https://launchpad.net/ubuntu/+source/libbpp-phyl-omics/2.4.1-5.1/+build/27853674 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-arm64-014 5.4.0-172-generic #190-Ubuntu SMP Fri Feb 2 23:29:27 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 29 Feb 17:21:37 ntpdate[1841]: adjust time server 10.211.37.1 offset -0.007238 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27853674 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-27853674 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27853674 Starting target for build PACKAGEBUILD-27853674 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27853674 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27853674 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27853674 Updating target for build PACKAGEBUILD-27853674 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1349 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [519 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6033 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [141 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [97.4 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [835 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [502 kB] Fetched 24.4 MB in 4s (6690 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.36 libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* usrmerge* The following NEW packages will be installed: cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-14-base gcc-arm-linux-gnueabihf libapt-pkg6.0t64 libperl5.38 libunistring5 perl-modules-5.38 The following packages have been kept back: libnsl-dev libnsl2 libtirpc-dev libtirpc3 optipng The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 151 upgraded, 11 newly installed, 2 to remove and 5 not upgraded. Need to get 95.0 MB of archives. After this operation, 45.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.39-0ubuntu2 [1352 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.39-0ubuntu2 [19.1 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt1 armhf 1:4.4.36-4 [104 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-libc-dev armhf 6.8.0-11.11 [1553 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libnss-nisplus armhf 1.3-0ubuntu7 [20.1 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libc6 armhf 2.39-0ubuntu2 [2827 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libc-bin armhf 2.39-0ubuntu2 [530 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240221-2.1ubuntu1 [46.9 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240221-2.1ubuntu1 [41.5 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main armhf base-files armhf 13ubuntu7 [73.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main armhf debianutils armhf 5.16 [93.1 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf bash armhf 5.2.21-2ubuntu2 [666 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main armhf bsdutils armhf 1:2.39.3-6ubuntu2 [99.8 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu2 [1280 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main armhf bzip2 armhf 1.0.8-5ubuntu1 [33.5 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libbz2-1.0 armhf 1.0.8-5ubuntu1 [31.2 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error-l10n all 1.47-3build1 [8024 B] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error0 armhf 1.47-3build1 [61.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libgcrypt20 armhf 1.10.3-2 [454 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240221-2.1ubuntu1 [714 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf libacl1 armhf 2.3.2-1 [15.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libapparmor1 armhf 4.0.0~alpha4-0ubuntu1 [44.4 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libcap-ng0 armhf 0.8.4-2 [13.4 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libblkid1 armhf 2.39.3-6ubuntu2 [159 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libcap2 armhf 1:2.66-5ubuntu1 [25.8 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libssl3 armhf 3.0.10-1ubuntu4 [1553 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libzstd1 armhf 1.5.5+dfsg2-2 [265 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libkmod2 armhf 30+20230601-2ubuntu1 [43.9 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-8-0 armhf 10.42-4ubuntu1 [198 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2build2 [70.4 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libmount1 armhf 2.39.3-6ubuntu2 [170 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3ubuntu1 [3110 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libperl5.38 armhf 5.38.2-3 [4105 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf perl armhf 5.38.2-3 [231 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf perl-base armhf 5.38.2-3 [1670 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf liblocale-gettext-perl armhf 1.07-6build1 [14.8 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf libtext-iconv-perl armhf 1.7-8build1 [12.6 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libtext-charwidth-perl armhf 0.04-11build1 [8894 B] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libdb5.3 armhf 5.3.28+dfsg2-4 [652 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm6 armhf 1.23-5 [29.8 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm-compat4 armhf 1.23-5 [5970 B] Get:46 http://ftpmaster.internal/ubuntu noble/main armhf zlib1g armhf 1:1.3.dfsg-3ubuntu1 [50.6 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main armhf debconf-i18n all 1.5.86 [205 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main armhf debconf all 1.5.86 [124 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf libpam0g armhf 1.5.2-9.1ubuntu3 [60.4 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main armhf libseccomp2 armhf 2.5.5-1ubuntu1 [49.4 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu1 [11.9 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu1 [103 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu1 [3502 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu1 [2009 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libargon2-1 armhf 0~20190702+dfsg-4 [22.3 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu1 [166 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu1 [135 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libuuid1 armhf 2.39.3-6ubuntu2 [33.7 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu1 [238 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libfdisk1 armhf 2.39.3-6ubuntu2 [195 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main armhf mount armhf 2.39.3-6ubuntu2 [132 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu1 [410 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf libxxhash0 armhf 0.8.2-2 [31.3 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.12+nmu1 [986 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.12+nmu1 [1367 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.12+nmu1 [210 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libdebconfclient0 armhf 0.271ubuntu1 [10.8 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main armhf base-passwd armhf 3.6.3 [51.0 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main armhf gpgv armhf 2.4.4-2ubuntu7 [223 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main armhf libffi8 armhf 3.4.6-1 [21.0 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main armhf libp11-kit0 armhf 0.25.3-4ubuntu1 [258 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main armhf libunistring5 armhf 1.1-2 [512 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libidn2-0 armhf 2.3.7-2 [96.1 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main armhf libgnutls30 armhf 3.8.3-1ubuntu1 [939 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main armhf tar armhf 1.35+dfsg-3 [236 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.5ubuntu2 [1231 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main armhf dash armhf 0.5.12-6ubuntu4 [80.7 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main armhf diffutils armhf 1:3.10-1 [167 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main armhf grep armhf 3.11-4 [166 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main armhf gzip armhf 1.12-1ubuntu2 [95.8 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main armhf hostname armhf 3.23+nmu2ubuntu1 [10.3 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main armhf login armhf 1:4.13+dfsg1-4ubuntu1 [200 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-bin armhf 6.4+20240113-1ubuntu1 [178 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main armhf sed armhf 4.9-2 [198 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf util-linux armhf 2.39.3-6ubuntu2 [1214 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main armhf sysvinit-utils armhf 3.08-6ubuntu2 [33.7 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules-bin armhf 1.5.2-9.1ubuntu3 [43.5 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules armhf 1.5.2-9.1ubuntu3 [265 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main armhf init armhf 1.66ubuntu1 [6186 B] Get:93 http://ftpmaster.internal/ubuntu noble/main armhf libsmartcols1 armhf 2.39.3-6ubuntu2 [116 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main armhf uuid-runtime armhf 2.39.3-6ubuntu2 [40.7 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libattr1 armhf 1:2.5.2-1 [10.3 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libmd0 armhf 1.1.0-2 [23.1 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main armhf libpam-runtime all 1.5.2-9.1ubuntu3 [40.4 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build3 [10.1 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main armhf libsepol2 armhf 3.5-2 [262 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build3 [84.3 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main armhf libncursesw6 armhf 6.4+20240113-1ubuntu1 [118 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main armhf libtinfo6 armhf 6.4+20240113-1ubuntu1 [90.5 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf passwd armhf 1:4.13+dfsg1-4ubuntu1 [817 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13 armhf 13.2.0-16ubuntu1 [14.5 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13 armhf 13.2.0-16ubuntu1 [445 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13 armhf 13.2.0-16ubuntu1 [1032 B] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-16ubuntu1 [8755 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcc1-0 armhf 14-20240221-2.1ubuntu1 [39.3 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main armhf libctf0 armhf 2.42-3ubuntu1 [87.6 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf libctf-nobfd0 armhf 2.42-3ubuntu1 [88.0 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf libsframe1 armhf 2.42-3ubuntu1 [13.2 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main armhf binutils-arm-linux-gnueabihf armhf 2.42-3ubuntu1 [2925 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main armhf libbinutils armhf 2.42-3ubuntu1 [464 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf binutils armhf 2.42-3ubuntu1 [3078 B] Get:115 http://ftpmaster.internal/ubuntu noble/main armhf binutils-common armhf 2.42-3ubuntu1 [217 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++-13-dev armhf 13.2.0-16ubuntu1 [2402 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240221-2.1ubuntu1 [125 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libatomic1 armhf 14-20240221-2.1ubuntu1 [7818 B] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libasan8 armhf 14-20240221-2.1ubuntu1 [2940 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libubsan1 armhf 14-20240221-2.1ubuntu1 [1152 kB] Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-13-dev armhf 13.2.0-16ubuntu1 [900 kB] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-16ubuntu1 [16.8 MB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-16ubuntu1 [9935 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-16ubuntu1 [47.2 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu1 [48.8 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main armhf mawk armhf 1.3.4.20240123-1 [115 kB] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf procps armhf 2:4.0.4-4ubuntu1 [700 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf sensible-utils all 0.0.22 [22.5 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main armhf openssl armhf 3.0.10-1ubuntu4 [973 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates all 20240203 [159 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main armhf krb5-locales all 1.20.1-5build1 [13.7 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main armhf libgssapi-krb5-2 armhf 1.20.1-5build1 [118 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5-3 armhf 1.20.1-5build1 [320 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libk5crypto3 armhf 1.20.1-5build1 [78.6 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5support0 armhf 1.20.1-5build1 [31.3 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf libkeyutils1 armhf 1.6.3-3 [8120 B] Get:137 http://ftpmaster.internal/ubuntu noble/main armhf libip4tc2 armhf 1.8.10-3ubuntu1 [21.2 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main armhf readline-common all 8.2-3 [56.2 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main armhf libreadline8 armhf 8.2-3 [129 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main armhf libsqlite3-0 armhf 3.45.1-1 [590 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf tzdata all 2024a-1ubuntu1 [273 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main armhf bash-completion all 1:2.11-8 [180 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main armhf bsdextrautils armhf 2.39.3-6ubuntu2 [77.7 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main armhf libpng16-16 armhf 1.6.43-1 [166 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main armhf psmisc armhf 23.6-2 [176 kB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] Get:149 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] Get:150 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] Get:152 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] Get:153 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.5ubuntu2 [1061 kB] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.5ubuntu2 [269 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main armhf lto-disabled-list all 47 [12.4 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main armhf libfakeroot armhf 1.33-1 [28.7 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main armhf fakeroot armhf 1.33-1 [68.6 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main armhf pinentry-curses armhf 1.2.1-3ubuntu1 [36.4 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main armhf gpg armhf 2.4.4-2ubuntu7 [523 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main armhf gpgconf armhf 2.4.4-2ubuntu7 [115 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main armhf gpg-agent armhf 2.4.4-2ubuntu7 [236 kB] Preconfiguring packages ... 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Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27853674 armhf noble-proposed -c chroot:build-PACKAGEBUILD-27853674 --arch=armhf --dist=noble-proposed --nolog libbpp-phyl-omics_2.4.1-5.1.dsc Initiating build PACKAGEBUILD-27853674 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-172-generic #190-Ubuntu SMP Fri Feb 2 23:29:27 UTC 2024 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos03-arm64-014.buildd +==============================================================================+ | libbpp-phyl-omics 2.4.1-5.1 (armhf) Thu, 29 Feb 2024 17:22:21 +0000 | +==============================================================================+ Package: libbpp-phyl-omics Version: 2.4.1-5.1 Source Version: 2.4.1-5.1 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27853674/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-skL8jB/resolver-ZhIlVB' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-phyl-omics_2.4.1-5.1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-skL8jB/libbpp-phyl-omics-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-skL8jB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-phyl-dev, libbpp-seq-omics-dev, build-essential, fakeroot Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-phyl-dev, libbpp-seq-omics-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [421 B] Get:5 copy:/<>/apt_archive ./ Packages [503 B] Fetched 1881 B in 0s (43.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu74 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu74 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 56 newly installed, 0 to remove and 5 not upgraded. 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Setting up file (1:5.45-2) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-4) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:armhf (1.48.0-1) ... Setting up libbpp-core4:armhf (2.4.1-11) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up libjsoncpp25:armhf (1.9.5-6) ... Setting up d-shlibs (0.106) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-4) ... Setting up libssh-4:armhf (0.10.6-2) ... Setting up autoconf (2.71-3) ... Setting up libicu74:armhf (74.2-1ubuntu1) ... Setting up librhash0:armhf (1.4.3-3) ... Setting up libuchardet0:armhf (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up cmake-data (3.28.3-1) ... Setting up libbpp-seq12:armhf (2.4.1-10) ... Setting up libelf1:armhf (0.190-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu1) ... Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu1) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libbpp-phyl12:armhf (2.4.1-9ubuntu1) ... Setting up libdw1:armhf (0.190-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libbpp-seq-omics3:armhf (2.4.1-10) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:armhf (3.7.2-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-core-dev:armhf (2.4.1-11) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:armhf (8.5.0-2ubuntu2) ... Setting up libbpp-seq-dev:armhf (2.4.1-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libbpp-phyl-dev:armhf (2.4.1-9ubuntu1) ... Setting up libbpp-seq-omics-dev:armhf (2.4.1-10) ... Setting up cmake (3.28.3-1) ... Setting up debhelper (13.14.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-0ubuntu2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-172-generic #190-Ubuntu SMP Fri Feb 2 23:29:27 UTC 2024 arm64 (armv7l) Toolchain package versions: binutils_2.42-3ubuntu1 dpkg-dev_1.22.5ubuntu2 g++-13_13.2.0-16ubuntu1 gcc-13_13.2.0-16ubuntu1 libc6-dev_2.39-0ubuntu2 libstdc++-13-dev_13.2.0-16ubuntu1 libstdc++6_14-20240221-2.1ubuntu1 linux-libc-dev_6.8.0-11.11 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.12+nmu1 apt-utils_2.7.12+nmu1 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu7 base-passwd_3.6.3 bash_5.2.21-2ubuntu2 bash-completion_1:2.11-8 binutils_2.42-3ubuntu1 binutils-arm-linux-gnueabihf_2.42-3ubuntu1 binutils-common_2.42-3ubuntu1 bsdextrautils_2.39.3-6ubuntu2 bsdutils_1:2.39.3-6ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5ubuntu1 ca-certificates_20240203 cmake_3.28.3-1 cmake-data_3.28.3-1 coreutils_9.4-3ubuntu2 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-16ubuntu1 cpp-13-arm-linux-gnueabihf_13.2.0-16ubuntu1 cpp-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 d-shlibs_0.106 dash_0.5.12-6ubuntu4 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu1 debianutils_5.16 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.5ubuntu2 dpkg-dev_1.22.5ubuntu2 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-16ubuntu1 g++-13-arm-linux-gnueabihf_13.2.0-16ubuntu1 g++-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 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libtinfo6_6.4+20240113-1ubuntu1 libtirpc-common_1.3.4+ds-1.1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_14-20240221-2.1ubuntu1 libuchardet0_0.0.8-1 libudev1_255.4-1ubuntu1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6ubuntu2 libuv1_1.48.0-1 libxml2_2.9.14+dfsg-1.3ubuntu1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.0-11.11 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-4ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_47 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 mount_2.39.3-6ubuntu2 ncurses-base_6.4+20240113-1ubuntu1 ncurses-bin_6.4+20240113-1ubuntu1 openssl_3.0.10-1ubuntu4 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-4ubuntu1 patch_2.7.6-7build2 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu1 psmisc_23.6-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 systemd_255.4-1ubuntu1 systemd-dev_255.4-1ubuntu1 systemd-sysv_255.4-1ubuntu1 sysvinit-utils_3.08-6ubuntu2 tar_1.35+dfsg-3 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-6ubuntu2 uuid-runtime_2.39.3-6ubuntu2 xz-utils_5.6.0-0.2 zlib1g_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-phyl-omics Binary: libbpp-phyl-omics-dev, libbpp-phyl-omics3t64 Architecture: any Version: 2.4.1-5.1 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-phyl-omics Vcs-Git: https://salsa.debian.org/med-team/libbpp-phyl-omics.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-phyl-dev, libbpp-seq-omics-dev Package-List: libbpp-phyl-omics-dev deb libdevel optional arch=any libbpp-phyl-omics3t64 deb libs optional arch=any Checksums-Sha1: b3132c35963eec7890514c1766b6c13f5c661a31 48482 libbpp-phyl-omics_2.4.1.orig.tar.gz 422fe1145f71c473f792edbde75e0deb36e2e8be 14164 libbpp-phyl-omics_2.4.1-5.1.debian.tar.xz Checksums-Sha256: fb0908422e59c71065db874e68d5c71acddf66d8a51776f7e04a5f8d5f0f6577 48482 libbpp-phyl-omics_2.4.1.orig.tar.gz 5a4ac712b7fbbee510c912f15e97e8b0aafc0c35923a7638a8583c424a03a7fb 14164 libbpp-phyl-omics_2.4.1-5.1.debian.tar.xz Files: 7c1c1d06e0c0ff61ddecc7fcc4064f51 48482 libbpp-phyl-omics_2.4.1.orig.tar.gz 46711fa5695d3a1f5fca2d13de926123 14164 libbpp-phyl-omics_2.4.1-5.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-phyl-omics_2.4.1-5.1.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-phyl-omics in /<> dpkg-source: info: unpacking libbpp-phyl-omics_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-phyl-omics_2.4.1-5.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27853674 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27853674 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27853674 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbpp-phyl-omics dpkg-buildpackage: info: source version 2.4.1-5.1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean debian/rules:41: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh clean dh_clean debian/rules binary-arch debian/rules:41: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/depend make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-shared.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/build make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 5%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /usr/include/Bpp/Phyl/TreeTemplate.h:351:69: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 95%] Linking CXX shared library libbpp-phyl-omics.so cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libbpp-phyl-omics-2.4.1-5.1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl-omics.so.3 -o libbpp-phyl-omics.so.3.0.0 "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o" /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-phyl-omics.so.3.0.0 libbpp-phyl-omics.so.3 libbpp-phyl-omics.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 95%] Built target bpp-phyl-omics-shared [100%] Linking CXX static library libbpp-phyl-omics.a cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-omics-static.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-phyl-omics.a "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o" /usr/bin/ranlib libbpp-phyl-omics.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target bpp-phyl-omics-static make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' debian/rules:41: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-phyl-dev package exists. --> libbpp-seq-dev package exists. --> libbpp-seq-omics-dev package exists. set -e install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-phyl-omics3t64/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3 debian/libbpp-phyl-omics3t64/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 debian/libbpp-phyl-omics3t64/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-phyl-omics-dev PKGSHL=libbpp-phyl-omics3t64 install -d -m 755 debian/libbpp-phyl-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-omics-dev/usr/include install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 08d1ea090a5e934a9cb3709d5cc51692c6a03152 debian/rules override_dh_makeshlibs make[1]: Entering directory '/<>' debian/rules:41: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh_makeshlibs 2>&1 | tee > ../dh_makeshlibs.diff make[1]: Leaving directory '/<>' dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl-omics3t64/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Provides field of package libbpp-phyl-omics3t64: substitution variable ${t64:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package libbpp-phyl-omics3t64: substitution variable ${t64:Provides} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libbpp-phyl-omics-dev (in debian/libbpp-phyl-omics-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl-omics3t64 (in debian/libbpp-phyl-omics3t64); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl-omics3t64-dbgsym (in debian/.debhelper/libbpp-phyl-omics3t64/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-phyl-omics-dev/DEBIAN/control, package libbpp-phyl-omics-dev, directory debian/libbpp-phyl-omics-dev pkgstripfiles: processing control file: debian/.debhelper/libbpp-phyl-omics3t64/dbgsym-root/DEBIAN/control, package libbpp-phyl-omics3t64-dbgsym, directory debian/.debhelper/libbpp-phyl-omics3t64/dbgsym-root Searching for duplicated docs in dependency libbpp-phyl-omics3t64... dpkg-deb: building package 'libbpp-phyl-omics3t64-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-phyl-omics3t64/libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.deb'. symlinking changelog.Debian.gz in libbpp-phyl-omics-dev to file in libbpp-phyl-omics3t64 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-omics-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-omics-dev' in '../libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb'. Renaming libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.deb to libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-phyl-omics3t64/DEBIAN/control, package libbpp-phyl-omics3t64, directory debian/libbpp-phyl-omics3t64 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-omics3t64 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-omics3t64' in '../libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb'. dpkg-genbuildinfo --build=any -O../libbpp-phyl-omics_2.4.1-5.1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbpp-phyl-omics_2.4.1-5.1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-02-29T17:23:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-phyl-omics_2.4.1-5.1_armhf.changes: ------------------------------------------ Format: 1.8 Date: Thu, 29 Feb 2024 09:28:21 +0000 Source: libbpp-phyl-omics Binary: libbpp-phyl-omics-dev libbpp-phyl-omics3t64 Built-For-Profiles: noudeb Architecture: armhf Version: 2.4.1-5.1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Lukas Märdian Description: libbpp-phyl-omics-dev - Bio++ Phylogenetics library: genomics components (development fil libbpp-phyl-omics3t64 - Bio++ Phylogenetics library: genomics components Closes: 1062232 Changes: libbpp-phyl-omics (2.4.1-5.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062232 Checksums-Sha1: bc010938b258a193508bc463b616c1104201d5aa 167752 libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb c2efb2b6b40e527c87190b4791b2e42a77da233e 2642516 libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.ddeb d17b9c7c9cac085a6ea9e8563d4576515aff5e44 71528 libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb a38e1e9788e8272a89e18d820eb19a466e0cdb92 7697 libbpp-phyl-omics_2.4.1-5.1_armhf.buildinfo Checksums-Sha256: ef56743f801ff3efd876f2de385061256fd390e5f31a47962f095436d6c3a4f7 167752 libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb 82320b84dff43c32d249772d572df3c5a1b3160b07158072c6b972acdc162bc6 2642516 libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.ddeb aebb3dcc6d05489481555ac18084ebe51ee92f2de68b71fcfb7a2c263b5c68f6 71528 libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb 50a875eb92778b0632f1601ae5d74be6523cd2d2030003ab5d7583905f4f98ad 7697 libbpp-phyl-omics_2.4.1-5.1_armhf.buildinfo Files: e11eb4e20d82340ed6956ada34285990 167752 libdevel optional libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb 1b55947171b701f3f616a2025dff1142 2642516 debug optional libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.ddeb 768cfaf74708f75b0516fd86580d9d28 71528 libs optional libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb fc857ca45c4f0304d89edc3949cb193b 7697 science optional libbpp-phyl-omics_2.4.1-5.1_armhf.buildinfo /<>/libbpp-phyl-omics_2.4.1-5.1_armhf.changes.new could not be renamed to /<>/libbpp-phyl-omics_2.4.1-5.1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-phyl-omics Binary: libbpp-phyl-omics-dev libbpp-phyl-omics3t64 libbpp-phyl-omics3t64-dbgsym Architecture: armhf Version: 2.4.1-5.1 Checksums-Md5: e11eb4e20d82340ed6956ada34285990 167752 libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb 1b55947171b701f3f616a2025dff1142 2642516 libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.ddeb 768cfaf74708f75b0516fd86580d9d28 71528 libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb Checksums-Sha1: bc010938b258a193508bc463b616c1104201d5aa 167752 libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb c2efb2b6b40e527c87190b4791b2e42a77da233e 2642516 libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.ddeb d17b9c7c9cac085a6ea9e8563d4576515aff5e44 71528 libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb Checksums-Sha256: ef56743f801ff3efd876f2de385061256fd390e5f31a47962f095436d6c3a4f7 167752 libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb 82320b84dff43c32d249772d572df3c5a1b3160b07158072c6b972acdc162bc6 2642516 libbpp-phyl-omics3t64-dbgsym_2.4.1-5.1_armhf.ddeb aebb3dcc6d05489481555ac18084ebe51ee92f2de68b71fcfb7a2c263b5c68f6 71528 libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Thu, 29 Feb 2024 17:23:24 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.12+nmu1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu7), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu2), binutils (= 2.42-3ubuntu1), binutils-arm-linux-gnueabihf (= 2.42-3ubuntu1), binutils-common (= 2.42-3ubuntu1), bsdextrautils (= 2.39.3-6ubuntu2), bsdutils (= 1:2.39.3-6ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5ubuntu1), cmake (= 3.28.3-1), cmake-data (= 3.28.3-1), coreutils (= 9.4-3ubuntu2), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-16ubuntu1), cpp-13-arm-linux-gnueabihf (= 13.2.0-16ubuntu1), cpp-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), d-shlibs (= 0.106), dash (= 0.5.12-6ubuntu4), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu1), debianutils (= 5.16), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.5ubuntu2), dpkg-dev (= 1.22.5ubuntu2), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-16ubuntu1), g++-13-arm-linux-gnueabihf (= 13.2.0-16ubuntu1), g++-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-16ubuntu1), gcc-13-arm-linux-gnueabihf (= 13.2.0-16ubuntu1), gcc-13-base (= 13.2.0-16ubuntu1), gcc-14-base (= 14-20240221-2.1ubuntu1), gcc-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), gpgv (= 2.4.4-2ubuntu7), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu2), hostname (= 3.23+nmu2ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libapt-pkg6.0t64 (= 2.7.12+nmu1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.7.2-1ubuntu2), libasan8 (= 14-20240221-2.1ubuntu1), libassuan0 (= 2.5.6-1), libatomic1 (= 14-20240221-2.1ubuntu1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-3ubuntu1), libblkid1 (= 2.39.3-6ubuntu2), libbpp-core-dev (= 2.4.1-11), libbpp-core4 (= 2.4.1-11), libbpp-phyl-dev (= 2.4.1-9ubuntu1), libbpp-phyl12 (= 2.4.1-9ubuntu1), libbpp-seq-dev (= 2.4.1-10), libbpp-seq-omics-dev (= 2.4.1-10), libbpp-seq-omics3 (= 2.4.1-10), libbpp-seq12 (= 2.4.1-10), libbrotli1 (= 1.1.0-2), libbz2-1.0 (= 1.0.8-5ubuntu1), libc-bin (= 2.39-0ubuntu2), libc-dev-bin (= 2.39-0ubuntu2), libc6 (= 2.39-0ubuntu2), libc6-dev (= 2.39-0ubuntu2), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5ubuntu1), libcc1-0 (= 14-20240221-2.1ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-3ubuntu1), libctf0 (= 2.42-3ubuntu1), libcurl4 (= 8.5.0-2ubuntu2), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.14.1ubuntu1), libdpkg-perl (= 1.22.5ubuntu2), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.6.0-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-16ubuntu1), libgcc-s1 (= 14-20240221-2.1ubuntu1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.3-1ubuntu1), libgomp1 (= 14-20240221-2.1ubuntu1), libgpg-error0 (= 1.47-3build1), libgssapi-krb5-2 (= 1.20.1-5build1), libhogweed6 (= 3.9.1-2), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20240113-1ubuntu1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.59.0-1), libnpth0 (= 1.6-3build2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.25.3-4ubuntu1), libpam-modules (= 1.5.2-9.1ubuntu3), libpam-modules-bin (= 1.5.2-9.1ubuntu3), libpam-runtime (= 1.5.2-9.1ubuntu3), libpam0g (= 1.5.2-9.1ubuntu3), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38 (= 5.38.2-3), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.4-4ubuntu1), libpsl5 (= 0.21.2-1build1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.5-1ubuntu1), libselinux1 (= 3.5-2build2), libsemanage-common (= 3.5-1build3), libsemanage2 (= 3.5-1build3), libsepol2 (= 3.5-2), libsframe1 (= 2.42-3ubuntu1), libsmartcols1 (= 2.39.3-6ubuntu2), libssh-4 (= 0.10.6-2), libssl3 (= 3.0.10-1ubuntu4), libstdc++-13-dev (= 13.2.0-16ubuntu1), libstdc++6 (= 14-20240221-2.1ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20240113-1ubuntu1), libtirpc-common (= 1.3.4+ds-1.1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libubsan1 (= 14-20240221-2.1ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6ubuntu2), libuv1 (= 1.48.0-1), libxml2 (= 2.9.14+dfsg-1.3ubuntu1), libxxhash0 (= 0.8.2-2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-11.11), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), passwd (= 1:4.13+dfsg1-4ubuntu1), patch (= 2.7.6-7build2), perl (= 5.38.2-3), perl-base (= 5.38.2-3), perl-modules-5.38 (= 5.38.2-3ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), ubuntu-keyring (= 2023.11.28.1), util-linux (= 2.39.3-6ubuntu2), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1709198901" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-phyl-omics-dev_2.4.1-5.1_armhf.deb ----------------------------------------- new Debian package, version 2.0. size 167752 bytes: control archive=1378 bytes. 1067 bytes, 21 lines control 1696 bytes, 17 lines md5sums Package: libbpp-phyl-omics-dev Source: libbpp-phyl-omics Version: 2.4.1-5.1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1298 Depends: libbpp-phyl-omics3t64 (= 2.4.1-5.1), libbpp-core-dev, libbpp-phyl-dev, libbpp-seq-dev, libbpp-seq-omics-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetics library: genomics components (development files) Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes dedicated to genomic phylogeny. drwxr-xr-x root/root 0 2024-02-29 09:28 ./ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/include/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/include/Bpp/Seq/Io/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/include/Bpp/Seq/Io/Maf/ -rw-r--r-- root/root 3552 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h -rw-r--r-- root/root 2933 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -rw-r--r-- root/root 3104 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -rw-r--r-- root/root 3262 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -rw-r--r-- root/root 3360 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h -rw-r--r-- root/root 3550 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -rw-r--r-- root/root 4929 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h -rw-r--r-- root/root 14002 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h -rw-r--r-- root/root 3575 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h -rw-r--r-- root/root 3704 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -rw-r--r-- root/root 3823 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/cmake/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/ -rw-r--r-- root/root 2762 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config-version.cmake -rw-r--r-- root/root 2379 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config.cmake -rw-r--r-- root/root 1700 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake -rw-r--r-- root/root 4652 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -rw-r--r-- root/root 1219172 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a lrwxrwxrwx root/root 0 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so -> libbpp-phyl-omics.so.3 drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/doc/libbpp-phyl-omics-dev/ lrwxrwxrwx root/root 0 2024-02-29 09:28 ./usr/share/doc/libbpp-phyl-omics-dev/changelog.Debian.gz -> ../libbpp-phyl-omics3t64/changelog.Debian.gz -rw-r--r-- root/root 23177 2023-08-13 11:11 ./usr/share/doc/libbpp-phyl-omics-dev/copyright libbpp-phyl-omics3t64_2.4.1-5.1_armhf.deb ----------------------------------------- new Debian package, version 2.0. size 71528 bytes: control archive=4630 bytes. 1152 bytes, 23 lines control 343 bytes, 4 lines md5sums 53 bytes, 1 lines shlibs 33960 bytes, 534 lines symbols 75 bytes, 2 lines triggers Package: libbpp-phyl-omics3t64 Source: libbpp-phyl-omics Version: 2.4.1-5.1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 214 Depends: libbpp-core4 (>= 2.4.1), libbpp-phyl12 (>= 2.4.1), libbpp-seq-omics3 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.32), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Conflicts: libbpp-phyl-omics3 (<< 2.4.1-5.1) Replaces: libbpp-phyl-omics3 Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetics library: genomics components Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the dynamic library of the Bio++ classes dedicated to genomic phylogeny. drwxr-xr-x root/root 0 2024-02-29 09:28 ./ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3 -> libbpp-phyl-omics.so.3.0.0 -rw-r--r-- root/root 144804 2024-02-29 09:28 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/doc/libbpp-phyl-omics3t64/ -rw-r--r-- root/root 810 2024-02-29 09:28 ./usr/share/doc/libbpp-phyl-omics3t64/changelog.Debian.gz -rw-r--r-- root/root 23177 2023-08-13 11:11 ./usr/share/doc/libbpp-phyl-omics3t64/copyright drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-02-29 09:28 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 76 2024-02-29 09:27 ./usr/share/lintian/overrides/libbpp-phyl-omics3t64 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 70792 Build-Time: 50 Distribution: noble-proposed Host Architecture: armhf Install-Time: 12 Job: libbpp-phyl-omics_2.4.1-5.1.dsc Machine Architecture: arm64 Package: libbpp-phyl-omics Package-Time: 63 Source-Version: 2.4.1-5.1 Space: 70792 Status: successful Version: 2.4.1-5.1 -------------------------------------------------------------------------------- Finished at 2024-02-29T17:23:24Z Build needed 00:01:03, 70792k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27853674 Scanning for processes to kill in build PACKAGEBUILD-27853674