RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-024 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:22:02 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_144 python-lpbuildd_144 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 27 Jun 01:09:39 ntpdate[1810]: adjust time server 10.211.37.1 offset -0.094504 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12812088', '/home/buildd/filecache-default/42e17d2fa25e748a1aa6eaeef2fe6722beaed5a9'] Unpacking chroot for build PACKAGEBUILD-12812088 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12812088'] Mounting chroot for build PACKAGEBUILD-12812088 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12812088', 'deb http://ftpmaster.internal/ubuntu artful main universe', 'deb http://ftpmaster.internal/ubuntu artful-security main universe', 'deb http://ftpmaster.internal/ubuntu artful-updates main universe', 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-12812088 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12812088', 'armhf'] Updating debian chroot for build PACKAGEBUILD-12812088 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf Packages [1131 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [567 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe armhf Packages [7991 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4755 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main armhf Packages [51.1 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [31.2 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe armhf Packages [118 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [72.5 kB] Fetched 15.3 MB in 8s (1705 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-7-base The following packages will be upgraded: advancecomp apt apt-transport-https bash binutils bsdutils ca-certificates cpp-6 debianutils dmsetup dpkg dpkg-dev findutils g++-6 gcc-6 gcc-6-base init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libip4tc0 libkmod2 libkrb5-26-heimdal libldap-2.4-2 libldap-common libmount1 libnpth0 libperl5.24 libpng16-16 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 systemd systemd-sysv tzdata util-linux 77 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 44.6 MB of archives. After this operation, 2170 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main armhf debianutils armhf 4.8.1.1 [84.3 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main armhf bash armhf 4.4-5ubuntu1 [527 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main armhf bsdutils armhf 1:2.29-1ubuntu3 [52.1 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main armhf dpkg armhf 1.18.24ubuntu1 [1099 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf findutils armhf 4.6.0+git+20170606-2 [277 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main armhf login armhf 1:4.2-3.2ubuntu2 [301 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main armhf util-linux armhf 2.29-1ubuntu3 [861 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main armhf mount armhf 2.29-1ubuntu3 [124 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main armhf libperl5.24 armhf 5.24.1-4ubuntu1 [2810 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main armhf perl armhf 5.24.1-4ubuntu1 [219 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main armhf perl-base armhf 5.24.1-4ubuntu1 [1237 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main armhf perl-modules-5.24 all 5.24.1-4ubuntu1 [2663 kB] Get:13 http://ftpmaster.internal/ubuntu artful-proposed/main armhf init-system-helpers all 1.48 [37.8 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main armhf gcc-7-base armhf 7.1.0-7ubuntu1 [18.6 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main armhf libgcc1 armhf 1:7.1.0-7ubuntu1 [38.5 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main armhf libstdc++6 armhf 7.1.0-7ubuntu1 [346 kB] Get:17 http://ftpmaster.internal/ubuntu artful-proposed/main armhf libapt-pkg5.0 armhf 1.4.6 [717 kB] Get:18 http://ftpmaster.internal/ubuntu artful-proposed/main armhf apt armhf 1.4.6 [1064 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main armhf libip4tc0 armhf 1.6.0+snapshot20161117-6ubuntu1 [17.8 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main armhf libapparmor1 armhf 2.11.0-2ubuntu8 [26.0 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main armhf libaudit-common all 1:2.6.6-1ubuntu2 [4626 B] Get:22 http://ftpmaster.internal/ubuntu artful/main armhf libaudit1 armhf 1:2.6.6-1ubuntu2 [34.7 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main armhf libselinux1 armhf 2.6-3build1 [59.4 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage-common all 2.6-2build1 [6738 B] Get:25 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage1 armhf 2.6-2build1 [71.1 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main armhf passwd armhf 1:4.2-3.2ubuntu2 [747 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main armhf libuuid1 armhf 2.29-1ubuntu3 [14.4 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main armhf libblkid1 armhf 2.29-1ubuntu3 [98.2 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main armhf libgcrypt20 armhf 1.7.7-2 [344 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main armhf libkmod2 armhf 24-1ubuntu1 [34.8 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main armhf libmount1 armhf 2.29-1ubuntu3 [106 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main armhf systemd armhf 233-8ubuntu1 [2253 kB] Get:33 http://ftpmaster.internal/ubuntu artful/main armhf libsystemd0 armhf 233-8ubuntu1 [190 kB] Get:34 http://ftpmaster.internal/ubuntu artful-proposed/main armhf init armhf 1.48 [5806 B] Get:35 http://ftpmaster.internal/ubuntu artful/main armhf systemd-sysv armhf 233-8ubuntu1 [12.7 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main armhf libfdisk1 armhf 2.29-1ubuntu3 [132 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main armhf libsmartcols1 armhf 2.29-1ubuntu3 [60.5 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main armhf libudev1 armhf 233-8ubuntu1 [51.7 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main armhf libdevmapper1.02.1 armhf 2:1.02.137-2ubuntu2 [125 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main armhf dmsetup armhf 2:1.02.137-2ubuntu2 [71.2 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main armhf libroken18-heimdal armhf 7.1.0+dfsg-13 [33.7 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main armhf libasn1-8-heimdal armhf 7.1.0+dfsg-13 [138 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main armhf libtasn1-6 armhf 4.12-2 [30.7 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main armhf libgnutls30 armhf 3.5.8-6ubuntu1 [617 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main armhf libheimbase1-heimdal armhf 7.1.0+dfsg-13 [23.9 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main armhf libhcrypto4-heimdal armhf 7.1.0+dfsg-13 [77.4 kB] Get:47 http://ftpmaster.internal/ubuntu artful/main armhf libwind0-heimdal armhf 7.1.0+dfsg-13 [47.3 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main armhf libhx509-5-heimdal armhf 7.1.0+dfsg-13 [88.3 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main armhf libsqlite3-0 armhf 3.16.2-5 [412 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main armhf libkrb5-26-heimdal armhf 7.1.0+dfsg-13 [168 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main armhf libheimntlm0-heimdal armhf 7.1.0+dfsg-13 [13.3 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main armhf libgssapi3-heimdal armhf 7.1.0+dfsg-13 [79.3 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-5ubuntu1 [133 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main armhf libldap-common all 2.4.44+dfsg-5ubuntu1 [17.5 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main armhf libnpth0 armhf 1.5-2 [6582 B] Get:56 http://ftpmaster.internal/ubuntu artful/main armhf libssl1.0.0 armhf 1.0.2g-1ubuntu13 [711 kB] Get:57 http://ftpmaster.internal/ubuntu artful/main armhf tzdata all 2017b-2 [203 kB] Get:58 http://ftpmaster.internal/ubuntu artful-proposed/main armhf apt-transport-https armhf 1.4.6 [30.4 kB] Get:59 http://ftpmaster.internal/ubuntu artful/main armhf openssl armhf 1.0.2g-1ubuntu13 [485 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main armhf ca-certificates all 20161130+nmu1 [186 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main armhf libpng16-16 armhf 1.6.29-3 [157 kB] Get:62 http://ftpmaster.internal/ubuntu artful/main armhf advancecomp armhf 2.0-1 [167 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main armhf binutils armhf 2.28-6ubuntu1 [2624 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main armhf libgomp1 armhf 7.1.0-7ubuntu1 [64.6 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main armhf libubsan0 armhf 7.1.0-7ubuntu1 [104 kB] Get:66 http://ftpmaster.internal/ubuntu artful/main armhf libatomic1 armhf 7.1.0-7ubuntu1 [6254 B] Get:67 http://ftpmaster.internal/ubuntu artful/main armhf libasan3 armhf 6.3.0-19ubuntu1 [292 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main armhf g++-6 armhf 6.3.0-19ubuntu1 [5925 kB] Get:69 http://ftpmaster.internal/ubuntu artful/main armhf libstdc++-6-dev armhf 6.3.0-19ubuntu1 [1481 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main armhf gcc-6 armhf 6.3.0-19ubuntu1 [5789 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main armhf libgcc-6-dev armhf 6.3.0-19ubuntu1 [549 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main armhf libcc1-0 armhf 7.1.0-7ubuntu1 [31.5 kB] Get:73 http://ftpmaster.internal/ubuntu artful/main armhf cpp-6 armhf 6.3.0-19ubuntu1 [5220 kB] Get:74 http://ftpmaster.internal/ubuntu artful/main armhf gcc-6-base armhf 6.3.0-19ubuntu1 [17.5 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main armhf dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:76 http://ftpmaster.internal/ubuntu artful/main armhf libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:77 http://ftpmaster.internal/ubuntu artful/main armhf libusb-0.1-4 armhf 2:0.1.12-31 [15.6 kB] Get:78 http://ftpmaster.internal/ubuntu artful-proposed/main armhf linux-libc-dev armhf 4.11.0-8.13 [899 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.6 MB in 1s (26.5 MB/s) (Reading database ... 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Selecting previously unselected package gcc-7-base:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12213 files and directories currently installed.) Preparing to unpack .../gcc-7-base_7.1.0-7ubuntu1_armhf.deb ... Unpacking gcc-7-base:armhf (7.1.0-7ubuntu1) ... Setting up gcc-7-base:armhf (7.1.0-7ubuntu1) ... (Reading database ... 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Unpacking libaudit-common (1:2.6.6-1ubuntu2) over (1:2.6.6-1ubuntu1) ... Setting up libaudit-common (1:2.6.6-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.6-1ubuntu2_armhf.deb ... Unpacking libaudit1:armhf (1:2.6.6-1ubuntu2) over (1:2.6.6-1ubuntu1) ... Setting up libaudit1:armhf (1:2.6.6-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libselinux1_2.6-3build1_armhf.deb ... Unpacking libselinux1:armhf (2.6-3build1) over (2.6-3) ... Setting up libselinux1:armhf (2.6-3build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2build1_all.deb ... Unpacking libsemanage-common (2.6-2build1) over (2.6-2) ... Setting up libsemanage-common (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2build1_armhf.deb ... Unpacking libsemanage1:armhf (2.6-2build1) over (2.6-2) ... Setting up libsemanage1:armhf (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.2ubuntu2_armhf.deb ... Unpacking passwd (1:4.2-3.2ubuntu2) over (1:4.2-3.2ubuntu1) ... Setting up passwd (1:4.2-3.2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libuuid1_2.29-1ubuntu3_armhf.deb ... Unpacking libuuid1:armhf (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libuuid1:armhf (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libblkid1_2.29-1ubuntu3_armhf.deb ... Unpacking libblkid1:armhf (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libblkid1:armhf (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.7-2_armhf.deb ... Unpacking libgcrypt20:armhf (1.7.7-2) over (1.7.6-1) ... Setting up libgcrypt20:armhf (1.7.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libkmod2_24-1ubuntu1_armhf.deb ... Unpacking libkmod2:armhf (24-1ubuntu1) over (22-1.1ubuntu1) ... Preparing to unpack .../libmount1_2.29-1ubuntu3_armhf.deb ... Unpacking libmount1:armhf (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libmount1:armhf (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../systemd_233-8ubuntu1_armhf.deb ... Unpacking systemd (233-8ubuntu1) over (232-21ubuntu3) ... dpkg: warning: unable to delete old directory '/etc/dbus-1/system.d': Directory not empty dpkg: warning: unable to delete old directory '/etc/dbus-1': Directory not empty Preparing to unpack .../libsystemd0_233-8ubuntu1_armhf.deb ... Unpacking libsystemd0:armhf (233-8ubuntu1) over (232-21ubuntu3) ... Setting up libsystemd0:armhf (233-8ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12246 files and directories currently installed.) Preparing to unpack .../archives/init_1.48_armhf.deb ... Unpacking init (1.48) over (1.47) ... Setting up libapparmor1:armhf (2.11.0-2ubuntu8) ... Setting up libip4tc0:armhf (1.6.0+snapshot20161117-6ubuntu1) ... Setting up libkmod2:armhf (24-1ubuntu1) ... Setting up systemd (233-8ubuntu1) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12246 files and directories currently installed.) Preparing to unpack .../systemd-sysv_233-8ubuntu1_armhf.deb ... Unpacking systemd-sysv (233-8ubuntu1) over (232-21ubuntu3) ... Preparing to unpack .../libfdisk1_2.29-1ubuntu3_armhf.deb ... Unpacking libfdisk1:armhf (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libfdisk1:armhf (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12246 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.29-1ubuntu3_armhf.deb ... Unpacking libsmartcols1:armhf (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libsmartcols1:armhf (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12246 files and directories currently installed.) Preparing to unpack .../libudev1_233-8ubuntu1_armhf.deb ... Unpacking libudev1:armhf (233-8ubuntu1) over (232-21ubuntu3) ... Setting up libudev1:armhf (233-8ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12246 files and directories currently installed.) Preparing to unpack .../00-libdevmapper1.02.1_2%3a1.02.137-2ubuntu2_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.137-2ubuntu2) over (2:1.02.136-1ubuntu5) ... Preparing to unpack .../01-dmsetup_2%3a1.02.137-2ubuntu2_armhf.deb ... Unpacking dmsetup (2:1.02.137-2ubuntu2) over (2:1.02.136-1ubuntu5) ... Preparing to unpack .../02-libroken18-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libroken18-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../03-libasn1-8-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libasn1-8-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../04-libtasn1-6_4.12-2_armhf.deb ... Unpacking libtasn1-6:armhf (4.12-2) over (4.10-1) ... Preparing to unpack .../05-libgnutls30_3.5.8-6ubuntu1_armhf.deb ... Unpacking libgnutls30:armhf (3.5.8-6ubuntu1) over (3.5.6-4ubuntu4) ... Preparing to unpack .../06-libheimbase1-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libheimbase1-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../07-libhcrypto4-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libhcrypto4-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../08-libwind0-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libwind0-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../09-libhx509-5-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libhx509-5-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../10-libsqlite3-0_3.16.2-5_armhf.deb ... Unpacking libsqlite3-0:armhf (3.16.2-5) over (3.16.2-3) ... Preparing to unpack .../11-libkrb5-26-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libkrb5-26-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../12-libheimntlm0-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libheimntlm0-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../13-libgssapi3-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libgssapi3-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../14-libldap-2.4-2_2.4.44+dfsg-5ubuntu1_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.44+dfsg-5ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../15-libldap-common_2.4.44+dfsg-5ubuntu1_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../16-libnpth0_1.5-2_armhf.deb ... Unpacking libnpth0:armhf (1.5-2) over (1.3-1) ... Preparing to unpack .../17-libssl1.0.0_1.0.2g-1ubuntu13_armhf.deb ... Unpacking libssl1.0.0:armhf (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../18-tzdata_2017b-2_all.deb ... Unpacking tzdata (2017b-2) over (2017b-1) ... Preparing to unpack .../19-apt-transport-https_1.4.6_armhf.deb ... Unpacking apt-transport-https (1.4.6) over (1.4.1ubuntu2) ... Preparing to unpack .../20-openssl_1.0.2g-1ubuntu13_armhf.deb ... Unpacking openssl (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../21-ca-certificates_20161130+nmu1_all.deb ... Unpacking ca-certificates (20161130+nmu1) over (20161130) ... Preparing to unpack .../22-libpng16-16_1.6.29-3_armhf.deb ... Unpacking libpng16-16:armhf (1.6.29-3) over (1.6.29-2) ... Preparing to unpack .../23-advancecomp_2.0-1_armhf.deb ... Unpacking advancecomp (2.0-1) over (1.20-1) ... Preparing to unpack .../24-binutils_2.28-6ubuntu1_armhf.deb ... Unpacking binutils (2.28-6ubuntu1) over (2.28-4ubuntu1) ... Preparing to unpack .../25-libgomp1_7.1.0-7ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (7.1.0-7ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../26-libubsan0_7.1.0-7ubuntu1_armhf.deb ... Unpacking libubsan0:armhf (7.1.0-7ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../27-libatomic1_7.1.0-7ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (7.1.0-7ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../28-libasan3_6.3.0-19ubuntu1_armhf.deb ... Unpacking libasan3:armhf (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../29-g++-6_6.3.0-19ubuntu1_armhf.deb ... Unpacking g++-6 (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../30-libstdc++-6-dev_6.3.0-19ubuntu1_armhf.deb ... Unpacking libstdc++-6-dev:armhf (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../31-gcc-6_6.3.0-19ubuntu1_armhf.deb ... Unpacking gcc-6 (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../32-libgcc-6-dev_6.3.0-19ubuntu1_armhf.deb ... Unpacking libgcc-6-dev:armhf (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../33-libcc1-0_7.1.0-7ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (7.1.0-7ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../34-cpp-6_6.3.0-19ubuntu1_armhf.deb ... Unpacking cpp-6 (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../35-gcc-6-base_6.3.0-19ubuntu1_armhf.deb ... Unpacking gcc-6-base:armhf (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../36-dpkg-dev_1.18.24ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../37-libdpkg-perl_1.18.24ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../38-libusb-0.1-4_2%3a0.1.12-31_armhf.deb ... Unpacking libusb-0.1-4:armhf (2:0.1.12-31) over (2:0.1.12-30) ... Preparing to unpack .../39-linux-libc-dev_4.11.0-8.13_armhf.deb ... Unpacking linux-libc-dev:armhf (4.11.0-8.13) over (4.10.0-20.22) ... Setting up libnpth0:armhf (1.5-2) ... Setting up libgomp1:armhf (7.1.0-7ubuntu1) ... Setting up libatomic1:armhf (7.1.0-7ubuntu1) ... Setting up perl-modules-5.24 (5.24.1-4ubuntu1) ... Setting up libperl5.24:armhf (5.24.1-4ubuntu1) ... Setting up libcc1-0:armhf (7.1.0-7ubuntu1) ... Setting up apt-transport-https (1.4.6) ... Setting up libssl1.0.0:armhf (1.0.2g-1ubuntu13) ... Setting up libpng16-16:armhf (1.6.29-3) ... Setting up libldap-common (2.4.44+dfsg-5ubuntu1) ... Setting up tzdata (2017b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jun 27 01:10:19 UTC 2017. Universal Time is now: Tue Jun 27 01:10:19 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (233-8ubuntu1) ... Setting up libubsan0:armhf (7.1.0-7ubuntu1) ... Setting up gcc-6-base:armhf (6.3.0-19ubuntu1) ... Setting up linux-libc-dev:armhf (4.11.0-8.13) ... Setting up advancecomp (2.0-1) ... Setting up libroken18-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libdevmapper1.02.1:armhf (2:1.02.137-2ubuntu2) ... Setting up libtasn1-6:armhf (4.12-2) ... Setting up perl (5.24.1-4ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:armhf (7.1.0+dfsg-13) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:armhf (3.16.2-5) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28-6ubuntu1) ... Setting up cpp-6 (6.3.0-19ubuntu1) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:armhf (2:0.1.12-31) ... Setting up libasan3:armhf (6.3.0-19ubuntu1) ... Setting up libgcc-6-dev:armhf (6.3.0-19ubuntu1) ... Setting up libstdc++-6-dev:armhf (6.3.0-19ubuntu1) ... Setting up libwind0-heimdal:armhf (7.1.0+dfsg-13) ... Setting up init (1.48) ... Setting up libasn1-8-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libhcrypto4-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libgnutls30:armhf (3.5.8-6ubuntu1) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up libhx509-5-heimdal:armhf (7.1.0+dfsg-13) ... Setting up gcc-6 (6.3.0-19ubuntu1) ... Setting up g++-6 (6.3.0-19ubuntu1) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up libkrb5-26-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libheimntlm0-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libgssapi3-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libldap-2.4-2:armhf (2.4.44+dfsg-5ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12812088', 'armhf', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=artful-proposed', '--purge=never', '--nolog', 'libbpp-phyl-omics_2.3.1-3.dsc'] Initiating build PACKAGEBUILD-12812088 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:22:02 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-024.buildd +==============================================================================+ | libbpp-phyl-omics 2.3.1-3 (armhf) 27 Jun 2017 01:10 | +==============================================================================+ Package: libbpp-phyl-omics Version: 2.3.1-3 Source Version: 2.3.1-3 Distribution: artful-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-aUahIt/libbpp-phyl-omics-2.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-aUahIt' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12812088/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-phyl-omics_2.3.1-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-3gH_gJ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-3gH_gJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-3gH_gJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-3gH_gJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-3gH_gJ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-3gH_gJ/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (138 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-3gH_gJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12252 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-phyl-dev (>= 2.3.1), libbpp-seq-omics-dev (>= 2.3.1) Filtered Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-phyl-dev (>= 2.3.1), libbpp-seq-omics-dev (>= 2.3.1) dpkg-deb: building package 'sbuild-build-depends-libbpp-phyl-omics-dummy' in '/<>/resolver-G3rhrl/apt_archive/sbuild-build-depends-libbpp-phyl-omics-dummy.deb'. Ign:1 copy:/<>/resolver-G3rhrl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-G3rhrl/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-G3rhrl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-G3rhrl/apt_archive ./ Sources [254 B] Get:5 copy:/<>/resolver-G3rhrl/apt_archive ./ Packages [568 B] Fetched 2941 B in 0s (122 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbpp-phyl-omics build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core3 libbpp-phyl-dev libbpp-phyl11 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics2 libbpp-seq11 libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libjsoncpp1 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core3 libbpp-phyl-dev libbpp-phyl11 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics2 libbpp-seq11 libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libjsoncpp1 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-libbpp-phyl-omics-dummy 0 upgraded, 48 newly installed, 1 to remove and 0 not upgraded. Need to get 32.2 MB of archives. After this operation, 225 MB of additional disk space will be used. 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Selecting previously unselected package libbpp-seq-omics-dev. Preparing to unpack .../46-libbpp-seq-omics-dev_2.3.1-3_armhf.deb ... Unpacking libbpp-seq-omics-dev (2.3.1-3) ... Selecting previously unselected package sbuild-build-depends-libbpp-phyl-omics-dummy. Preparing to unpack .../47-sbuild-build-depends-libbpp-phyl-omics-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-libbpp-phyl-omics-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.2.1-2) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.10-5) ... Setting up libcurl3:armhf (7.52.1-5ubuntu1) ... Setting up libuv1:armhf (1.9.1-3) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:armhf (2.53.3-1) ... No schema files found: doing nothing. Setting up libbpp-core3:armhf (2.3.1-3) ... Setting up d-shlibs (0.80) ... Setting up gettext-base (0.19.8.1-2ubuntu1) ... Setting up cmake-data (3.8.0-1) ... Setting up libpipeline1:armhf (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:armhf (57.1-6) ... Setting up libbsd0:armhf (0.8.5-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-2.2ubuntu1) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:armhf (1:5.30-1) ... Setting up librhash0 (1.3.4-1) ... Setting up libcroco3:armhf (0.6.11-3) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up liblzo2-2:armhf (2.08-1.2) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up libbpp-seq11:armhf (2.3.1-3) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up libarchive13:armhf (3.2.2-2) ... Setting up libbpp-phyl11:armhf (2.3.1-4) ... Setting up libbpp-core-dev (2.3.1-3) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function/Operators.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Phyl.all -- Creating generic include file: /usr/include/Bpp/Phyl/App.all -- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all -- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all -- Creating generic include file: /usr/include/Bpp/Phyl/Io.all -- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all -- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/RateDistribution.all -- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all -- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Bed.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gff.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gtf.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Seq/Io/Maf.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up libbpp-seq-omics2:armhf (2.3.1-3) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.8.0-1) ... Setting up libtool (2.4.6-2) ... Setting up libbpp-seq-dev (2.3.1-3) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function/Operators.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Phyl.all -- Creating generic include file: /usr/include/Bpp/Phyl/App.all -- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all -- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all -- Creating generic include file: /usr/include/Bpp/Phyl/Io.all -- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all -- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/RateDistribution.all -- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all -- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Bed.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gff.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gtf.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Seq/Io/Maf.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up po-debconf (1.0.20) ... Setting up libbpp-phyl-dev (2.3.1-4) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function/Operators.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Phyl.all -- Creating generic include file: /usr/include/Bpp/Phyl/App.all -- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all -- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all -- Creating generic include file: /usr/include/Bpp/Phyl/Io.all -- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all -- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/RateDistribution.all -- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all -- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Bed.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gff.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gtf.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Seq/Io/Maf.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up libbpp-seq-omics-dev (2.3.1-3) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function/Operators.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Phyl.all -- Creating generic include file: /usr/include/Bpp/Phyl/App.all -- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all -- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all -- Creating generic include file: /usr/include/Bpp/Phyl/Io.all -- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all -- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/RateDistribution.all -- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all -- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Bed.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gff.all -- Creating generic include file: /usr/include/Bpp/Seq/Feature/Gtf.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Seq/Io/Maf.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up dh-autoreconf (14) ... Setting up debhelper (10.4ubuntu3) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up sbuild-build-depends-libbpp-phyl-omics-dummy (0.invalid.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17009 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-81-generic arm64 (armv7l) Toolchain package versions: binutils_2.28-6ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.3.0-19ubuntu1 gcc-6_6.3.0-19ubuntu1 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.3.0-19ubuntu1 libstdc++6_7.1.0-7ubuntu1 linux-libc-dev_4.11.0-8.13 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.4.6 apt-transport-https_1.4.6 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu99 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28-6ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 cmake_3.8.0-1 cmake-data_3.8.0-1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu1 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libassuan0_2.4.3-2 libatomic1_7.1.0-7ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.6.6-1ubuntu2 libaudit1_1:2.6.6-1ubuntu2 libblkid1_2.29-1ubuntu3 libbpp-core-dev_2.3.1-3 libbpp-core3_2.3.1-3 libbpp-phyl-dev_2.3.1-4 libbpp-phyl11_2.3.1-4 libbpp-seq-dev_2.3.1-3 libbpp-seq-omics-dev_2.3.1-3 libbpp-seq-omics2_2.3.1-3 libbpp-seq11_2.3.1-3 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-9ubuntu2 libc-dev-bin_2.24-9ubuntu2 libc6_2.24-9ubuntu2 libc6-dev_2.24-9ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-7ubuntu1 libcomerr2_1.43.4-2 libcroco3_0.6.11-3 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3_7.52.1-5ubuntu1 libcurl3-gnutls_7.52.1-5ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libexpat1_2.2.1-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu3 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libgcc-6-dev_6.3.0-19ubuntu1 libgcc1_1:7.1.0-7ubuntu1 libgcrypt20_1.7.7-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu1 libgomp1_7.1.0-7ubuntu1 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15-2 libgssapi3-heimdal_7.1.0+dfsg-13 libhcrypto4-heimdal_7.1.0+dfsg-13 libheimbase1-heimdal_7.1.0+dfsg-13 libheimntlm0-heimdal_7.1.0+dfsg-13 libhogweed4_3.3-1 libhx509-5-heimdal_7.1.0+dfsg-13 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0+snapshot20161117-6ubuntu1 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-13 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-5ubuntu1 libldap-common_2.4.44+dfsg-5ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.5-2 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-3 libperl5.24_5.24.1-4ubuntu1 libpipeline1_1.4.1-2 libpng16-16_1.6.29-3 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libreadline7_7.0-0ubuntu2 librhash0_1.3.4-1 libroken18-heimdal_7.1.0+dfsg-13 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build1 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu3 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.3.0-19ubuntu1 libstdc++6_7.1.0-7ubuntu1 libsystemd0_233-8ubuntu1 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.1.0-7ubuntu1 libudev1_233-8ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu3 libuv1_1.9.1-3 libwind0-heimdal_7.1.0+dfsg-13 libxml2_2.9.4+dfsg1-2.2ubuntu1 linux-libc-dev_4.11.0-8.13 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu3 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.24.1-4ubuntu1 perl-base_5.24.1-4ubuntu1 perl-modules-5.24_5.24.1-4ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-phyl-omics-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 systemd_233-8ubuntu1 systemd-sysv_233-8ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2017b-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu3 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jun 26 08:21:55 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-phyl-omics_2.3.1-3.dsc dpkg-source: info: extracting libbpp-phyl-omics in libbpp-phyl-omics-2.3.1 dpkg-source: info: unpacking libbpp-phyl-omics_2.3.1.orig.tar.gz dpkg-source: info: unpacking libbpp-phyl-omics_2.3.1-3.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbpp-phyl-omics dpkg-buildpackage: info: source version 2.3.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build libbpp-phyl-omics-2.3.1 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -- The CXX compiler identification is GNU 6.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 3.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 -- includes: /usr/include -- bpp-seq 11.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 -- includes: /usr/include -- bpp-seq-omics 2.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0 -- includes: /usr/include -- bpp-phyl 11.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_build -a make -j4 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -H/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/depend make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-static.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-phyl-omics-static Scanning dependencies of target bpp-phyl-omics-shared make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/build make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp In file included from /usr/include/c++/6/map:61:0, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:45, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ will change in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/6/map:60:0, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:45, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ will change in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ In file included from /usr/include/c++/6/map:61:0, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:45, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ will change in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/6/map:60:0, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:45, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ will change in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/map:60:0, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:45, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ will change in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/map:60:0, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:45, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ will change in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ [ 85%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]’: /usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/vector:64:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 std::__uninitialized_copy_a(__x.begin(), __x.end(), ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ this->_M_impl._M_start, ~~~~~~~~~~~~~~~~~~~~~~~ _M_get_Tp_allocator()); ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator > >; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __result)); ^ In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/cpp_type_traits.h: In function ‘_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator > >]’: /usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __miter_base(_Iterator __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator > >; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __copy_move_a2(_II __first, _II __last, _OI __result) ^~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector >]’: /usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) ^~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/vector:64:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 std::__uninitialized_copy_a(__x.begin(), __x.end(), ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ this->_M_impl._M_start, ~~~~~~~~~~~~~~~~~~~~~~~ _M_get_Tp_allocator()); ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _ForwardIterator = double*; _Tp = double]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]’: /usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type ‘std::move_iterator’ will change in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:63:0, from /usr/include/Bpp/Text/TextTools.h:45, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/6/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _ForwardIterator = double*]’: /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator > >; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __result)); ^ In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/cpp_type_traits.h: In function ‘_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator > >]’: /usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __miter_base(_Iterator __it) ^~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/char_traits.h:39:0, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator > >; _OI = double*]’: /usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __copy_move_a2(_II __first, _II __last, _OI __result) ^~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, from /usr/include/c++/6/bits/char_traits.h:39, from /usr/include/c++/6/string:40, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:44, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp:40: /usr/include/c++/6/bits/stl_iterator.h: In function ‘_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector >]’: /usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ will change in GCC 7.1 __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) ^~~~~~~~~~~~ [ 95%] Linking CXX static library libbpp-phyl-omics.a cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-omics-static.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-phyl-omics.a CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o [100%] Linking CXX shared library libbpp-phyl-omics.so cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl-omics.so.2 -o libbpp-phyl-omics.so.2.0.0 CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 /usr/bin/ranlib libbpp-phyl-omics.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target bpp-phyl-omics-static cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-phyl-omics.so.2.0.0 libbpp-phyl-omics.so.2 libbpp-phyl-omics.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target bpp-phyl-omics-shared make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -H/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/depend make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/build make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'src/CMakeFiles/bpp-phyl-omics-shared.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'src/CMakeFiles/bpp-phyl-omics-static.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 75%] Built target bpp-phyl-omics-shared [100%] Built target bpp-phyl-omics-static make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.2.0.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.2 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-phyl-dev package exists. --> libbpp-seq-dev package exists. --> libbpp-seq-omics-dev package exists. set -e install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-phyl-omics2/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.2 debian/libbpp-phyl-omics2/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.2.0.0 debian/libbpp-phyl-omics2/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-phyl-omics-dev PKGSHL=libbpp-phyl-omics2 install -d -m 755 debian/libbpp-phyl-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-omics-dev/usr/include install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl-omics2/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.2.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package libbpp-phyl-omics-dev: unused substitution variable ${devlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libbpp-phyl-omics-dev (in debian/libbpp-phyl-omics-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl-omics2-dbgsym (in debian/.debhelper/libbpp-phyl-omics2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libbpp-phyl-omics2/dbgsym-root/DEBIAN/control, package libbpp-phyl-omics2-dbgsym, directory debian/.debhelper/libbpp-phyl-omics2/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-omics2-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-omics2-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-phyl-omics2/libbpp-phyl-omics2-dbgsym_2.3.1-3_armhf.deb'. Renaming libbpp-phyl-omics2-dbgsym_2.3.1-3_armhf.deb to libbpp-phyl-omics2-dbgsym_2.3.1-3_armhf.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libbpp-phyl-omics2 (in debian/libbpp-phyl-omics2); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-phyl-omics2/DEBIAN/control, package libbpp-phyl-omics2, directory debian/libbpp-phyl-omics2 INFO: pkgstripfiles: waiting for lock (libbpp-phyl-omics2) ... INFO: pkgstripfiles: waiting for lock (libbpp-phyl-omics2) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libbpp-phyl-omics2) ... pkgstripfiles: processing control file: debian/libbpp-phyl-omics-dev/DEBIAN/control, package libbpp-phyl-omics-dev, directory debian/libbpp-phyl-omics-dev Searching for duplicated docs in dependency libbpp-phyl-omics2... symlinking changelog.Debian.gz in libbpp-phyl-omics-dev to file in libbpp-phyl-omics2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-omics-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-omics-dev' in '../libbpp-phyl-omics-dev_2.3.1-3_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-omics2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-omics2' in '../libbpp-phyl-omics2_2.3.1-3_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libbpp-phyl-omics_2.3.1-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build libbpp-phyl-omics-2.3.1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170627-0112 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-phyl-omics_2.3.1-3_armhf.changes: ---------------------------------------- Format: 1.8 Date: Mon, 26 Jun 2017 10:19:51 +0200 Source: libbpp-phyl-omics Binary: libbpp-phyl-omics-dev libbpp-phyl-omics2 Architecture: armhf Version: 2.3.1-3 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbpp-phyl-omics-dev - Bio++ Phylogenetics library: genomics components (development fil libbpp-phyl-omics2 - Bio++ Phylogenetics library: genomics components Changes: libbpp-phyl-omics (2.3.1-3) unstable; urgency=medium . * cmake files belong to /usr/lib/$(DEB_HOST_MULTIARCH) * d-shlibs (>= 0.80) contains needed override * Standards-Version: 4.0.0 (no changes needed) Checksums-Sha1: 4919eca03ebed30d9f1fd6949e95871b5ac5961f 263572 libbpp-phyl-omics-dev_2.3.1-3_armhf.deb 84c06dcc99b2ffde7372417df26bbfd61519f813 32352 libbpp-phyl-omics2-dbgsym_2.3.1-3_armhf.ddeb eef968c24b5931c04b8fd8f1c356c4df0bf0b122 71452 libbpp-phyl-omics2_2.3.1-3_armhf.deb b408efa11dc347c06b612d0dd09145ea0c9c8275 6968 libbpp-phyl-omics_2.3.1-3_armhf.buildinfo Checksums-Sha256: 51bb0ff7999b2647deaed2facffe4387c643c19b078bc3990882e41018bf6f14 263572 libbpp-phyl-omics-dev_2.3.1-3_armhf.deb 325716d9b7a23ee0aa10140e050d59d8451961abf9129b4905bc2e011904cc6f 32352 libbpp-phyl-omics2-dbgsym_2.3.1-3_armhf.ddeb ba11d2b10050f1567515751bb4095fa70dcfd5d3787f9dadfdb04d9dbf744604 71452 libbpp-phyl-omics2_2.3.1-3_armhf.deb 2280964e445a320f29254b3d87173e26bb7fba8265fdf5d4280d9e37b745e470 6968 libbpp-phyl-omics_2.3.1-3_armhf.buildinfo Files: c6a889d486cdaa8fef455f5d3bbbc9d7 263572 libdevel optional libbpp-phyl-omics-dev_2.3.1-3_armhf.deb e04bd1e9832cee5b50b13cbf71e914ec 32352 debug extra libbpp-phyl-omics2-dbgsym_2.3.1-3_armhf.ddeb c8bb760253d4003dd2f6982f2ba669a5 71452 libs optional libbpp-phyl-omics2_2.3.1-3_armhf.deb 25f83a2aa4efd74fbcd584e0d8770f56 6968 science optional libbpp-phyl-omics_2.3.1-3_armhf.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-phyl-omics-dev_2.3.1-3_armhf.deb --------------------------------------- new debian package, version 2.0. size 263572 bytes: control archive=2164 bytes. 1032 bytes, 20 lines control 1696 bytes, 17 lines md5sums 1063 bytes, 57 lines * postinst #!/bin/bash 1134 bytes, 59 lines * postrm #!/bin/bash 644 bytes, 41 lines * prerm #!/bin/bash Package: libbpp-phyl-omics-dev Source: libbpp-phyl-omics Version: 2.3.1-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3625 Depends: libbpp-phyl-omics2 (= 2.3.1-3), libbpp-phyl-dev (>= 2.3.1), libbpp-seq-omics-dev (>= 2.3.1) Section: libdevel Priority: optional Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetics library: genomics components (development files) Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes dedicated to genomic phylogeny. drwxr-xr-x root/root 0 2017-06-26 08:19 ./ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/include/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/include/Bpp/Seq/Io/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/include/Bpp/Seq/Io/Maf/ -rw-r--r-- root/root 3570 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h -rw-r--r-- root/root 2951 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -rw-r--r-- root/root 3104 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -rw-r--r-- root/root 3262 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -rw-r--r-- root/root 3378 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h -rw-r--r-- root/root 3586 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -rw-r--r-- root/root 4929 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h -rw-r--r-- root/root 14002 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h -rw-r--r-- root/root 3593 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h -rw-r--r-- root/root 3722 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -rw-r--r-- root/root 3895 2017-06-08 18:24 ./usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/lib/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/cmake/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/ -rw-r--r-- root/root 1607 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config-version.cmake -rw-r--r-- root/root 2379 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config.cmake -rw-r--r-- root/root 1676 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake -rw-r--r-- root/root 4005 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -rw-r--r-- root/root 3618470 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a lrwxrwxrwx root/root 0 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so -> libbpp-phyl-omics.so.2 drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/share/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/share/doc/libbpp-phyl-omics-dev/ lrwxrwxrwx root/root 0 2017-06-26 08:19 ./usr/share/doc/libbpp-phyl-omics-dev/changelog.Debian.gz -> ../libbpp-phyl-omics2/changelog.Debian.gz -rw-r--r-- root/root 3122 2017-06-26 08:19 ./usr/share/doc/libbpp-phyl-omics-dev/copyright libbpp-phyl-omics2_2.3.1-3_armhf.deb ------------------------------------ new debian package, version 2.0. size 71452 bytes: control archive=972 bytes. 1010 bytes, 20 lines control 253 bytes, 3 lines md5sums 39 bytes, 1 lines shlibs 60 bytes, 2 lines triggers Package: libbpp-phyl-omics2 Source: libbpp-phyl-omics Version: 2.3.1-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 326 Depends: libbpp-core3, libbpp-phyl11, libbpp-seq-omics2, libbpp-seq11, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2) Section: libs Priority: optional Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetics library: genomics components Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the dynamic library of the Bio++ classes dedicated to genomic phylogeny. drwxr-xr-x root/root 0 2017-06-26 08:19 ./ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/lib/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.2 -> libbpp-phyl-omics.so.2.0.0 -rw-r--r-- root/root 316876 2017-06-26 08:19 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.2.0.0 drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/share/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-26 08:19 ./usr/share/doc/libbpp-phyl-omics2/ -rw-r--r-- root/root 773 2017-06-26 08:19 ./usr/share/doc/libbpp-phyl-omics2/changelog.Debian.gz -rw-r--r-- root/root 3122 2017-06-26 08:19 ./usr/share/doc/libbpp-phyl-omics2/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 16172 Build-Time: 63 Distribution: artful-proposed Host Architecture: armhf Install-Time: 33 Job: libbpp-phyl-omics_2.3.1-3.dsc Machine Architecture: arm64 Package: libbpp-phyl-omics Package-Time: 98 Source-Version: 2.3.1-3 Space: 16172 Status: successful Version: 2.3.1-3 -------------------------------------------------------------------------------- Finished at 20170627-0112 Build needed 00:01:38, 16172k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12812088'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12812088/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12812088'] Unmounting chroot for build PACKAGEBUILD-12812088... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12812088'] Removing build PACKAGEBUILD-12812088