linux-libc-dev amd64 5.19.0-23.24 [1345 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main amd64 libcc1-0 amd64 12.2.0-9ubuntu1 [46.4 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 gcc-12-base amd64 12.2.0-9ubuntu1 [19.5 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main amd64 libgcc-s1 amd64 12.2.0-9ubuntu1 [54.2 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main amd64 libgomp1 amd64 12.2.0-9ubuntu1 [125 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main amd64 libitm1 amd64 12.2.0-9ubuntu1 [29.4 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main amd64 libatomic1 amd64 12.2.0-9ubuntu1 [10.4 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main amd64 libasan8 amd64 12.2.0-9ubuntu1 [2433 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main amd64 liblsan0 amd64 12.2.0-9ubuntu1 [1060 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main amd64 libtsan2 amd64 12.2.0-9ubuntu1 [2456 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main amd64 libubsan1 amd64 12.2.0-9ubuntu1 [969 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main amd64 libquadmath0 amd64 12.2.0-9ubuntu1 [152 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main amd64 g++-12 amd64 12.2.0-9ubuntu1 [12.0 MB] Get:16 http://ftpmaster.internal/ubuntu lunar/main amd64 libstdc++-12-dev amd64 12.2.0-9ubuntu1 [2158 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main amd64 libgcc-12-dev amd64 12.2.0-9ubuntu1 [2577 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main amd64 gcc-12 amd64 12.2.0-9ubuntu1 [21.4 MB] Get:19 http://ftpmaster.internal/ubuntu lunar/main amd64 cpp-12 amd64 12.2.0-9ubuntu1 [10.6 MB] Get:20 http://ftpmaster.internal/ubuntu lunar/main amd64 libstdc++6 amd64 12.2.0-9ubuntu1 [678 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-4.1ubuntu2 [58.8 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgprofng0 amd64 2.39-8ubuntu2 [897 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf0 amd64 2.39-8ubuntu2 [97.4 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf-nobfd0 amd64 2.39-8ubuntu2 [99.9 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbinutils amd64 2.39-8ubuntu2 [610 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-common amd64 2.39-8ubuntu2 [233 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils amd64 2.39-8ubuntu2 [3240 B] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.39-8ubuntu2 [2402 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main amd64 libc6 amd64 2.36-0ubuntu4 [3163 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main amd64 base-files amd64 12.3ubuntu1 [73.4 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main amd64 bash amd64 5.2-1ubuntu2 [788 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libperl5.36 amd64 5.36.0-4ubuntu2 [4808 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl amd64 5.36.0-4ubuntu2 [235 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-base amd64 5.36.0-4ubuntu2 [1779 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main amd64 libc-bin amd64 2.36-0ubuntu4 [675 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapparmor1 amd64 3.0.7-1ubuntu3 [36.8 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcap-ng0 amd64 0.8.3-1build1 [15.2 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit1 amd64 1:3.0.7-1ubuntu2 [45.4 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libseccomp2 amd64 2.5.4-1ubuntu2 [46.2 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libselinux1 amd64 3.4-1build1 [77.9 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main amd64 systemd-sysv amd64 251.4-1ubuntu7 [11.2 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main amd64 systemd amd64 251.4-1ubuntu7 [2808 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main amd64 libsystemd-shared amd64 251.4-1ubuntu7 [1703 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main amd64 libsystemd0 amd64 251.4-1ubuntu7 [323 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main amd64 libudev1 amd64 251.4-1ubuntu7 [79.8 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapt-pkg6.0 amd64 2.5.4 [902 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgpg-error0 amd64 1.46-1 [68.9 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgv amd64 2.2.40-1ubuntu1 [137 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main amd64 libidn2-0 amd64 2.3.3-1build1 [62.9 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main amd64 libp11-kit0 amd64 0.24.1-1ubuntu2 [246 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main amd64 libgnutls30 amd64 3.7.7-2ubuntu2 [976 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 apt amd64 2.5.4 [1378 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main amd64 libsemanage-common all 3.4-1build1 [9544 B] Get:56 http://ftpmaster.internal/ubuntu lunar/main amd64 libsemanage2 amd64 3.4-1build1 [93.2 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main amd64 usrmerge all 29ubuntu2 [55.8 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main amd64 readline-common all 8.2-1 [55.1 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main amd64 libreadline8 amd64 8.2-1 [150 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main amd64 libsqlite3-0 amd64 3.39.3-1 [655 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main amd64 tzdata all 2022f-0ubuntu1 [400 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main amd64 libpng16-16 amd64 1.6.38-2 [186 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libfakeroot amd64 1.30.1-1ubuntu1 [30.9 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 fakeroot amd64 1.30.1-1ubuntu1 [60.1 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg amd64 2.2.40-1ubuntu1 [523 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgconf amd64 2.2.40-1ubuntu1 [93.8 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg-agent amd64 2.2.40-1ubuntu1 [217 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main amd64 lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 90.6 MB in 1s (79.1 MB/s) (Reading database ... 13569 files and directories currently installed.) 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Processing triggers for debianutils (5.7-0.3) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24611232 amd64 lunar-proposed -c chroot:build-PACKAGEBUILD-24611232 --arch=amd64 --dist=lunar-proposed --nolog -A libbio-tools-phylo-paml-perl_1.7.3-4.dsc Initiating build PACKAGEBUILD-24611232 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-033.buildd +==============================================================================+ | libbio-tools-phylo-paml-perl 1.7.3-4 (amd64) Sun, 06 Nov 2022 03:28:39 +0000 | +==============================================================================+ Package: libbio-tools-phylo-paml-perl Version: 1.7.3-4 Source Version: 1.7.3-4 Distribution: lunar-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24611232/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-tools-phylo-paml-perl-H4pbyJ/resolver-tTGhQP' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-tools-phylo-paml-perl_1.7.3-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-tools-phylo-paml-perl-H4pbyJ/libbio-tools-phylo-paml-perl-1.7.3' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-tools-phylo-paml-perl-H4pbyJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [416 B] Get:5 copy:/<>/apt_archive ./ Packages [491 B] Fetched 1864 B in 0s (137 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libdw1 libelf1 libfile-sort-perl libfile-stripnondeterminism-perl libicu71 libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db paml po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl libalgorithm-diff-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libdw1 libelf1 libfile-sort-perl libfile-stripnondeterminism-perl libicu71 libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db paml po-debconf sbuild-build-depends-main-dummy 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 22.9 MB of archives. After this operation, 81.2 MB of additional disk space will be used. 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Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.0 bash_5.2-1ubuntu2 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libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan2_12.2.0-9ubuntu1 libubsan1_12.2.0-9ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.4-1ubuntu7 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1build1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.2ubuntu1 lto-disabled-list_35 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu1 optipng_0.7.7-2build1 paml_4.9j+dfsg-3 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.36.0-4ubuntu2 perl-base_5.36.0-4ubuntu2 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-4ubuntu2 pinentry-curses_1.2.0-2ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 readline-common_8.2-1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.4-1ubuntu7 systemd-sysv_251.4-1ubuntu7 sysvinit-utils_3.04-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022f-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_29ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-tools-phylo-paml-perl Binary: libbio-tools-phylo-paml-perl Architecture: all Version: 1.7.3-4 Maintainer: Debian Perl Group Uploaders: David Miguel Susano Pinto Homepage: https://metacpan.org/release/Bio-Tools-Phylo-PAML Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-phylo-paml-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-phylo-paml-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl Package-List: libbio-tools-phylo-paml-perl deb science optional arch=all Checksums-Sha1: 4ced4b0905ad258cb119656f84b442bca950487a 137819 libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz 234b33e8fc175f177e68c60041fa8a1bdabc5f86 2784 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz Checksums-Sha256: 424dccca82b61e3daf62f52e33de35efdbe1b69644d07015e987671fa7130cb4 137819 libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz f88ff3149e7272680b64d89a0d95890eecebb6497a60a74aa2aa842c325ccee1 2784 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz Files: 0030a118c958b93967a470b8bc3e21a0 137819 libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz b4cf89175f37313b9dc0fc1f21c1cc33 2784 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEsjhixBXWVlpOhsvXV5wWDUyeI+gFAmNJdpAACgkQV5wWDUye I+gqLg/+Ku4XXZstK3dvLrd+rN1e3wlK9Fsw1yKcQXRtYcSmKzedT/zsh6b1P2dG fJlzOzE3QJ6taQhe7Z5nsU7tOi7TiqVXHgg/tYWRSfupUcjX8SoHKii4tT9KhcLQ OFV1cxJPQSDJHhhrGxZCL04AkcFacqUrb2tSnIEt9W6TJ0VV1B2gNv7FT+MFqbt4 +rPckZusLu6zYcG4WANwbSd2Da/31kZuzHXYvkScIKfi13VTSfQEF9wWhEDkworM dSmqqm0PQzbwW3dBjUCPKevG6/C47VWyTQFwhvH4toHN2iJZnRo/kMNbL79w27s1 dTR1GBRdfhxj7BJtenlSvnTdYt/NivjD9fyifvA+B7taEzZMjtEF/kDPrE3vziOz Myo05Gh3E2GWTaQeZxcTzy4xrdJTHY99kJFbGyVwM5DsBFOaOsEbjPoWr4VU20r6 hnDrRO5AAU9mqlfwJITwFmWf+6WrmiET3wKkg32lNUQhlAul7TddkyU8Fy7wJUeU FyzOO7J8/gK1FNr6hzlTbrCWChqQbzGfk636zfh1XN0UMMnR+z/FKlGI2ugS7SML 7uXj2ZVnWSWphvBdhuqcnMS8irzSR5kI+G+hDevz1WdjXK5tPh1DVkxbAAMZgx2Q OTlwTn16NHsb/76LbBIMGhZQHDVgTl7c/bB7gAacSUJry2x8/VE= =wlFv -----END PGP SIGNATURE----- gpgv: Signature made Fri Oct 14 14:47:44 2022 UTC gpgv: using RSA key B23862C415D6565A4E86CBD7579C160D4C9E23E8 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libbio-tools-phylo-paml-perl_1.7.3-4.dsc dpkg-source: info: extracting libbio-tools-phylo-paml-perl in /<> dpkg-source: info: unpacking libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying evolver-program-name.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24611232 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24611232 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24611232 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package libbio-tools-phylo-paml-perl dpkg-buildpackage: info: source version 1.7.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro" Warning: prerequisite Bio::Tools::Run::Alignment::Clustalw 0 not found. Warning: prerequisite Bio::Tools::Run::Alignment::TCoffee 0 not found. Locating bin:basemlg... found at /usr/bin/basemlg. Locating bin:codeml... found at /usr/bin/codeml. Locating bin:paml-evolver... found at /usr/bin/paml-evolver. Locating bin:yn00... found at /usr/bin/yn00. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Tools::Phylo::PAML Writing MYMETA.yml and MYMETA.json dh_auto_build make -j4 make[1]: Entering directory '/<>' cp lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm cp lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm cp lib/Bio/Tools/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Phylo/PAML/Codeml.pm cp lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm cp lib/Bio/Tools/Phylo/PAML/ModelResult.pm blib/lib/Bio/Tools/Phylo/PAML/ModelResult.pm cp lib/Bio/Tools/Phylo/PAML/Result.pm blib/lib/Bio/Tools/Phylo/PAML/Result.pm cp lib/Bio/Tools/Phylo/PAML.pm blib/lib/Bio/Tools/Phylo/PAML.pm cp lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm cp bin/bp_pairwise_kaks blib/script/bp_pairwise_kaks "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_pairwise_kaks Manifying 1 pod document Manifying 8 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..9 ok 1 - Bio/Tools/Phylo/PAML.pm loaded ok ok 2 - Bio/Tools/Phylo/PAML/Codeml.pm loaded ok ok 3 - Bio/Tools/Phylo/PAML/ModelResult.pm loaded ok ok 4 - Bio/Tools/Phylo/PAML/Result.pm loaded ok ok 5 - Bio/Tools/Run/Phylo/PAML/Baseml.pm loaded ok ok 6 - Bio/Tools/Run/Phylo/PAML/Codeml.pm loaded ok ok 7 - Bio/Tools/Run/Phylo/PAML/Evolver.pm loaded ok ok 8 - Bio/Tools/Run/Phylo/PAML/Yn00.pm loaded ok ok 9 # skip bin/bp_pairwise_kaks isn't perl ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-no-tabs.t ....... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/PAML-parser.t .......... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 - node\#8 reconstructed seq ok 163 - ancestral AA ok 164 - ancestral AA ok 165 - derived AA ok 166 - ancestral AA ok 167 - ancestral AA ok 168 - derived AA ok 169 - derived AA ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 - codeml 4.3 runmode=-2 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 - codeml 4.3 two NSSites models ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 - NEB positively selected sites ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 - bug 3040 ok 251 - bug 3365 ok 252 - bug 3366 ok 253 - bug 3367 ok 254 - bug 3332 ok 255 - bug 3331 1..255 ok t/PAML-run.t ............. ok 1 ok 2 ok 3 - got results ok 4 - got a result ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - got results ok 15 - got a result ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 - got results ok 29 1..29 ok All tests successful. Files=8, Tests=293, 2 wallclock secs ( 0.05 usr 0.01 sys + 1.64 cusr 0.18 csys = 1.88 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-tools-phylo-paml-perl/ make -j4 install DESTDIR=/<>/debian/libbio-tools-phylo-paml-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 1 pod document Manifying 8 pod documents Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Codeml.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Baseml.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Yn00.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Evolver.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/ModelResult.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Codeml.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Result.pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man1/bp_pairwise_kaks.1p Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Evolver.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Codeml.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Baseml.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::ModelResult.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Result.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Codeml.3pm Installing /<>/debian/libbio-tools-phylo-paml-perl/usr/bin/bp_pairwise_kaks make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install sed -i '1s|^#!/usr/bin/env perl|#!/usr/bin/perl|' /<>/debian/libbio-tools-phylo-paml-perl/usr/bin/bp_pairwise_kaks make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libbio-tools-phylo-paml-perl (in debian/libbio-tools-phylo-paml-perl); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-tools-phylo-paml-perl/DEBIAN/control, package libbio-tools-phylo-paml-perl, directory debian/libbio-tools-phylo-paml-perl pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-tools-phylo-paml-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-tools-phylo-paml-perl' in '../libbio-tools-phylo-paml-perl_1.7.3-4_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../libbio-tools-phylo-paml-perl_1.7.3-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-06T03:28:50Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-tools-phylo-paml-perl_1.7.3-4_amd64.changes: --------------------------------------------------- Format: 1.8 Date: Fri, 14 Oct 2022 15:47:06 +0100 Source: libbio-tools-phylo-paml-perl Binary: libbio-tools-phylo-paml-perl Built-For-Profiles: noudeb Architecture: all Version: 1.7.3-4 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Jelmer Vernooij Description: libbio-tools-phylo-paml-perl - Bioperl interface to the PAML suite Changes: libbio-tools-phylo-paml-perl (1.7.3-4) unstable; urgency=medium . [ Debian Janitor ] * Update standards version to 4.5.1, no changes needed. * Remove constraints unnecessary since buster * Update standards version to 4.6.0, no changes needed. Checksums-Sha1: 42deffcd65010cb64a59e65125b36fdc874bd246 80720 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb bec20e65569ebf31875f42e569f194dfecd64c10 6304 libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo Checksums-Sha256: 8cba632a035d4c8e4e91189fe2f1c19872948b3e48c462e715f1c826e93ea4cd 80720 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb 7c968e66504549e9fc1efa0988dd249cc7f950c3858036b6347865accfbdcb80 6304 libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo Files: 4fa7bf8794f2db3619882b37fb9c74ea 80720 science optional libbio-tools-phylo-paml-perl_1.7.3-4_all.deb 337ef6a313e6b0983b0e227c3a2b6471 6304 science optional libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo /<>/libbio-tools-phylo-paml-perl_1.7.3-4_amd64.changes.new could not be renamed to /<>/libbio-tools-phylo-paml-perl_1.7.3-4_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-tools-phylo-paml-perl Binary: libbio-tools-phylo-paml-perl Architecture: all Version: 1.7.3-4 Checksums-Md5: 4fa7bf8794f2db3619882b37fb9c74ea 80720 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb Checksums-Sha1: 42deffcd65010cb64a59e65125b36fdc874bd246 80720 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb Checksums-Sha256: 8cba632a035d4c8e4e91189fe2f1c19872948b3e48c462e715f1c826e93ea4cd 80720 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Sun, 06 Nov 2022 03:28:50 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.0), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), binutils-x86-64-linux-gnu (= 2.39-8ubuntu2), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1ubuntu3), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan8 (= 12.2.0-9ubuntu1), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39-8ubuntu2), libbio-perl-perl (= 1.7.8-1), libbio-perl-run-perl (= 1.7.3-8), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2ubuntu1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libdata-stag-perl (= 0.14-3), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdevel-checkbin-perl (= 0.04-2), libdevmapper1.02.1 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(= 12.2.0-9ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1build1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), mount (= 2.38-4ubuntu1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), paml (= 4.9j+dfsg-3), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), systemd (= 251.4-1ubuntu7), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1665758826" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-tools-phylo-paml-perl_1.7.3-4_all.deb -------------------------------------------- new Debian package, version 2.0. size 80720 bytes: control archive=1310 bytes. 900 bytes, 20 lines control 1823 bytes, 21 lines md5sums Package: libbio-tools-phylo-paml-perl Version: 1.7.3-4 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 276 Depends: perl:any, libbio-perl-perl, libbio-perl-run-perl, libio-string-perl, paml Section: science Priority: optional Homepage: https://metacpan.org/release/Bio-Tools-Phylo-PAML Description: Bioperl interface to the PAML suite This distribution provides a Perl interface to PAML, a suite of programs (baseml, codeml, evolver, and yn00) for phylogenetic analyses of DNA or protein sequences using maximum likelihood. . The Bio::Tools::Run::Phylo::PAML::* modules provide an interface to run the PAML programs while Bio::Tools::Phylo::PAML provides an interface to parse their output files. . This distribution is part of the Bioperl project. drwxr-xr-x root/root 0 2022-10-14 14:47 ./ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/bin/ -rwxr-xr-x root/root 7374 2022-10-14 14:47 ./usr/bin/bp_pairwise_kaks drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/doc/libbio-tools-phylo-paml-perl/ -rw-r--r-- root/root 471 2022-10-14 14:47 ./usr/share/doc/libbio-tools-phylo-paml-perl/changelog.Debian.gz -rw-r--r-- root/root 1249 2022-10-14 14:47 ./usr/share/doc/libbio-tools-phylo-paml-perl/copyright drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 209 2022-10-14 14:47 ./usr/share/lintian/overrides/libbio-tools-phylo-paml-perl drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/man/man1/ -rw-r--r-- root/root 2549 2022-10-14 14:47 ./usr/share/man/man1/bp_pairwise_kaks.1p.gz drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/man/man3/ -rw-r--r-- root/root 4524 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm.gz -rw-r--r-- root/root 3942 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Phylo::PAML::Codeml.3pm.gz -rw-r--r-- root/root 3826 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Phylo::PAML::ModelResult.3pm.gz -rw-r--r-- root/root 5635 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Phylo::PAML::Result.3pm.gz -rw-r--r-- root/root 5167 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Baseml.3pm.gz -rw-r--r-- root/root 6579 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Codeml.3pm.gz -rw-r--r-- root/root 4404 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Evolver.3pm.gz -rw-r--r-- root/root 3800 2022-10-14 14:47 ./usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3pm.gz drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/Bio/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/Bio/Tools/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/Bio/Tools/Phylo/ -rw-r--r-- root/root 66214 2018-07-01 12:35 ./usr/share/perl5/Bio/Tools/Phylo/PAML.pm drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/Bio/Tools/Phylo/PAML/ -rw-r--r-- root/root 8128 2018-07-01 12:35 ./usr/share/perl5/Bio/Tools/Phylo/PAML/Codeml.pm -rw-r--r-- root/root 15871 2018-07-01 12:35 ./usr/share/perl5/Bio/Tools/Phylo/PAML/ModelResult.pm -rw-r--r-- root/root 28342 2018-07-01 12:35 ./usr/share/perl5/Bio/Tools/Phylo/PAML/Result.pm drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/Bio/Tools/Run/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/Bio/Tools/Run/Phylo/ drwxr-xr-x root/root 0 2022-10-14 14:47 ./usr/share/perl5/Bio/Tools/Run/Phylo/PAML/ -rw-r--r-- root/root 20478 2018-07-01 12:35 ./usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Baseml.pm -rw-r--r-- root/root 26946 2018-07-01 12:35 ./usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Codeml.pm -rw-r--r-- root/root 21845 2022-10-14 14:47 ./usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Evolver.pm -rw-r--r-- root/root 13360 2018-07-01 12:35 ./usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Yn00.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 2052 Build-Time: 5 Distribution: lunar-proposed Host Architecture: amd64 Install-Time: 5 Job: libbio-tools-phylo-paml-perl_1.7.3-4.dsc Machine Architecture: amd64 Package: libbio-tools-phylo-paml-perl Package-Time: 11 Source-Version: 1.7.3-4 Space: 2052 Status: successful Version: 1.7.3-4 -------------------------------------------------------------------------------- Finished at 2022-11-06T03:28:50Z Build needed 00:00:11, 2052k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24611232 Scanning for processes to kill in build PACKAGEBUILD-24611232