RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-13 3.13.0-85-generic #129-Ubuntu SMP Thu Mar 17 20:50:15 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.6 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.22. Syncing the system clock with the buildd NTP service... 2 May 03:43:41 ntpdate[1665]: adjust time server 10.211.37.1 offset 0.149010 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9677425', '/home/buildd/filecache-default/9af1b65e710cc0b334e8c9a330a1d817d2c021bb'] Unpacking chroot for build PACKAGEBUILD-9677425 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9677425'] Mounting chroot for build PACKAGEBUILD-9677425 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9677425', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9677425 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9677425', 'i386'] Updating debian chroot for build PACKAGEBUILD-9677425 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 Packages [1199 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe i386 Packages [7603 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4413 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main i386 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe i386 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main i386 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe i386 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 Packages [62.6 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [36.0 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe i386 Packages [338 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [183 kB] Fetched 14.9 MB in 3s (3955 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: apt apt-transport-https bash binutils cpp-5 debconf dmsetup dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts libapt-pkg5.0 libasan2 libatomic1 libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libgcc-5-dev libgcc1 libgcrypt20 libgomp1 libgpg-error0 libitm1 libmpx0 libperl5.22 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 linux-libc-dev make optipng perl perl-base perl-modules-5.22 policyrcd-script-zg2 sed systemd systemd-sysv sysv-rc sysvinit-utils tzdata zlib1g 64 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 95.0 MB of archives. After this operation, 185 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main i386 bash i386 4.3-14ubuntu2 [591 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 dpkg i386 1.18.4ubuntu2 [2113 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main i386 grep i386 2.25-1 [157 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main i386 hostname i386 3.17ubuntu1 [11.9 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libperl5.22 i386 5.22.2-1 [3014 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 perl i386 5.22.2-1 [237 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 perl-base i386 5.22.2-1 [1369 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 zlib1g i386 1:1.2.8.dfsg-2ubuntu5 [52.1 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main i386 init-system-helpers all 1.31ubuntu1 [31.9 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main i386 init i386 1.31ubuntu1 [4564 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 sed i386 4.2.2-7.1 [139 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main i386 gcc-6-base i386 6.1.1-0ubuntu12 [16.0 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main i386 libgcc1 i386 1:6.1.1-0ubuntu12 [46.9 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main i386 libstdc++6 i386 6.1.1-0ubuntu12 [433 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main i386 libapt-pkg5.0 i386 1.2.11 [736 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main i386 apt i386 1.2.11 [1054 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main i386 debconf all 1.5.59ubuntu1 [136 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 sysvinit-utils i386 2.88dsf-59.3ubuntu5 [22.0 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 sysv-rc all 2.88dsf-59.3ubuntu5 [18.2 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 initscripts i386 2.88dsf-59.3ubuntu5 [24.5 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main i386 libgpg-error0 i386 1.22-1 [37.3 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libselinux1 i386 2.5-2 [70.4 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main i386 libsystemd0 i386 229-5ubuntu1 [228 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main i386 systemd i386 229-5ubuntu1 [3682 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main i386 systemd-sysv i386 229-5ubuntu1 [17.7 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main i386 libudev1 i386 229-5ubuntu1 [63.5 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libdevmapper1.02.1 i386 2:1.02.122-1ubuntu1 [154 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main i386 libgcrypt20 i386 1.7.0-2 [372 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main i386 libsepol1 i386 2.5-1 [236 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libsemanage-common all 2.5-1 [6800 B] Get:32 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libsemanage1 i386 2.5-1 [88.3 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libusb-0.1-4 i386 2:0.1.12-29 [17.7 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main i386 tzdata all 2016d-2 [168 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main i386 libslang2 i386 2.3.0-2.3ubuntu1 [416 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main i386 libtasn1-6 i386 4.8-1 [44.8 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main i386 apt-transport-https i386 1.2.11 [27.6 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main i386 libpng16-16 i386 1.6.21-4 [181 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-1 [58.1 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main i386 libsasl2-modules-db i386 2.1.26.dfsg1-15 [15.4 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main i386 libsasl2-2 i386 2.1.26.dfsg1-15 [51.8 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main i386 binutils i386 2.26-8ubuntu3 [2482 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main i386 libgomp1 i386 6.1.1-0ubuntu12 [79.9 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main i386 libitm1 i386 6.1.1-0ubuntu12 [31.2 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main i386 libatomic1 i386 6.1.1-0ubuntu12 [9918 B] Get:46 http://ftpmaster.internal/ubuntu yakkety/main i386 libasan2 i386 5.3.1-16ubuntu3 [271 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main i386 libubsan0 i386 6.1.1-0ubuntu12 [120 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main i386 libcilkrts5 i386 6.1.1-0ubuntu12 [45.8 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main i386 libmpx0 i386 5.3.1-16ubuntu3 [11.1 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main i386 libquadmath0 i386 6.1.1-0ubuntu12 [204 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main i386 g++-5 i386 5.3.1-16ubuntu3 [30.4 MB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main i386 gcc-5 i386 5.3.1-16ubuntu3 [8403 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main i386 libstdc++-5-dev i386 5.3.1-16ubuntu3 [1437 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main i386 libgcc-5-dev i386 5.3.1-16ubuntu3 [2242 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main i386 libcc1-0 i386 6.1.1-0ubuntu12 [33.0 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main i386 cpp-5 i386 5.3.1-16ubuntu3 [28.4 MB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main i386 gcc-5-base i386 5.3.1-16ubuntu3 [17.4 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 dmsetup i386 2:1.02.122-1ubuntu1 [72.9 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 dpkg-dev all 1.18.4ubuntu2 [584 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libdpkg-perl all 1.18.4ubuntu2 [195 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main i386 make i386 4.1-9 [154 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/universe i386 libpng12-0 i386 1.2.54-6ubuntu1 [122 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 linux-libc-dev i386 4.4.0-22.38 [840 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main i386 optipng i386 0.7.6-1build1 [86.3 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main i386 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.0 MB in 6s (15.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../bash_4.3-14ubuntu2_i386.deb ... Unpacking bash (4.3-14ubuntu2) over (4.3-14ubuntu1) ... Setting up bash (4.3-14ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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Setting up zlib1g:i386 (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.31ubuntu1_all.deb ... Unpacking init-system-helpers (1.31ubuntu1) over (1.29ubuntu1) ... Setting up init-system-helpers (1.31ubuntu1) ... (Reading database ... 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Preparing to unpack .../dmsetup_2%3a1.02.122-1ubuntu1_i386.deb ... Unpacking dmsetup (2:1.02.122-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Preparing to unpack .../dpkg-dev_1.18.4ubuntu2_all.deb ... Unpacking dpkg-dev (1.18.4ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.4ubuntu2_all.deb ... Unpacking libdpkg-perl (1.18.4ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../archives/make_4.1-9_i386.deb ... Unpacking make (4.1-9) over (4.1-6) ... Preparing to unpack .../libpng12-0_1.2.54-6ubuntu1_i386.deb ... Unpacking libpng12-0:i386 (1.2.54-6ubuntu1) over (1.2.54-1ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.4.0-22.38_i386.deb ... Unpacking linux-libc-dev:i386 (4.4.0-22.38) over (4.4.0-21.37) ... Preparing to unpack .../optipng_0.7.6-1build1_i386.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Preparing to unpack .../policyrcd-script-zg2_0.1-3_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3) over (0.1-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up perl-modules-5.22 (5.22.2-1) ... Setting up libperl5.22:i386 (5.22.2-1) ... Setting up perl (5.22.2-1) ... Setting up sysv-rc (2.88dsf-59.3ubuntu5) ... Setting up initscripts (2.88dsf-59.3ubuntu5) ... Installing new version of config file /etc/init.d/ondemand ... Setting up tzdata (2016d-2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon May 2 03:44:20 UTC 2016. Universal Time is now: Mon May 2 03:44:20 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libslang2:i386 (2.3.0-2.3ubuntu1) ... Setting up libtasn1-6:i386 (4.8-1) ... Setting up apt-transport-https (1.2.11) ... Setting up libpng16-16:i386 (1.6.21-4) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-1) ... Setting up libsasl2-modules-db:i386 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:i386 (2.1.26.dfsg1-15) ... Setting up binutils (2.26-8ubuntu3) ... Setting up libgomp1:i386 (6.1.1-0ubuntu12) ... Setting up libitm1:i386 (6.1.1-0ubuntu12) ... Setting up libatomic1:i386 (6.1.1-0ubuntu12) ... Setting up gcc-5-base:i386 (5.3.1-16ubuntu3) ... Setting up libasan2:i386 (5.3.1-16ubuntu3) ... Setting up libubsan0:i386 (6.1.1-0ubuntu12) ... Setting up libcilkrts5:i386 (6.1.1-0ubuntu12) ... Setting up libmpx0:i386 (5.3.1-16ubuntu3) ... Setting up libquadmath0:i386 (6.1.1-0ubuntu12) ... Setting up cpp-5 (5.3.1-16ubuntu3) ... Setting up libcc1-0:i386 (6.1.1-0ubuntu12) ... Setting up libgcc-5-dev:i386 (5.3.1-16ubuntu3) ... Setting up gcc-5 (5.3.1-16ubuntu3) ... Setting up libstdc++-5-dev:i386 (5.3.1-16ubuntu3) ... Setting up g++-5 (5.3.1-16ubuntu3) ... Setting up dmsetup (2:1.02.122-1ubuntu1) ... Setting up libdpkg-perl (1.18.4ubuntu2) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.4ubuntu2) ... Setting up libpng12-0:i386 (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:i386 (4.4.0-22.38) ... Setting up optipng (0.7.6-1build1) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-5ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9677425', 'i386', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'libbpp-phyl_2.2.0-1.dsc'] Initiating build PACKAGEBUILD-9677425 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-85-generic #129-Ubuntu SMP Thu Mar 17 20:50:15 UTC 2016 i686 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-13.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ libbpp-phyl 2.2.0-1 (i386) 02 May 2016 03:44 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: libbpp-phyl Version: 2.2.0-1 Source Version: 2.2.0-1 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/libbpp-phyl-bFvfcQ/libbpp-phyl-2.2.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-bFvfcQ' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9677425/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── libbpp-phyl_2.2.0-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-QYh0Yp/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-QYh0Yp/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-QYh0Yp/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-QYh0Yp/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-QYh0Yp/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-QYh0Yp/apt_archive ./ Packages [527 B] Fetched 2854 B in 0s (233 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-QYh0Yp/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-QYh0Yp/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12158 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cmake, d-shlibs, libbpp-seq-dev (>= 2.2.0) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cmake, d-shlibs, libbpp-seq-dev (>= 2.2.0) dpkg-deb: building package 'sbuild-build-depends-libbpp-phyl-dummy' in '/«BUILDDIR»/resolver-csNoUo/apt_archive/sbuild-build-depends-libbpp-phyl-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-csNoUo/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-csNoUo/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-csNoUo/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-csNoUo/apt_archive ./ Sources [445 B] Get:5 copy:/«BUILDDIR»/resolver-csNoUo/apt_archive ./ Packages [710 B] Fetched 3274 B in 0s (0 B/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-csNoUo/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install libbpp-phyl build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasprintf0v5 libbpp-core-dev libbpp-core2v5 libbpp-seq-dev libbpp-seq9v5 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libjsoncpp1 liblzo2-2 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasprintf0v5 libbpp-core-dev libbpp-core2v5 libbpp-seq-dev libbpp-seq9v5 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libjsoncpp1 liblzo2-2 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-libbpp-phyl-dummy 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 24.3 MB of archives. After this operation, 120 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-libbpp-phyl-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-csNoUo/apt_archive ./ sbuild-build-depends-libbpp-phyl-dummy 0.invalid.0 [954 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main i386 groff-base i386 1.22.3-7 [1160 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main i386 bsdmainutils i386 9.0.6ubuntu3 [175 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 man-db i386 2.7.5-1 [865 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main i386 cmake-data all 3.5.1-1ubuntu1 [1121 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main i386 liblzo2-2 i386 2.08-1.2 [52.7 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main i386 libicu57 i386 57.1-1 [7806 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main i386 libxml2 i386 2.9.3+dfsg1-1build1 [729 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main i386 libarchive13 i386 3.1.2-11build1 [301 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main i386 libcurl3 i386 7.47.0-1ubuntu2 [207 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main i386 libexpat1 i386 2.1.1-1 [74.3 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main i386 libjsoncpp1 i386 1.7.2-1 [79.3 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main i386 cmake i386 3.5.1-1ubuntu1 [2724 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main i386 libunistring0 i386 0.9.3-5.2ubuntu1 [277 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main i386 libmagic1 i386 1:5.25-2ubuntu1 [222 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main i386 file i386 1:5.25-2ubuntu1 [21.1 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main i386 libasprintf0v5 i386 0.19.7-2ubuntu3 [6462 B] Get:19 http://ftpmaster.internal/ubuntu yakkety/main i386 gettext-base i386 0.19.7-2ubuntu3 [48.8 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main i386 libglib2.0-0 i386 2.48.0-1ubuntu4 [1183 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main i386 libsigsegv2 i386 2.10-5 [14.3 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main i386 m4 i386 1.4.17-5 [195 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 autoconf all 2.69-10 [321 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 autotools-dev all 20160430.1 [39.6 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main i386 automake all 1:1.15-4ubuntu1 [510 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main i386 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/universe i386 d-shlibs all 0.66ubuntu1 [9272 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main i386 libcroco3 i386 0.6.11-1 [87.8 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main i386 gettext i386 0.19.7-2ubuntu3 [1085 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main i386 po-debconf all 1.0.19 [234 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main i386 libarchive-zip-perl all 1.57-1 [84.0 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main i386 libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-strip-nondeterminism all 0.016-1 [4858 B] Get:36 http://ftpmaster.internal/ubuntu yakkety/main i386 libtool all 2.4.6-0.1 [193 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-autoreconf all 12 [15.8 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main i386 debhelper all 9.20160403ubuntu1 [711 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/universe i386 libbpp-core2v5 i386 2.2.0-2 [516 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/universe i386 libbpp-core-dev i386 2.2.0-2 [1152 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/universe i386 libbpp-seq9v5 i386 2.2.0-1 [473 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/universe i386 libbpp-seq-dev i386 2.2.0-1 [1119 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.3 MB in 2s (10.6 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12158 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_i386.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_i386.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../libpipeline1_1.4.1-2_i386.deb ... 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Selecting previously unselected package libbpp-seq-dev. Preparing to unpack .../libbpp-seq-dev_2.2.0-1_i386.deb ... Unpacking libbpp-seq-dev (2.2.0-1) ... Selecting previously unselected package sbuild-build-depends-libbpp-phyl-dummy. Preparing to unpack .../sbuild-build-depends-libbpp-phyl-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-libbpp-phyl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:i386 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake-data (3.5.1-1ubuntu1) ... Setting up liblzo2-2:i386 (2.08-1.2) ... Setting up libicu57:i386 (57.1-1) ... Setting up libxml2:i386 (2.9.3+dfsg1-1build1) ... Setting up libarchive13:i386 (3.1.2-11build1) ... Setting up libcurl3:i386 (7.47.0-1ubuntu2) ... Setting up libexpat1:i386 (2.1.1-1) ... Setting up libjsoncpp1:i386 (1.7.2-1) ... Setting up cmake (3.5.1-1ubuntu1) ... Setting up libunistring0:i386 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:i386 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:i386 (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:i386 (2.48.0-1ubuntu4) ... No schema files found: doing nothing. Setting up libsigsegv2:i386 (2.10-5) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-10) ... Setting up autotools-dev (20160430.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up d-shlibs (0.66ubuntu1) ... Setting up libcroco3:i386 (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up libfile-stripnondeterminism-perl (0.016-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libbpp-core2v5:i386 (2.2.0-2) ... Setting up libbpp-core-dev (2.2.0-2) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up libbpp-seq9v5:i386 (2.2.0-1) ... Setting up libbpp-seq-dev (2.2.0-1) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up sbuild-build-depends-libbpp-phyl-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.016-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-85-generic amd64 (i686) Toolchain package versions: binutils_2.26-8ubuntu3 dpkg-dev_1.18.4ubuntu2 g++-5_5.3.1-16ubuntu3 gcc-5_5.3.1-16ubuntu3 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-16ubuntu3 libstdc++6_6.1.1-0ubuntu12 linux-libc-dev_4.4.0-22.38 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.11 apt-transport-https_1.2.11 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-8ubuntu3 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 cmake_3.5.1-1ubuntu1 cmake-data_3.5.1-1ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-16ubuntu3 d-shlibs_0.66ubuntu1 dash_0.5.8-2.1ubuntu2 debconf_1.5.59ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.122-1ubuntu1 dpkg_1.18.4ubuntu2 dpkg-dev_1.18.4ubuntu2 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-16ubuntu3 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-16ubuntu3 gcc-5-base_5.3.1-16ubuntu3 gcc-6-base_6.1.1-0ubuntu12 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.31ubuntu1 init-system-helpers_1.31ubuntu1 initscripts_2.88dsf-59.3ubuntu5 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.2.11 libarchive-zip-perl_1.57-1 libarchive13_3.1.2-11build1 libasan2_5.3.1-16ubuntu3 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-0ubuntu12 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.27.1-6ubuntu3 libbpp-core-dev_2.2.0-2 libbpp-core2v5_2.2.0-2 libbpp-seq-dev_2.2.0-1 libbpp-seq9v5_2.2.0-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_6.1.1-0ubuntu12 libcilkrts5_6.1.1-0ubuntu12 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3_7.47.0-1ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.122-1ubuntu1 libdpkg-perl_1.18.4ubuntu2 libexpat1_2.1.1-1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgcc-5-dev_5.3.1-16ubuntu3 libgcc1_1:6.1.1-0ubuntu12 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1ubuntu4 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.10-4ubuntu1 libgomp1_6.1.1-0ubuntu12 libgpg-error0_1.22-1 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libitm1_6.1.1-0ubuntu12 libjsoncpp1_1.7.2-1 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libmpx0_5.3.1-16ubuntu3 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-4 libprocps4_2:3.3.10-4ubuntu2 libquadmath0_6.1.1-0ubuntu12 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.5-2 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-16ubuntu3 libstdc++6_6.1.1-0ubuntu12 libsystemd0_229-5ubuntu1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.1.1-0ubuntu12 libudev1_229-5ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-29 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.3+dfsg1-1build1 linux-libc-dev_4.4.0-22.38 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.10-4ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-phyl-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_229-5ubuntu1 systemd-sysv_229-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu5 sysvinit-utils_2.88dsf-59.3ubuntu5 tar_1.28-2.1 tzdata_2016d-2 ubuntu-keyring_2012.05.19 util-linux_2.27.1-6ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Apr 21 12:35:28 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./libbpp-phyl_2.2.0-1.dsc dpkg-source: info: extracting libbpp-phyl in libbpp-phyl-2.2.0 dpkg-source: info: unpacking libbpp-phyl_2.2.0.orig.tar.gz dpkg-source: info: unpacking libbpp-phyl_2.2.0-1.debian.tar.xz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package libbpp-phyl dpkg-buildpackage: source version 2.2.0-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build libbpp-phyl-2.2.0 dpkg-buildpackage: host architecture i386 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -- The CXX compiler identification is GNU 5.3.1 -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Library bpp-seq found here: includes : /usr/include libraries: /usr/lib/i386-linux-gnu/libbpp-seq.so -- Library bpp-core found here: includes : /usr/include libraries: /usr/lib/i386-linux-gnu/libbpp-core.so -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /«PKGBUILDDIR»/obj-i686-linux-gnu dh_auto_build -a make -j1 make[1]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' /usr/bin/cmake -H/«PKGBUILDDIR» -B/«PKGBUILDDIR»/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-i686-linux-gnu/CMakeFiles /«PKGBUILDDIR»/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f src/CMakeFiles/bppphyl-shared.dir/build.make src/CMakeFiles/bppphyl-shared.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/src /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/src /«PKGBUILDDIR»/obj-i686-linux-gnu/src/CMakeFiles/bppphyl-shared.dir/DependInfo.cmake --color= Scanning dependencies of target bppphyl-shared make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f src/CMakeFiles/bppphyl-shared.dir/build.make src/CMakeFiles/bppphyl-shared.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp [ 0%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/BipartitionList.cpp [ 0%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/BipartitionTools.cpp [ 1%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp [ 1%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Distance/BioNJ.cpp [ 1%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Distance/DistanceEstimation.cpp [ 2%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Distance/NeighborJoining.cpp [ 2%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Distance/PGMA.cpp [ 2%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp [ 3%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp [ 3%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp [ 3%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/CladogramPlot.cpp [ 4%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp [ 4%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp [ 4%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp [ 5%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp [ 5%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoTreeFactory.cpp [ 5%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/Newick.cpp [ 5%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/NexusIoTree.cpp [ 6%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/Nhx.cpp [ 6%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp [ 6%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp [ 7%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp [ 7%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp [ 7%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp [ 8%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp [ 8%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp [ 8%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp [ 9%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp [ 9%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp [ 9%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp [ 10%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp [ 10%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp [ 10%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp [ 11%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp [ 11%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp [ 11%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp [ 11%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp [ 12%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp [ 12%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp [ 12%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RASTools.cpp [ 13%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp [ 13%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp [ 13%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp [ 14%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp [ 14%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp [ 14%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp [ 15%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp [ 15%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp [ 15%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp [ 16%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp [ 16%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp [ 16%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp [ 16%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp [ 17%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp [ 17%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp [ 17%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp [ 18%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp [ 18%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/DecompositionReward.cpp [ 18%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp [ 19%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp [ 19%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/StateMap.cpp [ 19%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp [ 20%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp [ 20%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp [ 20%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp [ 21%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp [ 21%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp [ 21%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp [ 22%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp [ 22%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/RateDistributionFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/RateDistributionFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/RateDistributionFactory.cpp [ 22%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/RE08.cpp [ 22%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/SubstitutionModelFactory.cpp [ 23%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp [ 23%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp [ 23%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp [ 24%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp [ 24%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp [ 24%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/F84.cpp [ 25%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp [ 25%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp [ 25%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp [ 26%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/K80.cpp [ 26%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/L95.cpp [ 26%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp [ 27%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp [ 27%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp [ 27%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/T92.cpp [ 27%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp [ 28%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp [ 28%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp [ 28%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/DSO78.cpp [ 29%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp [ 29%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/JCprot.cpp [ 29%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/JTT92.cpp [ 30%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LG08.cpp [ 30%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/WAG01.cpp [ 30%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp [ 31%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp [ 31%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp [ 31%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp [ 32%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp [ 32%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp [ 32%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp [ 33%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/Coala.cpp [ 33%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp [ 33%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/GY94.cpp [ 33%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/MG94.cpp [ 34%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp [ 34%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp [ 34%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp [ 35%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp [ 35%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp [ 35%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp [ 36%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp [ 36%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp [ 36%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp [ 37%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp [ 37%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp [ 37%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp [ 38%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YN98.cpp [ 38%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M1.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M1.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M1.cpp [ 38%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M2.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M2.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M2.cpp [ 38%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M3.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M3.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M3.cpp [ 39%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M7.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M7.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M7.cpp [ 39%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M8.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/Codon/YNGKP_M8.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M8.cpp [ 39%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp [ 40%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp [ 40%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp [ 40%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp [ 41%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp [ 41%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/NNITopologySearch.cpp [ 41%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Node.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Node.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Node.cpp [ 42%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/OptimizationTools.cpp [ 42%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp [ 42%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp [ 43%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp [ 43%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/PatternTools.cpp [ 43%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/PhyloStatistics.cpp [ 44%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Simulation/MutationProcess.cpp [ 44%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp [ 44%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp [ 44%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/SitePatterns.cpp [ 45%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/TreeExceptions.cpp [ 45%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/TreeTemplateTools.cpp [ 45%] Building CXX object src/CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dbppphyl_shared_EXPORTS -Wall -Wshadow -Weffc++ -Wconversion -fPIC -o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/TreeTools.cpp [ 46%] Linking CXX shared library libbpp-phyl.so cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppphyl-shared.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -fPIC -Wall -Wshadow -Weffc++ -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libbpp-phyl.so.9 -o libbpp-phyl.so.9.1.3 CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o 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CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Node.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o CMakeFiles/bppphyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -lbpp-seq -lbpp-core cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-phyl.so.9.1.3 libbpp-phyl.so.9 libbpp-phyl.so make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 46%] Built target bppphyl-shared make -f src/CMakeFiles/bppphyl-static.dir/build.make src/CMakeFiles/bppphyl-static.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/src /«PKGBUILDDIR»/obj-i686-linux-gnu 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CMakeFiles/bppphyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/BipartitionList.cpp [ 47%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/BipartitionTools.cpp [ 47%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp [ 47%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ 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src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp [ 50%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/CladogramPlot.cpp [ 50%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp [ 50%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp [ 50%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp [ 51%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp [ 51%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoTreeFactory.cpp [ 51%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/Newick.cpp [ 52%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/NexusIoTree.cpp [ 52%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/Nhx.cpp [ 52%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp [ 53%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp [ 53%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp [ 53%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp [ 54%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp [ 54%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp [ 54%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp [ 55%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp [ 55%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp [ 55%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp [ 55%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp [ 56%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp [ 56%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp [ 56%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp [ 57%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp [ 57%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp [ 57%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp [ 58%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp [ 58%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp [ 58%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp [ 59%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RASTools.cpp [ 59%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp [ 59%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp [ 60%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp [ 60%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp [ 60%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp [ 61%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp [ 61%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp [ 61%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp [ 61%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp [ 62%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp [ 62%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp [ 62%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp [ 63%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp [ 63%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp [ 63%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp [ 64%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp [ 64%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp [ 64%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/DecompositionReward.cpp [ 65%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp [ 65%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp [ 65%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/StateMap.cpp [ 66%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp [ 66%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp [ 66%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp [ 66%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp [ 67%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp [ 67%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp [ 67%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp [ 68%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp [ 68%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/RateDistributionFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/RateDistributionFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/RateDistributionFactory.cpp [ 68%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/RE08.cpp [ 69%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/SubstitutionModelFactory.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/SubstitutionModelFactory.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/SubstitutionModelFactory.cpp [ 69%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp [ 69%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp [ 70%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp [ 70%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp [ 71%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/F84.cpp [ 71%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp [ 71%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp [ 72%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp [ 72%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/K80.cpp [ 72%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/L95.cpp [ 72%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp [ 73%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp [ 73%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp [ 73%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/T92.cpp [ 74%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp [ 74%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp [ 74%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp [ 75%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/DSO78.cpp [ 75%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp [ 75%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/JCprot.cpp [ 76%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/JTT92.cpp [ 76%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LG08.cpp [ 76%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/WAG01.cpp [ 77%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp [ 77%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp [ 77%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp [ 77%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp [ 78%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp [ 78%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp [ 78%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp [ 79%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/Coala.cpp [ 79%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp [ 79%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/GY94.cpp [ 80%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/MG94.cpp [ 80%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp [ 80%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp [ 81%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c 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src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp [ 82%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp [ 82%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall 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CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp [ 83%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp [ 83%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o -c 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CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/YNGKP_M2.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M2.cpp [ 85%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/YNGKP_M3.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/YNGKP_M3.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M3.cpp [ 85%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/YNGKP_M7.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/YNGKP_M7.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M7.cpp [ 85%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/YNGKP_M8.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/Codon/YNGKP_M8.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/Codon/YNGKP_M8.cpp [ 86%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp [ 86%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp [ 86%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp [ 87%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp [ 87%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp [ 87%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/NNITopologySearch.cpp [ 88%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Node.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Node.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Node.cpp [ 88%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/OptimizationTools.cpp [ 88%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp [ 88%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp [ 89%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp [ 89%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/PatternTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/PatternTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/PatternTools.cpp [ 89%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/PhyloStatistics.cpp [ 90%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Simulation/MutationProcess.cpp [ 90%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp [ 90%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp [ 91%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/SitePatterns.cpp [ 91%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/TreeExceptions.cpp [ 91%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/TreeTemplateTools.cpp [ 92%] Building CXX object src/CMakeFiles/bppphyl-static.dir/Bpp/Phyl/TreeTools.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/TreeTools.cpp.o -c /«PKGBUILDDIR»/src/Bpp/Phyl/TreeTools.cpp [ 92%] Linking CXX static library libbpp-phyl.a cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bppphyl-static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppphyl-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-phyl.a CMakeFiles/bppphyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o CMakeFiles/bppphyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o 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/«PKGBUILDDIR»/test/test_mapping_codon.cpp [ 96%] Linking CXX executable test_mapping_codon cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping_codon.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -o test_mapping_codon -rdynamic -lbpp-seq -lbpp-core -L../src -lbpp-phyl make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 96%] Built target test_mapping_codon make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test 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CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -o test_parsimony -rdynamic -lbpp-seq -lbpp-core -L../src -lbpp-phyl make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 96%] Built target test_parsimony make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_likelihood_nh.dir/DependInfo.cmake --color= Scanning dependencies of target test_likelihood_nh make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/i686-linux-gnu-g++ -I/«PKGBUILDDIR»/test/../src -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o -c /«PKGBUILDDIR»/test/test_likelihood_nh.cpp [ 97%] Linking CXX executable test_likelihood_nh cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_nh.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o -o test_likelihood_nh -rdynamic -lbpp-seq -lbpp-core -L../src -lbpp-phyl make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 97%] Built target test_likelihood_nh make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_models.dir/DependInfo.cmake --color= Scanning dependencies of target test_models make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_models.dir/test_models.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/i686-linux-gnu-g++ -I/«PKGBUILDDIR»/test/../src -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/test_models.dir/test_models.cpp.o -c /«PKGBUILDDIR»/test/test_models.cpp [ 98%] Linking CXX executable test_models cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_models.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/test_models.dir/test_models.cpp.o -o test_models -rdynamic -lbpp-seq -lbpp-core -L../src -lbpp-phyl make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 98%] Built target test_models make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake --color= Scanning dependencies of target test_likelihood_clock make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/i686-linux-gnu-g++ -I/«PKGBUILDDIR»/test/../src -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -c /«PKGBUILDDIR»/test/test_likelihood_clock.cpp [ 98%] Linking CXX executable test_likelihood_clock cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_clock.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -o test_likelihood_clock -rdynamic -lbpp-seq -lbpp-core -L../src -lbpp-phyl make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 98%] Built target test_likelihood_clock make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake --color= Scanning dependencies of target test_likelihood make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 99%] Building CXX object test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/i686-linux-gnu-g++ -I/«PKGBUILDDIR»/test/../src -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -c /«PKGBUILDDIR»/test/test_likelihood.cpp [ 99%] Linking CXX executable test_likelihood cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -o test_likelihood -rdynamic -lbpp-seq -lbpp-core -L../src -lbpp-phyl make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 99%] Built target test_likelihood make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_mapping.dir/DependInfo.cmake --color= Scanning dependencies of target test_mapping make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 99%] Building CXX object test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/i686-linux-gnu-g++ -I/«PKGBUILDDIR»/test/../src -Wall -Wshadow -Weffc++ -Wconversion -o CMakeFiles/test_mapping.dir/test_mapping.cpp.o -c /«PKGBUILDDIR»/test/test_mapping.cpp [100%] Linking CXX executable test_mapping cd /«PKGBUILDDIR»/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -Wall -Wshadow -Weffc++ -Wconversion -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/test_mapping.dir/test_mapping.cpp.o -o test_mapping -rdynamic -lbpp-seq -lbpp-core -L../src -lbpp-phyl make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [100%] Built target test_mapping make[2]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' # For the moment ignore: # 5/12 Test #5: test_parsimony ...................***Failed 0.01 sec # Newick::read: failed to read from stream # # 92% tests passed, 1 tests failed out of 12 dh_auto_test || true make -j1 test ARGS\+=-j1 make[2]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j1 Test project /«PKGBUILDDIR»/obj-i686-linux-gnu Start 1: test_tree 1/12 Test #1: test_tree ........................ Passed 26.66 sec Start 2: test_models 2/12 Test #2: test_models ...................... Passed 1.20 sec Start 3: test_detailed_simulations 3/12 Test #3: test_detailed_simulations ........ Passed 9.58 sec Start 4: test_simulations 4/12 Test #4: test_simulations ................. Passed 123.63 sec Start 5: test_parsimony 5/12 Test #5: test_parsimony ...................***Failed 0.01 sec Newick::read: failed to read from stream Start 6: test_likelihood 6/12 Test #6: test_likelihood .................. Passed 0.83 sec Start 7: test_likelihood_nh 7/12 Test #7: test_likelihood_nh ............... Passed 1088.49 sec Start 8: test_likelihood_clock 8/12 Test #8: test_likelihood_clock ............ Passed 0.68 sec Start 9: test_mapping 9/12 Test #9: test_mapping ..................... Passed 3.79 sec Start 10: test_mapping_codon 10/12 Test #10: test_mapping_codon ............... Passed 120.16 sec Start 11: test_nhx 11/12 Test #11: test_nhx ......................... Passed 0.01 sec Start 12: test_bowker 12/12 Test #12: test_bowker ...................... Passed 128.95 sec 92% tests passed, 1 tests failed out of 12 Total Test time (real) = 1504.01 sec The following tests FAILED: Errors while running CTest 5 - test_parsimony (Failed) Makefile:130: recipe for target 'test' failed make[2]: *** [test] Error 8 make[2]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' dh_auto_test: make -j1 test ARGS+=-j1 returned exit code 2 make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' /usr/bin/cmake -H/«PKGBUILDDIR» -B/«PKGBUILDDIR»/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-i686-linux-gnu/CMakeFiles /«PKGBUILDDIR»/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f src/CMakeFiles/bppphyl-shared.dir/build.make src/CMakeFiles/bppphyl-shared.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/src /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/src /«PKGBUILDDIR»/obj-i686-linux-gnu/src/CMakeFiles/bppphyl-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f src/CMakeFiles/bppphyl-shared.dir/build.make src/CMakeFiles/bppphyl-shared.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/bppphyl-shared.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 46%] Built target bppphyl-shared make -f src/CMakeFiles/bppphyl-static.dir/build.make src/CMakeFiles/bppphyl-static.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/src /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/src /«PKGBUILDDIR»/obj-i686-linux-gnu/src/CMakeFiles/bppphyl-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f src/CMakeFiles/bppphyl-static.dir/build.make src/CMakeFiles/bppphyl-static.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/bppphyl-static.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 92%] Built target bppphyl-static make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_nhx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_nhx.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 93%] Built target test_nhx make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_simulations.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_simulations.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 94%] Built target test_simulations make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_bowker.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 95%] Built target test_bowker make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_detailed_simulations.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 95%] Built target test_detailed_simulations make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_tree.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_tree.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 96%] Built target test_tree make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_mapping_codon.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 96%] Built target test_mapping_codon make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_parsimony.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 96%] Built target test_parsimony make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_likelihood_nh.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_likelihood_nh.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 97%] Built target test_likelihood_nh make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test 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'/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_likelihood_clock.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 98%] Built target test_likelihood_clock make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_likelihood.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [ 99%] Built target test_likelihood make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/depend make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' cd /«PKGBUILDDIR»/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/test /«PKGBUILDDIR»/obj-i686-linux-gnu /«PKGBUILDDIR»/obj-i686-linux-gnu/test /«PKGBUILDDIR»/obj-i686-linux-gnu/test/CMakeFiles/test_mapping.dir/DependInfo.cmake --color= make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/build make[3]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_mapping.dir/build'. make[3]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' [100%] Built target test_mapping make[2]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/lib/libbpp-phyl.a -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/lib/libbpp-phyl.so.9.1.3 -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/lib/libbpp-phyl.so.9 -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/lib/libbpp-phyl.so -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/BipartitionTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/TreeExceptions.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Parsimony -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoTree.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/Nhx.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/Newick.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/IoTreeFactory.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Io/NexusIoTree.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/TreeTemplate.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/NNISearchable.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RASTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMapping.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/Reward.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/Mapping.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionReward.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation/MutationProcess.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/TreeTemplateTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/NodeTemplate.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/NNITopologySearch.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/TopologySearch.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance/NeighborJoining.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance/PGMA.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance/BioNJ.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceMethod.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/AncestralStateReconstruction.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/BipartitionList.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/PhyloStatistics.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Node.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/OptimizationTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/PatternTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelFactory.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/StateMap.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/TS98.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistributionFactory.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/GY94.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M8.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M2.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/MG94.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M1.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YN98.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M3.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M7.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/K80.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/T92.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/F84.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/L95.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/RE08.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/G2001.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG08.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/Coala.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/WAG01.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JCprot.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/DSO78.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JTT92.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/TreeTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/SitePatterns.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/App -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h -- Installing: /«PKGBUILDDIR»/debian/tmp/usr/include/Bpp/Phyl/Tree.h -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all rm: cannot remove '/usr/include/Bpp/App.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/App.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/App.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/App.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Graph.all rm: cannot remove '/usr/include/Bpp/Graph.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graph.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graph.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graph.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graph.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graph.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all rm: cannot remove '/usr/include/Bpp/Graphics/Fig.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Fig.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Fig.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Fig.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all rm: cannot remove '/usr/include/Bpp/Graphics/Font.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Font.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Font.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all rm: cannot remove '/usr/include/Bpp/Graphics/Latex.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Latex.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Latex.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all rm: cannot remove '/usr/include/Bpp/Graphics/Molscript.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Molscript.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Graphics/R.all rm: cannot remove '/usr/include/Bpp/Graphics/R.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/R.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all rm: cannot remove '/usr/include/Bpp/Graphics/Svg.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics/Svg.all: Permission denied rm: cannot remove '/usr/include/Bpp/Graphics.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Graphics.all: Permission denied 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Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Io.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all rm: cannot remove '/usr/include/Bpp/Numeric/Function.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Function.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all rm: cannot remove '/usr/include/Bpp/Numeric/Hmm.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Hmm.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all rm: cannot remove '/usr/include/Bpp/Numeric/Matrix.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Matrix.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Matrix.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Matrix.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Matrix.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all rm: cannot remove '/usr/include/Bpp/Numeric/Prob.all': Permission denied 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/usr/include/Bpp/Numeric/Prob.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Prob.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Prob.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Prob.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Prob.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all rm: cannot remove '/usr/include/Bpp/Numeric/Random.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Random.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Random.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Random.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Numeric/Random.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: 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denied rm: cannot remove '/usr/include/Bpp/Seq.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied 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denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Seq.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Text.all rm: cannot remove '/usr/include/Bpp/Text.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Text.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Text.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Text.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Text.all: Permission denied -- Creating generic include file: /usr/include/Bpp/Utils.all rm: cannot remove '/usr/include/Bpp/Utils.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Utils.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp/Utils.all: Permission denied rm: cannot remove '/usr/include/Bpp.all': Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied /«PKGBUILDDIR»/genIncludes.sh: line 30: /usr/include/Bpp.all: Permission denied make[1]: Leaving directory '/«PKGBUILDDIR»/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/«PKGBUILDDIR»' dh_install d-shlibmove --commit \ --multiarch \ --v5 \ --devunversioned \ --override s/libbpp-core2-dev/libbpp-core-dev/ \ --override s/libbpp-seq9-dev/libbpp-seq-dev/ \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-phyl-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libbpp-phyl9v5/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/libbpp-phyl.a debian/libbpp-phyl-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/libbpp-phyl.so debian/libbpp-phyl-dev/usr/lib/i386-linux-gnu mv /«PKGBUILDDIR»/debian/tmp/usr/lib/libbpp-phyl.so.9 debian/libbpp-phyl9v5/usr/lib/i386-linux-gnu mv /«PKGBUILDDIR»/debian/tmp/usr/lib/libbpp-phyl.so.9.1.3 debian/libbpp-phyl9v5/usr/lib/i386-linux-gnu PKGDEV=libbpp-phyl-dev PKGSHL=libbpp-phyl9v5 install -d -m 755 debian/libbpp-phyl-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-dev/usr/include make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: libbpp-phyl-dev libbpp-phyl9v5 dh_strip debug symbol extraction: packages to act on: libbpp-phyl-dev libbpp-phyl9v5 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 libbpp-phyl-dev has no unstripped objects, ignoring find: ‘/«PKGBUILDDIR»/debian/libbpp-phyl-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /«PKGBUILDDIR»/debian/libbpp-phyl-dev-dbgsym and no dbgdepends, ignoring Using buildid for compat level >= 9 libbpp-phyl9v5 has no unstripped objects, ignoring find: ‘/«PKGBUILDDIR»/debian/libbpp-phyl9v5-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /«PKGBUILDDIR»/debian/libbpp-phyl9v5-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libbpp-phyl-dev: unused substitution variable ${devlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform i386: libbpp-phyl-dev libbpp-phyl9v5 dh_gencontrol debug symbol wrapper: packages to act on: libbpp-phyl-dev libbpp-phyl9v5 dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/libbpp-phyl-dev-dbgsym, skipping package libbpp-phyl-dev dh_gencontrol debug symbol wrapper: no debian/libbpp-phyl9v5-dbgsym, skipping package libbpp-phyl9v5 dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 129 INFO: pkgstriptranslations version 129 pkgstriptranslations: processing libbpp-phyl9v5 (in debian/libbpp-phyl9v5); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl-dev (in debian/libbpp-phyl-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-phyl9v5/DEBIAN/control, package libbpp-phyl9v5, directory debian/libbpp-phyl9v5 INFO: pkgstripfiles: waiting for lock (libbpp-phyl9v5) ... pkgstripfiles: processing control file: debian/libbpp-phyl-dev/DEBIAN/control, package libbpp-phyl-dev, directory debian/libbpp-phyl-dev Searching for duplicated docs in dependency libbpp-phyl9v5... symlinking changelog.Debian.gz in libbpp-phyl-dev to file in libbpp-phyl9v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-dev' in '../libbpp-phyl-dev_2.2.0-1_i386.deb'. pkgstripfiles: Truncating usr/share/doc/libbpp-phyl9v5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl9v5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl9v5' in '../libbpp-phyl9v5_2.2.0-1_i386.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../libbpp-phyl_2.2.0-1_i386.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build libbpp-phyl-2.2.0 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160502-0419 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ libbpp-phyl_2.2.0-1_i386.changes: ───────────────────────────────── Format: 1.8 Date: Thu, 21 Apr 2016 14:16:41 +0200 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl9v5 Architecture: i386 Version: 2.2.0-1 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbpp-phyl-dev - Bio++ Phylogenetic library development files libbpp-phyl9v5 - Bio++ Phylogenetic library Closes: 791094 Changes: libbpp-phyl (2.2.0-1) unstable; urgency=medium . * New upstream version * Moved packaging to Git * Better description * Team maintenance in Debian Med team * cme fix dpkg-control * Source package section: science * Add watch file * debhelper 9 * DEP5 * short dh rules file using d-shlibs * Library transition Closes: #791094 Checksums-Sha1: 568966daa5a7b47f7398f5bbd7b4d71b2b1ffea3 3786714 libbpp-phyl-dev_2.2.0-1_i386.deb 8f0a06380a1de34fb328ec230bf164846ff898b4 1373232 libbpp-phyl9v5_2.2.0-1_i386.deb Checksums-Sha256: 093dd757f4b6262e61a073ccc2decfb2d4620f42e8e988272e3af8b783892895 3786714 libbpp-phyl-dev_2.2.0-1_i386.deb 23072cf1eeee11e08da9a6b76515e98d18c805bb13a18ca6e4cd82bedf42610b 1373232 libbpp-phyl9v5_2.2.0-1_i386.deb Files: 811fce55c750deff7da33d59001451bf 3786714 libdevel optional libbpp-phyl-dev_2.2.0-1_i386.deb e3c7806b69251d2444dce771afb764c3 1373232 libs optional libbpp-phyl9v5_2.2.0-1_i386.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ libbpp-phyl-dev_2.2.0-1_i386.deb ──────────────────────────────── new debian package, version 2.0. size 3786714 bytes: control archive=7210 bytes. 944 bytes, 20 lines control 16762 bytes, 193 lines md5sums 1063 bytes, 57 lines * postinst #!/bin/bash 1134 bytes, 59 lines * postrm #!/bin/bash 644 bytes, 41 lines * prerm #!/bin/bash Package: libbpp-phyl-dev Source: libbpp-phyl Version: 2.2.0-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 53495 Depends: libbpp-phyl9v5 (= 2.2.0-1), libbpp-seq-dev (>= 2.2.0) Section: libdevel Priority: optional Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetic library development files Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files ofthe Bio++ classes for phylogenetics. drwxr-xr-x root/root 0 2016-05-02 04:18 ./ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/ -rw-r--r-- root/root 3681 2015-03-13 16:31 ./usr/include/Bpp/Phyl/AncestralStateReconstruction.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/App/ -rw-r--r-- root/root 30035 2015-03-13 16:45 ./usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h -rw-r--r-- root/root 8234 2015-03-13 16:31 ./usr/include/Bpp/Phyl/BipartitionList.h -rw-r--r-- root/root 6542 2015-03-13 16:31 ./usr/include/Bpp/Phyl/BipartitionTools.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/Distance/ -rw-r--r-- root/root 7705 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h -rw-r--r-- root/root 3916 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/BioNJ.h -rw-r--r-- root/root 19649 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/DistanceEstimation.h -rw-r--r-- root/root 3371 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/DistanceMethod.h -rw-r--r-- root/root 4014 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h -rw-r--r-- root/root 4217 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/NeighborJoining.h -rw-r--r-- root/root 4114 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/PGMA.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/Graphics/ -rw-r--r-- root/root 3320 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h -rw-r--r-- root/root 12655 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h -rw-r--r-- root/root 3441 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/CladogramPlot.h -rw-r--r-- root/root 3369 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h -rw-r--r-- root/root 11871 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/TreeDrawing.h -rw-r--r-- root/root 6675 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h -rw-r--r-- root/root 8939 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/Io/ -rw-r--r-- root/root 4510 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h -rw-r--r-- root/root 3192 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h -rw-r--r-- root/root 7402 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h -rw-r--r-- root/root 5033 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h -rw-r--r-- root/root 3614 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h -rw-r--r-- root/root 4252 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h -rw-r--r-- root/root 3269 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h -rw-r--r-- root/root 4350 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h -rw-r--r-- root/root 4601 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h -rw-r--r-- root/root 3327 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h -rw-r--r-- root/root 7646 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoTree.h -rw-r--r-- root/root 3073 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoTreeFactory.h -rw-r--r-- root/root 6013 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Io/Newick.h -rw-r--r-- root/root 4643 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/NexusIoTree.h -rw-r--r-- root/root 8577 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/Nhx.h -rw-r--r-- root/root 3104 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/Likelihood/ -rw-r--r-- root/root 5213 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h -rw-r--r-- root/root 9338 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h -rw-r--r-- root/root 10196 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 10241 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h -rw-r--r-- root/root 4829 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h -rw-r--r-- root/root 2889 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h -rw-r--r-- root/root 14645 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h -rw-r--r-- root/root 10921 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h -rw-r--r-- root/root 7438 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h -rw-r--r-- root/root 12342 2015-03-13 16:31 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./usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 6274 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h -rw-r--r-- root/root 4328 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h -rw-r--r-- root/root 2576 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RASTools.h -rw-r--r-- root/root 6494 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h -rw-r--r-- root/root 7398 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h -rw-r--r-- root/root 11173 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h -rw-r--r-- root/root 10214 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h -rw-r--r-- root/root 11557 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 3353 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h -rw-r--r-- root/root 14077 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h -rw-r--r-- root/root 4380 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h -rw-r--r-- root/root 4622 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/Mapping/ -rw-r--r-- root/root 4547 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/DecompositionReward.h -rw-r--r-- root/root 5160 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h -rw-r--r-- root/root 4603 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h -rw-r--r-- root/root 7224 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/Mapping.h -rw-r--r-- root/root 6678 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h -rw-r--r-- root/root 4222 2015-03-13 16:31 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./usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h -rw-r--r-- root/root 3734 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/Model/ -rw-r--r-- root/root 4675 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h -rw-r--r-- root/root 6966 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h -rw-r--r-- root/root 6253 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h -rw-r--r-- root/root 14120 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h -rw-r--r-- root/root 6059 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h -rw-r--r-- root/root 5050 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/include/Bpp/Phyl/Model/Codon/ -rw-r--r-- root/root 4716 2015-03-13 16:31 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2016-05-02 04:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/share/doc/libbpp-phyl-dev/ lrwxrwxrwx root/root 0 2016-05-02 04:18 ./usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz -> ../libbpp-phyl9v5/changelog.Debian.gz -rw-r--r-- root/root 3116 2016-04-21 12:17 ./usr/share/doc/libbpp-phyl-dev/copyright libbpp-phyl9v5_2.2.0-1_i386.deb ─────────────────────────────── new debian package, version 2.0. size 1373232 bytes: control archive=971 bytes. 974 bytes, 22 lines control 234 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 60 bytes, 2 lines triggers Package: libbpp-phyl9v5 Source: libbpp-phyl Version: 2.2.0-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8316 Depends: libbpp-core2v5, libbpp-seq9v5, libc6 (>= 2.4), libgcc1 (>= 1:4.0), libstdc++6 (>= 5.2) Conflicts: libbpp-phyl9 Replaces: libbpp-phyl9 Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetic library Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the Bio++ classes for phylogenetics. drwxr-xr-x root/root 0 2016-05-02 04:18 ./ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/lib/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2016-05-02 04:18 ./usr/lib/i386-linux-gnu/libbpp-phyl.so.9 -> libbpp-phyl.so.9.1.3 -rw-r--r-- root/root 8497776 2016-05-02 04:18 ./usr/lib/i386-linux-gnu/libbpp-phyl.so.9.1.3 drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/share/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-02 04:18 ./usr/share/doc/libbpp-phyl9v5/ -rw-r--r-- root/root 1051 2016-05-02 04:19 ./usr/share/doc/libbpp-phyl9v5/changelog.Debian.gz -rw-r--r-- root/root 3116 2016-04-21 12:17 ./usr/share/doc/libbpp-phyl9v5/copyright ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: i386 Build-Space: 241900 Build-Time: 2104 Distribution: yakkety-proposed Host Architecture: i386 Install-Time: 14 Job: libbpp-phyl_2.2.0-1.dsc Machine Architecture: amd64 Package: libbpp-phyl Package-Time: 2119 Source-Version: 2.2.0-1 Space: 241900 Status: successful Version: 2.2.0-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160502-0419 Build needed 00:35:19, 241900k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9677425'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9677425/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9677425'] Unmounting chroot for build PACKAGEBUILD-9677425... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9677425'] Removing build PACKAGEBUILD-9677425