https://launchpad.net/ubuntu/+source/libbpp-phyl/2.4.1-7ubuntu1/+build/24184316 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-036 5.4.0-122-generic #138-Ubuntu SMP Wed Jun 22 15:05:39 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_216~573~ubuntu20.04.1 python3-lpbuildd_216~573~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 19 Jul 17:55:42 ntpdate[1811]: adjust time server 10.211.37.1 offset 0.000454 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24184316 --image-type chroot /home/buildd/filecache-default/e7574466887b0df41a9ed814007609e88584b937 Creating target for build PACKAGEBUILD-24184316 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24184316 Starting target for build PACKAGEBUILD-24184316 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24184316 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24184316 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24184316 Updating target for build PACKAGEBUILD-24184316 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf Packages [1330 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe armhf Packages [13.3 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5764 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf Packages [92.2 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [40.1 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe armhf Packages [350 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [217 kB] Fetched 22.2 MB in 8s (2869 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libfdisk1 sgml-base util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libidn2-0 libip4tc2 libisl23 libkeyutils1 liblzma5 libmount1 libncurses6 libncursesw6 libperl5.34 libpng16-16 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.34 pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 94 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 76.6 MB of archives. After this operation, 12.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libcrypt-dev armhf 1:4.4.28-2 [122 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libcrypt1 armhf 1:4.4.28-2 [92.4 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main armhf base-files armhf 12.2ubuntu2 [73.1 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main armhf bsdutils armhf 1:2.38-4ubuntu1 [86.3 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf libzstd1 armhf 1.5.2+dfsg-1 [243 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main armhf libgpg-error0 armhf 1.45-2 [61.2 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcrypt20 armhf 1.10.1-2ubuntu1 [450 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main armhf libatomic1 armhf 12.1.0-5ubuntu1 [7662 B] Get:9 http://ftpmaster.internal/ubuntu kinetic/main armhf libubsan1 armhf 12.1.0-5ubuntu1 [950 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main armhf libgomp1 armhf 12.1.0-5ubuntu1 [109 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-12-base armhf 12.1.0-5ubuntu1 [19.3 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcc-s1 armhf 12.1.0-5ubuntu1 [41.1 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main armhf libcc1-0 armhf 12.1.0-5ubuntu1 [38.9 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main armhf libstdc++6 armhf 12.1.0-5ubuntu1 [602 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main armhf liblzma5 armhf 5.2.5-2.1 [86.4 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main armhf libblkid1 armhf 2.38-4ubuntu1 [137 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main armhf libuuid1 armhf 2.38-4ubuntu1 [22.8 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main armhf libfdisk1 armhf 2.38-4ubuntu1 [186 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main armhf systemd-sysv armhf 251.2-2ubuntu1 [11.2 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libapparmor1 armhf 3.0.4-3ubuntu1 [32.8 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main armhf libip4tc2 armhf 1.8.7-1ubuntu6 [17.5 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main armhf libselinux1 armhf 3.4-1 [69.3 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main armhf libmount1 armhf 2.38-4ubuntu1 [153 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main armhf libssl3 armhf 3.0.4-1ubuntu1 [1569 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main armhf mount armhf 2.38-4ubuntu1 [126 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main armhf libsemanage-common all 3.4-1 [9828 B] Get:27 http://ftpmaster.internal/ubuntu kinetic/main armhf libsepol2 armhf 3.4-2 [263 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main armhf libsemanage2 armhf 3.4-1 [84.8 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main armhf passwd armhf 1:4.11.1+dfsg1-2ubuntu1 [743 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main armhf adduser all 3.121ubuntu1 [150 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main armhf systemd armhf 251.2-2ubuntu1 [4625 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main armhf libsystemd0 armhf 251.2-2ubuntu1 [304 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main armhf libudev1 armhf 251.2-2ubuntu1 [74.9 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main armhf libapt-pkg6.0 armhf 2.5.1 [897 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main armhf dpkg armhf 1.21.9ubuntu1 [1291 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [79.6 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main armhf login armhf 1:4.11.1+dfsg1-2ubuntu1 [182 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main armhf ncurses-bin armhf 6.3+20220423-2 [174 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main armhf libperl5.34 armhf 5.34.0-5ubuntu1 [3963 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main armhf perl armhf 5.34.0-5ubuntu1 [231 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main armhf perl-base armhf 5.34.0-5ubuntu1 [1586 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main armhf perl-modules-5.34 all 5.34.0-5ubuntu1 [2952 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.10 [644 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main armhf libsmartcols1 armhf 2.38-4ubuntu1 [94.9 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main armhf util-linux-extra armhf 2.38-4ubuntu1 [98.7 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main armhf util-linux armhf 2.38-4ubuntu1 [1157 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main armhf init-system-helpers all 1.64 [38.7 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main armhf ncurses-base all 6.3+20220423-2 [21.2 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main armhf sgml-base all 1.30 [12.5 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libidn2-0 armhf 2.3.3-1 [92.7 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main armhf libgnutls30 armhf 3.7.6-2ubuntu1 [941 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main armhf gpgv armhf 2.2.27-3ubuntu3 [184 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main armhf apt armhf 2.5.1 [1363 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main armhf logsave armhf 1.46.5-2ubuntu2 [9340 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main armhf libext2fs2 armhf 1.46.5-2ubuntu2 [188 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main armhf e2fsprogs armhf 1.46.5-2ubuntu2 [562 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main armhf init armhf 1.64 [5536 B] Get:58 http://ftpmaster.internal/ubuntu kinetic/main armhf libcap-ng0 armhf 0.8.3-1 [13.8 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main armhf libncurses6 armhf 6.3+20220423-2 [88.3 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main armhf libncursesw6 armhf 6.3+20220423-2 [116 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main armhf libtinfo6 armhf 6.3+20220423-2 [83.6 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main armhf libcom-err2 armhf 1.46.5-2ubuntu2 [8210 B] Get:63 http://ftpmaster.internal/ubuntu kinetic/main armhf libss2 armhf 1.46.5-2ubuntu2 [10.1 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main armhf mawk armhf 1.3.4.20200120-3.1 [97.1 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main armhf libkeyutils1 armhf 1.6.1-3ubuntu1 [8722 B] Get:66 http://ftpmaster.internal/ubuntu kinetic/main armhf readline-common all 8.1.2-1.2 [53.6 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main armhf libreadline8 armhf 8.1.2-1.2 [128 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libsqlite3-0 armhf 3.39.1-1 [551 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main armhf openssl armhf 3.0.4-1ubuntu1 [1146 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main armhf libpng16-16 armhf 1.6.37-5 [167 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main armhf xz-utils armhf 5.2.5-2.1 [83.6 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main armhf libctf0 armhf 2.38.90.20220713-2ubuntu1 [95.2 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main armhf libctf-nobfd0 armhf 2.38.90.20220713-2ubuntu1 [94.9 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main armhf libbinutils armhf 2.38.90.20220713-2ubuntu1 [498 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main armhf binutils armhf 2.38.90.20220713-2ubuntu1 [3170 B] Get:76 http://ftpmaster.internal/ubuntu kinetic/main armhf binutils-common armhf 2.38.90.20220713-2ubuntu1 [223 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main armhf binutils-arm-linux-gnueabihf armhf 2.38.90.20220713-2ubuntu1 [3048 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main armhf libasan6 armhf 11.3.0-4ubuntu1 [2222 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main armhf g++-11 armhf 11.3.0-4ubuntu1 [8982 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-11 armhf 11.3.0-4ubuntu1 [15.7 MB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main armhf libstdc++-11-dev armhf 11.3.0-4ubuntu1 [2125 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcc-11-dev armhf 11.3.0-4ubuntu1 [822 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main armhf cpp-11 armhf 11.3.0-4ubuntu1 [7796 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-11-base armhf 11.3.0-4ubuntu1 [20.5 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main armhf libisl23 armhf 0.25-1 [580 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main armhf dpkg-dev all 1.21.9ubuntu1 [1070 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main armhf libdpkg-perl all 1.21.9ubuntu1 [237 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main armhf lto-disabled-list all 29 [12.3 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main armhf libfakeroot armhf 1.29-1ubuntu1 [25.6 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main armhf fakeroot armhf 1.29-1ubuntu1 [61.8 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main armhf libassuan0 armhf 2.5.5-4 [30.4 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main armhf pinentry-curses armhf 1.2.0-2ubuntu1 [36.2 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main armhf gpg armhf 2.2.27-3ubuntu3 [477 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main armhf gpgconf armhf 2.2.27-3ubuntu3 [112 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main armhf gpg-agent armhf 2.2.27-3ubuntu3 [223 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf linux-libc-dev armhf 5.19.0-9.9 [1255 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main armhf policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.6 MB in 4s (18.7 MB/s) (Reading database ... 13176 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.28-2_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.28-2) over (1:4.4.27-1) ... Preparing to unpack .../libcrypt1_1%3a4.4.28-2_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.28-2) over (1:4.4.27-1) ... Setting up libcrypt1:armhf (1:4.4.28-2) ... (Reading database ... 13178 files and directories currently installed.) Preparing to unpack .../base-files_12.2ubuntu2_armhf.deb ... Unpacking base-files (12.2ubuntu2) over (12ubuntu5) ... Setting up base-files (12.2ubuntu2) ... (Reading database ... 13190 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38-4ubuntu1_armhf.deb ... Unpacking bsdutils (1:2.38-4ubuntu1) over (1:2.37.2-4ubuntu3) ... Setting up bsdutils (1:2.38-4ubuntu1) ... (Reading database ... 13190 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.2+dfsg-1_armhf.deb ... Unpacking libzstd1:armhf (1.5.2+dfsg-1) over (1.4.8+dfsg-3build1) ... Setting up libzstd1:armhf (1.5.2+dfsg-1) ... (Reading database ... 13190 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.45-2_armhf.deb ... Unpacking libgpg-error0:armhf (1.45-2) over (1.43-3) ... Setting up libgpg-error0:armhf (1.45-2) ... (Reading database ... 13190 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-2ubuntu1_armhf.deb ... Unpacking libgcrypt20:armhf (1.10.1-2ubuntu1) over (1.9.4-3ubuntu3) ... Setting up libgcrypt20:armhf (1.10.1-2ubuntu1) ... (Reading database ... 13192 files and directories currently installed.) Preparing to unpack .../libatomic1_12.1.0-5ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (12.1.0-5ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../libubsan1_12.1.0-5ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (12.1.0-5ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../libgomp1_12.1.0-5ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (12.1.0-5ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../gcc-12-base_12.1.0-5ubuntu1_armhf.deb ... Unpacking gcc-12-base:armhf (12.1.0-5ubuntu1) over (12-20220428-1ubuntu1) ... Setting up gcc-12-base:armhf (12.1.0-5ubuntu1) ... (Reading database ... 13192 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.1.0-5ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (12.1.0-5ubuntu1) over (12-20220428-1ubuntu1) ... Setting up libgcc-s1:armhf (12.1.0-5ubuntu1) ... (Reading database ... 13192 files and directories currently installed.) Preparing to unpack .../libcc1-0_12.1.0-5ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (12.1.0-5ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../libstdc++6_12.1.0-5ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (12.1.0-5ubuntu1) over (12-20220428-1ubuntu1) ... Setting up libstdc++6:armhf (12.1.0-5ubuntu1) ... (Reading database ... 13192 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.5-2.1_armhf.deb ... Unpacking liblzma5:armhf (5.2.5-2.1) over (5.2.5-2ubuntu1) ... Setting up liblzma5:armhf (5.2.5-2.1) ... (Reading database ... 13192 files and directories currently installed.) Preparing to unpack .../libblkid1_2.38-4ubuntu1_armhf.deb ... Unpacking libblkid1:armhf (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libblkid1:armhf (2.38-4ubuntu1) ... (Reading database ... 13192 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38-4ubuntu1_armhf.deb ... Unpacking libuuid1:armhf (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libuuid1:armhf (2.38-4ubuntu1) ... Selecting previously unselected package libfdisk1:armhf. (Reading database ... 13193 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.38-4ubuntu1_armhf.deb ... Unpacking libfdisk1:armhf (2.38-4ubuntu1) ... Preparing to unpack .../systemd-sysv_251.2-2ubuntu1_armhf.deb ... Unpacking systemd-sysv (251.2-2ubuntu1) over (249.11-0ubuntu3.1) ... Preparing to unpack .../libapparmor1_3.0.4-3ubuntu1_armhf.deb ... Unpacking libapparmor1:armhf (3.0.4-3ubuntu1) over (3.0.4-2ubuntu2) ... Preparing to unpack .../libip4tc2_1.8.7-1ubuntu6_armhf.deb ... Unpacking libip4tc2:armhf (1.8.7-1ubuntu6) over (1.8.7-1ubuntu5) ... Preparing to unpack .../libselinux1_3.4-1_armhf.deb ... Unpacking libselinux1:armhf (3.4-1) over (3.3-1build2) ... Setting up libselinux1:armhf (3.4-1) ... (Reading database ... 13198 files and directories currently installed.) Preparing to unpack .../libmount1_2.38-4ubuntu1_armhf.deb ... Unpacking libmount1:armhf (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libmount1:armhf (2.38-4ubuntu1) ... (Reading database ... 13198 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.4-1ubuntu1_armhf.deb ... Unpacking libssl3:armhf (3.0.4-1ubuntu1) over (3.0.2-0ubuntu1) ... Preparing to unpack .../mount_2.38-4ubuntu1_armhf.deb ... Unpacking mount (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Preparing to unpack .../libsemanage-common_3.4-1_all.deb ... Unpacking libsemanage-common (3.4-1) over (3.3-1build2) ... Setting up libsemanage-common (3.4-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... 13198 files and directories currently installed.) Preparing to unpack .../libsepol2_3.4-2_armhf.deb ... Unpacking libsepol2:armhf (3.4-2) over (3.3-1build1) ... Setting up libsepol2:armhf (3.4-2) ... (Reading database ... 13198 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1_armhf.deb ... Unpacking libsemanage2:armhf (3.4-1) over (3.3-1build2) ... Setting up libsemanage2:armhf (3.4-1) ... (Reading database ... 13198 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.11.1+dfsg1-2ubuntu1_armhf.deb ... Unpacking passwd (1:4.11.1+dfsg1-2ubuntu1) over (1:4.8.1-2ubuntu2) ... Setting up passwd (1:4.11.1+dfsg1-2ubuntu1) ... Installing new version of config file /etc/default/useradd ... (Reading database ... 13198 files and directories currently installed.) Preparing to unpack .../adduser_3.121ubuntu1_all.deb ... Unpacking adduser (3.121ubuntu1) over (3.118ubuntu5) ... Setting up adduser (3.121ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 13195 files and directories currently installed.) Preparing to unpack .../systemd_251.2-2ubuntu1_armhf.deb ... Unpacking systemd (251.2-2ubuntu1) over (249.11-0ubuntu3.1) ... Preparing to unpack .../libsystemd0_251.2-2ubuntu1_armhf.deb ... Unpacking libsystemd0:armhf (251.2-2ubuntu1) over (249.11-0ubuntu3.1) ... Setting up libsystemd0:armhf (251.2-2ubuntu1) ... (Reading database ... 13231 files and directories currently installed.) Preparing to unpack .../libudev1_251.2-2ubuntu1_armhf.deb ... Unpacking libudev1:armhf (251.2-2ubuntu1) over (249.11-0ubuntu3.1) ... Setting up libudev1:armhf (251.2-2ubuntu1) ... (Reading database ... 13231 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.1_armhf.deb ... Unpacking libapt-pkg6.0:armhf (2.5.1) over (2.4.5) ... Setting up libapt-pkg6.0:armhf (2.5.1) ... (Reading database ... 13231 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.9ubuntu1_armhf.deb ... Unpacking dpkg (1.21.9ubuntu1) over (1.21.1ubuntu2) ... Setting up dpkg (1.21.9ubuntu1) ... (Reading database ... 13235 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1_armhf.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-8ubuntu1) over (0.5.11+git20210903+057cd650a4ed-3build1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... (Reading database ... 13236 files and directories currently installed.) Preparing to unpack .../login_1%3a4.11.1+dfsg1-2ubuntu1_armhf.deb ... Unpacking login (1:4.11.1+dfsg1-2ubuntu1) over (1:4.8.1-2ubuntu2) ... Setting up login (1:4.11.1+dfsg1-2ubuntu1) ... Installing new version of config file /etc/login.defs ... (Reading database ... 13236 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.3+20220423-2_armhf.deb ... Unpacking ncurses-bin (6.3+20220423-2) over (6.3-2) ... Setting up ncurses-bin (6.3+20220423-2) ... (Reading database ... 13236 files and directories currently installed.) Preparing to unpack .../libperl5.34_5.34.0-5ubuntu1_armhf.deb ... Unpacking libperl5.34:armhf (5.34.0-5ubuntu1) over (5.34.0-3ubuntu1) ... Preparing to unpack .../perl_5.34.0-5ubuntu1_armhf.deb ... Unpacking perl (5.34.0-5ubuntu1) over (5.34.0-3ubuntu1) ... Preparing to unpack .../perl-base_5.34.0-5ubuntu1_armhf.deb ... Unpacking perl-base (5.34.0-5ubuntu1) over (5.34.0-3ubuntu1) ... Setting up perl-base (5.34.0-5ubuntu1) ... (Reading database ... 13236 files and directories currently installed.) Preparing to unpack .../perl-modules-5.34_5.34.0-5ubuntu1_all.deb ... Unpacking perl-modules-5.34 (5.34.0-5ubuntu1) over (5.34.0-3ubuntu1) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.10_armhf.deb ... Unpacking libdb5.3:armhf (5.3.28+dfsg1-0.10) over (5.3.28+dfsg1-0.8ubuntu3) ... Setting up libdb5.3:armhf (5.3.28+dfsg1-0.10) ... (Reading database ... 13236 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38-4ubuntu1_armhf.deb ... Unpacking libsmartcols1:armhf (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libsmartcols1:armhf (2.38-4ubuntu1) ... (Reading database ... 13236 files and directories currently installed.) Preparing to unpack .../util-linux_2.38-4ubuntu1_armhf.deb ... Unpacking util-linux (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Selecting previously unselected package util-linux-extra. Preparing to unpack .../util-linux-extra_2.38-4ubuntu1_armhf.deb ... Unpacking util-linux-extra (2.38-4ubuntu1) ... Setting up util-linux-extra (2.38-4ubuntu1) ... (Reading database ... 13248 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.64_all.deb ... Unpacking init-system-helpers (1.64) over (1.62) ... Setting up init-system-helpers (1.64) ... (Reading database ... 13248 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3+20220423-2_all.deb ... Unpacking ncurses-base (6.3+20220423-2) over (6.3-2) ... Setting up ncurses-base (6.3+20220423-2) ... Selecting previously unselected package sgml-base. (Reading database ... 13249 files and directories currently installed.) Preparing to unpack .../sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Setting up sgml-base (1.30) ... (Reading database ... 13277 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.3-1_armhf.deb ... Unpacking libidn2-0:armhf (2.3.3-1) over (2.3.2-2build1) ... Setting up libidn2-0:armhf (2.3.3-1) ... (Reading database ... 13277 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.6-2ubuntu1_armhf.deb ... Unpacking libgnutls30:armhf (3.7.6-2ubuntu1) over (3.7.4-2ubuntu1) ... Setting up libgnutls30:armhf (3.7.6-2ubuntu1) ... (Reading database ... 13277 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.27-3ubuntu3_armhf.deb ... Unpacking gpgv (2.2.27-3ubuntu3) over (2.2.27-3ubuntu2) ... Setting up gpgv (2.2.27-3ubuntu3) ... (Reading database ... 13277 files and directories currently installed.) Preparing to unpack .../archives/apt_2.5.1_armhf.deb ... Unpacking apt (2.5.1) over (2.4.5) ... Setting up apt (2.5.1) ... (Reading database ... 13278 files and directories currently installed.) Preparing to unpack .../logsave_1.46.5-2ubuntu2_armhf.deb ... Unpacking logsave (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../libext2fs2_1.46.5-2ubuntu2_armhf.deb ... Unpacking libext2fs2:armhf (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Setting up libext2fs2:armhf (1.46.5-2ubuntu2) ... (Reading database ... 13278 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.5-2ubuntu2_armhf.deb ... Unpacking e2fsprogs (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Setting up libapparmor1:armhf (3.0.4-3ubuntu1) ... Setting up libfdisk1:armhf (2.38-4ubuntu1) ... Setting up libip4tc2:armhf (1.8.7-1ubuntu6) ... Setting up libssl3:armhf (3.0.4-1ubuntu1) ... Setting up mount (2.38-4ubuntu1) ... Setting up systemd (251.2-2ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (251.2-2ubuntu1) ... (Reading database ... 13278 files and directories currently installed.) Preparing to unpack .../archives/init_1.64_armhf.deb ... Unpacking init (1.64) over (1.62) ... Preparing to unpack .../libcap-ng0_0.8.3-1_armhf.deb ... Unpacking libcap-ng0:armhf (0.8.3-1) over (0.7.9-2.2build3) ... Setting up libcap-ng0:armhf (0.8.3-1) ... (Reading database ... 13280 files and directories currently installed.) Preparing to unpack .../libncurses6_6.3+20220423-2_armhf.deb ... Unpacking libncurses6:armhf (6.3+20220423-2) over (6.3-2) ... Preparing to unpack .../libncursesw6_6.3+20220423-2_armhf.deb ... Unpacking libncursesw6:armhf (6.3+20220423-2) over (6.3-2) ... Preparing to unpack .../libtinfo6_6.3+20220423-2_armhf.deb ... Unpacking libtinfo6:armhf (6.3+20220423-2) over (6.3-2) ... Setting up libtinfo6:armhf (6.3+20220423-2) ... (Reading database ... 13279 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.46.5-2ubuntu2_armhf.deb ... Unpacking libcom-err2:armhf (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../01-libss2_1.46.5-2ubuntu2_armhf.deb ... Unpacking libss2:armhf (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../02-mawk_1.3.4.20200120-3.1_armhf.deb ... Unpacking mawk (1.3.4.20200120-3.1) over (1.3.4.20200120-3) ... Preparing to unpack .../03-libkeyutils1_1.6.1-3ubuntu1_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.1-3ubuntu1) over (1.6.1-2ubuntu3) ... Preparing to unpack .../04-readline-common_8.1.2-1.2_all.deb ... Unpacking readline-common (8.1.2-1.2) over (8.1.2-1) ... Preparing to unpack .../05-libreadline8_8.1.2-1.2_armhf.deb ... Unpacking libreadline8:armhf (8.1.2-1.2) over (8.1.2-1) ... Preparing to unpack .../06-libsqlite3-0_3.39.1-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.39.1-1) over (3.37.2-2) ... Preparing to unpack .../07-openssl_3.0.4-1ubuntu1_armhf.deb ... Unpacking openssl (3.0.4-1ubuntu1) over (3.0.2-0ubuntu1) ... Preparing to unpack .../08-libpng16-16_1.6.37-5_armhf.deb ... Unpacking libpng16-16:armhf (1.6.37-5) over (1.6.37-3build5) ... Preparing to unpack .../09-xz-utils_5.2.5-2.1_armhf.deb ... Unpacking xz-utils (5.2.5-2.1) over (5.2.5-2ubuntu1) ... Preparing to unpack .../10-libctf0_2.38.90.20220713-2ubuntu1_armhf.deb ... Unpacking libctf0:armhf (2.38.90.20220713-2ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../11-libctf-nobfd0_2.38.90.20220713-2ubuntu1_armhf.deb ... Unpacking libctf-nobfd0:armhf (2.38.90.20220713-2ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../12-libbinutils_2.38.90.20220713-2ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.38.90.20220713-2ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../13-binutils_2.38.90.20220713-2ubuntu1_armhf.deb ... Unpacking binutils (2.38.90.20220713-2ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../14-binutils-common_2.38.90.20220713-2ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.38.90.20220713-2ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../15-binutils-arm-linux-gnueabihf_2.38.90.20220713-2ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.38.90.20220713-2ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../16-libasan6_11.3.0-4ubuntu1_armhf.deb ... Unpacking libasan6:armhf (11.3.0-4ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../17-g++-11_11.3.0-4ubuntu1_armhf.deb ... Unpacking g++-11 (11.3.0-4ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../18-gcc-11_11.3.0-4ubuntu1_armhf.deb ... Unpacking gcc-11 (11.3.0-4ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../19-libstdc++-11-dev_11.3.0-4ubuntu1_armhf.deb ... Unpacking libstdc++-11-dev:armhf (11.3.0-4ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../20-libgcc-11-dev_11.3.0-4ubuntu1_armhf.deb ... Unpacking libgcc-11-dev:armhf (11.3.0-4ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../21-cpp-11_11.3.0-4ubuntu1_armhf.deb ... Unpacking cpp-11 (11.3.0-4ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../22-gcc-11-base_11.3.0-4ubuntu1_armhf.deb ... Unpacking gcc-11-base:armhf (11.3.0-4ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../23-libisl23_0.25-1_armhf.deb ... Unpacking libisl23:armhf (0.25-1) over (0.24-2build1) ... Preparing to unpack .../24-dpkg-dev_1.21.9ubuntu1_all.deb ... Unpacking dpkg-dev (1.21.9ubuntu1) over (1.21.1ubuntu2) ... Preparing to unpack .../25-libdpkg-perl_1.21.9ubuntu1_all.deb ... Unpacking libdpkg-perl (1.21.9ubuntu1) over (1.21.1ubuntu2) ... Preparing to unpack .../26-lto-disabled-list_29_all.deb ... Unpacking lto-disabled-list (29) over (25) ... Preparing to unpack .../27-libfakeroot_1.29-1ubuntu1_armhf.deb ... Unpacking libfakeroot:armhf (1.29-1ubuntu1) over (1.28-1ubuntu1) ... Preparing to unpack .../28-fakeroot_1.29-1ubuntu1_armhf.deb ... Unpacking fakeroot (1.29-1ubuntu1) over (1.28-1ubuntu1) ... Preparing to unpack .../29-libassuan0_2.5.5-4_armhf.deb ... Unpacking libassuan0:armhf (2.5.5-4) over (2.5.5-3) ... Preparing to unpack .../30-pinentry-curses_1.2.0-2ubuntu1_armhf.deb ... Unpacking pinentry-curses (1.2.0-2ubuntu1) over (1.1.1-1build2) ... Preparing to unpack .../31-gpg_2.2.27-3ubuntu3_armhf.deb ... Unpacking gpg (2.2.27-3ubuntu3) over (2.2.27-3ubuntu2) ... Preparing to unpack .../32-gpgconf_2.2.27-3ubuntu3_armhf.deb ... Unpacking gpgconf (2.2.27-3ubuntu3) over (2.2.27-3ubuntu2) ... Preparing to unpack .../33-gpg-agent_2.2.27-3ubuntu3_armhf.deb ... Unpacking gpg-agent (2.2.27-3ubuntu3) over (2.2.27-3ubuntu2) ... Preparing to unpack .../34-linux-libc-dev_5.19.0-9.9_armhf.deb ... Unpacking linux-libc-dev:armhf (5.19.0-9.9) over (5.15.0-27.28) ... Preparing to unpack .../35-policyrcd-script-zg2_0.1-3.1_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3.1) over (0.1-3) ... Setting up gcc-11-base:armhf (11.3.0-4ubuntu1) ... Setting up libkeyutils1:armhf (1.6.1-3ubuntu1) ... Setting up lto-disabled-list (29) ... Setting up init (1.64) ... Setting up libsqlite3-0:armhf (3.39.1-1) ... Setting up binutils-common:armhf (2.38.90.20220713-2ubuntu1) ... Setting up linux-libc-dev:armhf (5.19.0-9.9) ... Setting up libctf-nobfd0:armhf (2.38.90.20220713-2ubuntu1) ... Setting up libcom-err2:armhf (1.46.5-2ubuntu2) ... Setting up libassuan0:armhf (2.5.5-4) ... Setting up libgomp1:armhf (12.1.0-5ubuntu1) ... Setting up perl-modules-5.34 (5.34.0-5ubuntu1) ... Setting up libfakeroot:armhf (1.29-1ubuntu1) ... Setting up libasan6:armhf (11.3.0-4ubuntu1) ... Setting up fakeroot (1.29-1ubuntu1) ... Setting up policyrcd-script-zg2 (0.1-3.1) ... Setting up libncurses6:armhf (6.3+20220423-2) ... Setting up xz-utils (5.2.5-2.1) ... Setting up libpng16-16:armhf (1.6.37-5) ... Setting up libatomic1:armhf (12.1.0-5ubuntu1) ... Setting up libss2:armhf (1.46.5-2ubuntu2) ... Setting up util-linux (2.38-4ubuntu1) ... Setting up libncursesw6:armhf (6.3+20220423-2) ... Setting up logsave (1.46.5-2ubuntu2) ... Setting up libubsan1:armhf (12.1.0-5ubuntu1) ... Setting up libgcc-11-dev:armhf (11.3.0-4ubuntu1) ... Setting up libcrypt-dev:armhf (1:4.4.28-2) ... Setting up mawk (1.3.4.20200120-3.1) ... Setting up libbinutils:armhf (2.38.90.20220713-2ubuntu1) ... Setting up libisl23:armhf (0.25-1) ... Setting up openssl (3.0.4-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1.2) ... Setting up libcc1-0:armhf (12.1.0-5ubuntu1) ... Setting up libctf0:armhf (2.38.90.20220713-2ubuntu1) ... Setting up pinentry-curses (1.2.0-2ubuntu1) ... Setting up cpp-11 (11.3.0-4ubuntu1) ... Setting up libperl5.34:armhf (5.34.0-5ubuntu1) ... Setting up libreadline8:armhf (8.1.2-1.2) ... Setting up e2fsprogs (1.46.5-2ubuntu2) ... Setting up perl (5.34.0-5ubuntu1) ... Setting up libdpkg-perl (1.21.9ubuntu1) ... Setting up libstdc++-11-dev:armhf (11.3.0-4ubuntu1) ... Setting up gpgconf (2.2.27-3ubuntu3) ... Setting up binutils-arm-linux-gnueabihf (2.38.90.20220713-2ubuntu1) ... Setting up gpg (2.2.27-3ubuntu3) ... Setting up gpg-agent (2.2.27-3ubuntu3) ... Setting up binutils (2.38.90.20220713-2ubuntu1) ... Setting up dpkg-dev (1.21.9ubuntu1) ... Setting up gcc-11 (11.3.0-4ubuntu1) ... Setting up g++-11 (11.3.0-4ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24184316 armhf kinetic-proposed -c chroot:build-PACKAGEBUILD-24184316 --arch=armhf --dist=kinetic-proposed --nolog libbpp-phyl_2.4.1-7ubuntu1.dsc Initiating build PACKAGEBUILD-24184316 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-122-generic #138-Ubuntu SMP Wed Jun 22 15:05:39 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-036.buildd +==============================================================================+ | libbpp-phyl 2.4.1-7ubuntu1 (armhf) Tue, 19 Jul 2022 17:56:38 +0000 | +==============================================================================+ Package: libbpp-phyl Version: 2.4.1-7ubuntu1 Source Version: 2.4.1-7ubuntu1 Distribution: kinetic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24184316/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-dDiKXf/resolver-TrZ7tI' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-phyl_2.4.1-7ubuntu1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-phyl-dDiKXf/libbpp-phyl-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-dDiKXf' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [391 B] Get:5 copy:/<>/apt_archive ./ Packages [472 B] Fetched 1820 B in 0s (46.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu71 libjsoncpp25 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu71 libjsoncpp25 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 29.2 MB of archives. After this operation, 108 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [690 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main armhf libelf1 armhf 0.187-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main armhf libexpat1 armhf 2.4.8-1 [66.4 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main armhf libicu71 armhf 71.1-3 [10.3 MB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf libxml2 armhf 2.9.14+dfsg-1 [592 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main armhf bsdextrautils armhf 2.38-4ubuntu1 [76.6 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libmagic-mgc armhf 1:5.41-4 [257 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main armhf libmagic1 armhf 1:5.41-4 [80.1 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main armhf file armhf 1:5.41-4 [20.6 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main armhf gettext-base armhf 0.21-6 [37.8 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main armhf groff-base armhf 1.22.4-8build1 [870 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main armhf libnghttp2-14 armhf 1.47.0-1 [63.2 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main armhf libpipeline1 armhf 1.5.6-1 [25.5 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main armhf libpsl5 armhf 0.21.0-1.2build2 [56.9 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main armhf libuv1 armhf 1.44.1-2 [77.0 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main armhf man-db armhf 2.10.2-1 [1151 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main armhf libsigsegv2 armhf 2.13-1ubuntu3 [13.7 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main armhf m4 armhf 1.4.18-5ubuntu2 [191 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main armhf autoconf all 2.71-2 [338 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main armhf autopoint all 0.21-6 [421 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main armhf libarchive13 armhf 3.6.0-1ubuntu1 [338 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main armhf libbrotli1 armhf 1.0.9-2build6 [306 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-6ubuntu1 [18.8 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main armhf libsasl2-2 armhf 2.1.28+dfsg-6ubuntu1 [52.7 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main armhf libldap-2.5-0 armhf 2.5.12+dfsg-2ubuntu1 [157 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build4 [52.8 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main armhf libssh-4 armhf 0.9.6-2build1 [165 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libcurl4 armhf 7.84.0-2 [251 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main armhf libjsoncpp25 armhf 1.9.5-4 [72.3 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main armhf librhash0 armhf 1.4.2-1ubuntu1 [141 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main armhf dh-elpa-helper all 2.0.9ubuntu1 [7610 B] Get:35 http://ftpmaster.internal/ubuntu kinetic/main armhf emacsen-common all 3.0.4 [14.9 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main armhf cmake-data all 3.23.2-1ubuntu1 [1944 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main armhf cmake armhf 3.23.2-1ubuntu1 [4716 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/universe armhf d-shlibs all 0.104 [10.2 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main armhf libdebhelper-perl all 13.8ubuntu1 [66.8 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main armhf libtool all 2.4.7-4 [166 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main armhf dh-autoreconf all 20 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-override-perl all 0.09-3 [9756 B] Get:44 http://ftpmaster.internal/ubuntu kinetic/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main armhf dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:46 http://ftpmaster.internal/ubuntu kinetic/main armhf libdw1 armhf 0.187-1 [223 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main armhf debugedit armhf 1:5.0-4build1 [43.3 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main armhf dwz armhf 0.14-1build2 [99.2 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main armhf gettext armhf 0.21-6 [800 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main armhf debhelper all 13.8ubuntu1 [938 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/universe armhf libbpp-core4 armhf 2.4.1-8 [557 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/universe armhf libbpp-core-dev armhf 2.4.1-8 [1049 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/universe armhf libbpp-seq12 armhf 2.4.1-7 [472 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/universe armhf libbpp-seq-dev armhf 2.4.1-7 [824 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.2 MB in 2s (12.7 MB/s) Selecting previously unselected package libelf1:armhf. (Reading database ... 13328 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.187-1_armhf.deb ... Unpacking libelf1:armhf (0.187-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../01-libexpat1_2.4.8-1_armhf.deb ... Unpacking libexpat1:armhf (2.4.8-1) ... Selecting previously unselected package libicu71:armhf. Preparing to unpack .../02-libicu71_71.1-3_armhf.deb ... Unpacking libicu71:armhf (71.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38-4ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.41-4_armhf.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../06-libmagic1_1%3a5.41-4_armhf.deb ... Unpacking libmagic1:armhf (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.41-4_armhf.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-6_armhf.deb ... Unpacking gettext-base (0.21-6) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../09-libuchardet0_0.0.7-1build2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.22.4-8build1_armhf.deb ... Unpacking groff-base (1.22.4-8build1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../11-libnghttp2-14_1.47.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.47.0-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../12-libpipeline1_1.5.6-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.6-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../13-libpsl5_0.21.0-1.2build2_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.2build2) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../14-libuv1_1.44.1-2_armhf.deb ... Unpacking libuv1:armhf (1.44.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../15-man-db_2.10.2-1_armhf.deb ... Unpacking man-db (2.10.2-1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../16-libsigsegv2_2.13-1ubuntu3_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1ubuntu3) ... Selecting previously unselected package m4. Preparing to unpack .../17-m4_1.4.18-5ubuntu2_armhf.deb ... Unpacking m4 (1.4.18-5ubuntu2) ... Selecting previously unselected package autoconf. Preparing to unpack .../18-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../19-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../20-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../21-autopoint_0.21-6_all.deb ... Unpacking autopoint (0.21-6) ... Selecting previously unselected package libarchive13:armhf. Preparing to unpack .../22-libarchive13_3.6.0-1ubuntu1_armhf.deb ... Unpacking libarchive13:armhf (3.6.0-1ubuntu1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../23-libbrotli1_1.0.9-2build6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2build6) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../24-libsasl2-modules-db_2.1.28+dfsg-6ubuntu1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg-6ubuntu1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../25-libsasl2-2_2.1.28+dfsg-6ubuntu1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg-6ubuntu1) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../26-libldap-2.5-0_2.5.12+dfsg-2ubuntu1_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.12+dfsg-2ubuntu1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../27-librtmp1_2.4+20151223.gitfa8646d.1-2build4_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:armhf. Preparing to unpack .../28-libssh-4_0.9.6-2build1_armhf.deb ... Unpacking libssh-4:armhf (0.9.6-2build1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../29-libcurl4_7.84.0-2_armhf.deb ... Unpacking libcurl4:armhf (7.84.0-2) ... Selecting previously unselected package libjsoncpp25:armhf. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_armhf.deb ... Unpacking libjsoncpp25:armhf (1.9.5-4) ... Selecting previously unselected package librhash0:armhf. Preparing to unpack .../31-librhash0_1.4.2-1ubuntu1_armhf.deb ... Unpacking librhash0:armhf (1.4.2-1ubuntu1) ... Selecting previously unselected package dh-elpa-helper. Preparing to unpack .../32-dh-elpa-helper_2.0.9ubuntu1_all.deb ... Unpacking dh-elpa-helper (2.0.9ubuntu1) ... Selecting previously unselected package emacsen-common. Preparing to unpack .../33-emacsen-common_3.0.4_all.deb ... Unpacking emacsen-common (3.0.4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../34-cmake-data_3.23.2-1ubuntu1_all.deb ... Unpacking cmake-data (3.23.2-1ubuntu1) ... Selecting previously unselected package cmake. Preparing to unpack .../35-cmake_3.23.2-1ubuntu1_armhf.deb ... Unpacking cmake (3.23.2-1ubuntu1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../36-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../37-libdebhelper-perl_13.8ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.8ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../38-libtool_2.4.7-4_all.deb ... Unpacking libtool (2.4.7-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../39-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../41-libsub-override-perl_0.09-3_all.deb ... Unpacking libsub-override-perl (0.09-3) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_1.13.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.0-1) ... Selecting previously unselected package libdw1:armhf. Preparing to unpack .../44-libdw1_0.187-1_armhf.deb ... Unpacking libdw1:armhf (0.187-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../45-debugedit_1%3a5.0-4build1_armhf.deb ... Unpacking debugedit (1:5.0-4build1) ... Selecting previously unselected package dwz. Preparing to unpack .../46-dwz_0.14-1build2_armhf.deb ... Unpacking dwz (0.14-1build2) ... Selecting previously unselected package gettext. Preparing to unpack .../47-gettext_0.21-6_armhf.deb ... Unpacking gettext (0.21-6) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../48-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../49-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../50-debhelper_13.8ubuntu1_all.deb ... Unpacking debhelper (13.8ubuntu1) ... Selecting previously unselected package libbpp-core4:armhf. Preparing to unpack .../51-libbpp-core4_2.4.1-8_armhf.deb ... Unpacking libbpp-core4:armhf (2.4.1-8) ... Selecting previously unselected package libbpp-core-dev:armhf. Preparing to unpack .../52-libbpp-core-dev_2.4.1-8_armhf.deb ... Unpacking libbpp-core-dev:armhf (2.4.1-8) ... Selecting previously unselected package libbpp-seq12:armhf. Preparing to unpack .../53-libbpp-seq12_2.4.1-7_armhf.deb ... Unpacking libbpp-seq12:armhf (2.4.1-7) ... Selecting previously unselected package libbpp-seq-dev. Preparing to unpack .../54-libbpp-seq-dev_2.4.1-7_armhf.deb ... Unpacking libbpp-seq-dev (2.4.1-7) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../55-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.4.8-1) ... Setting up libpipeline1:armhf (1.5.6-1) ... Setting up libicu71:armhf (71.1-3) ... Setting up libpsl5:armhf (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.8ubuntu1) ... Setting up libbrotli1:armhf (1.0.9-2build6) ... Setting up libnghttp2-14:armhf (1.47.0-1) ... Setting up libmagic1:armhf (1:5.41-4) ... Setting up gettext-base (0.21-6) ... Setting up file (1:5.41-4) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-6ubuntu1) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:armhf (1.44.1-2) ... Setting up emacsen-common (3.0.4) ... Setting up libbpp-core4:armhf (2.4.1-8) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up dh-elpa-helper (2.0.9ubuntu1) ... Setting up libsigsegv2:armhf (2.13-1ubuntu3) ... Setting up autopoint (0.21-6) ... Setting up libjsoncpp25:armhf (1.9.5-4) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-6ubuntu1) ... Setting up libssh-4:armhf (0.9.6-2build1) ... Setting up librhash0:armhf (1.4.2-1ubuntu1) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-3) ... Setting up cmake-data (3.23.2-1ubuntu1) ... Setting up libbpp-seq12:armhf (2.4.1-7) ... Setting up libelf1:armhf (0.187-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:armhf (0.187-1) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up libarchive13:armhf (3.6.0-1ubuntu1) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libldap-2.5-0:armhf (2.5.12+dfsg-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbpp-core-dev:armhf (2.4.1-8) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:armhf (7.84.0-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up cmake (3.23.2-1ubuntu1) ... Setting up debhelper (13.8ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-122-generic #138-Ubuntu SMP Wed Jun 22 15:05:39 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.38.90.20220713-2ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-11_11.3.0-4ubuntu1 gcc-11_11.3.0-4ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-4ubuntu1 libstdc++6_12.1.0-5ubuntu1 linux-libc-dev_5.19.0-9.9 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.90.20220713-2ubuntu1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2ubuntu1 binutils-common_2.38.90.20220713-2ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 cmake_3.23.2-1ubuntu1 cmake-data_3.23.2-1ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-4ubuntu1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.8ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 emacsen-common_3.0.4 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-4ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-4ubuntu1 gcc-11-base_11.3.0-4ubuntu1 gcc-12-base_12.1.0-5ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu3 gpg-agent_2.2.27-3ubuntu3 gpgconf_2.2.27-3ubuntu3 gpgv_2.2.27-3ubuntu3 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 init_1.64 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.4-3ubuntu1 libapt-pkg6.0_2.5.1 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1ubuntu1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-4ubuntu1 libassuan0_2.5.5-4 libatomic1_12.1.0-5ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbinutils_2.38.90.20220713-2ubuntu1 libblkid1_2.38-4ubuntu1 libbpp-core-dev_2.4.1-8 libbpp-core4_2.4.1-8 libbpp-seq-dev_2.4.1-7 libbpp-seq12_2.4.1-7 libbrotli1_1.0.9-2build6 libbz2-1.0_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcap-ng0_0.8.3-1 libcap2_1:2.44-1build3 libcc1-0_12.1.0-5ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38.90.20220713-2ubuntu1 libctf0_2.38.90.20220713-2ubuntu1 libcurl4_7.84.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.8ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.9ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-4ubuntu1 libgcc-s1_12.1.0-5ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.6-2ubuntu1 libgomp1_12.1.0-5ubuntu1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.19.2-2 libhogweed6_3.7.3-1build2 libicu71_71.1-3 libidn2-0_2.3.3-1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.25-1 libjson-c5_0.16-1 libjsoncpp25_1.9.5-4 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 libldap-2.5-0_2.5.12+dfsg-2ubuntu1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1build2 libnghttp2-14_1.47.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5ubuntu1 libpipeline1_1.5.6-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libpsl5_0.21.0-1.2build2 libreadline8_8.1.2-1.2 librhash0_1.4.2-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-6ubuntu1 libsasl2-modules-db_2.1.28+dfsg-6ubuntu1 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.39.1-1 libss2_1.46.5-2ubuntu2 libssh-4_0.9.6-2build1 libssl3_3.0.4-1ubuntu1 libstdc++-11-dev_11.3.0-4ubuntu1 libstdc++6_12.1.0-5ubuntu1 libsub-override-perl_0.09-3 libsystemd0_251.2-2ubuntu1 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2build1 libtirpc-dev_1.3.2-2build1 libtirpc3_1.3.2-2build1 libtool_2.4.7-4 libubsan1_12.1.0-5ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.2-2ubuntu1 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libuv1_1.44.1-2 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-9.9 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_29 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.4-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-5ubuntu1 perl-base_5.34.0-5ubuntu1 perl-modules-5.34_5.34.0-5ubuntu1 pinentry-curses_1.2.0-2ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.2-2ubuntu1 systemd-sysv_251.2-2ubuntu1 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-phyl Binary: libbpp-phyl-dev, libbpp-phyl12 Architecture: any Version: 2.4.1-7ubuntu1 Maintainer: Ubuntu Developers Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-phyl Vcs-Git: https://salsa.debian.org/med-team/libbpp-phyl.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev Package-List: libbpp-phyl-dev deb libdevel optional arch=any libbpp-phyl12 deb libs optional arch=any Checksums-Sha1: fe6808b427b667d4d2609e887dad9f571771a1d2 600392 libbpp-phyl_2.4.1.orig.tar.gz 7b80d76d80f16b2b2461ce6068bed119f80b505d 58752 libbpp-phyl_2.4.1-7ubuntu1.debian.tar.xz Checksums-Sha256: e7bf7d4570f756b7773904ffa600ffcd77c965553ddb5cbc252092d1da962ff2 600392 libbpp-phyl_2.4.1.orig.tar.gz f748121c41340aad3275d1288893abcc0fa2255aa2c4ff7cb37298696ce88a5b 58752 libbpp-phyl_2.4.1-7ubuntu1.debian.tar.xz Files: 05c58ac05a1f7525888df2b04c4a800c 600392 libbpp-phyl_2.4.1.orig.tar.gz 1f697bfc0a06df53ba5f19cb7aa4d285 58752 libbpp-phyl_2.4.1-7ubuntu1.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQJOBAEBCgA4FiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmLWzloaHHN0ZXZlLmxh bmdhc2VrQHVidW50dS5jb20ACgkQVo0w8yGyEz1u/g//a5xe8BUyCmotS0TMtlKp /Dz+tREKHAwdEm1EyCcWkznxxYMHETgBp0XH+dxdKxFPsNq+YIBzgYnlgUeNbBh6 GUvYtJe4AnoGXZ2J7aGZ3LjMs/O2gf9Zxyvun9VFtPXDV2HTv+T5JKADub6qjnS2 jKk/z3q3EG+nj7TRrKvfxY5RGbfLpPmuMXPGVIguQzg6eFE+Q/PAmLvmTrLePju9 sameT/f6BoZS8xWfKxzJlSBW3hM926cK8Uc59+YX2rF3H5TYi5Tq/TjnnGqkJ2dH Eh9mZlBfW+JpXOyUcn4Hu/f1UFimY3z1jw9kEvki1Obg4cMja+Pgfoeu4jnr/NDa F5WxLfg6P4Rieyv3pXNK8EseyK7dYHdn7IZPAwzUiCi6HzJTYMCI9MLpLusYs9s0 XvnvZE/VnP/5dxnsOe08mZ71TM97AT1hNpYA0B1mmiwpKwLBjgR9H6VIOCU0zYbZ a+X6MiqCWaEOYGIFgKaV0FahGZ/Eoz9fcww8kLAiwbey4Rdrp5hH5mrFXu8upy5L c/NbMA7xD81VW4PAn/A07xdBHweAnNFDIvG1fPvqIpFs/BdWcArOCqT+q1h0y/DS JXaUz3OY40em7Eaa7lrcgpfmOyVZQ87kC03loaXdN6QxJE5sv8y7sooKL8Me/3tx qChddrV7g5vSWVC/KX4FG+k= =8b2H -----END PGP SIGNATURE----- gpgv: Signature made Tue Jul 19 15:31:38 2022 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libbpp-phyl_2.4.1-7ubuntu1.dsc dpkg-source: info: extracting libbpp-phyl in /<> dpkg-source: info: unpacking libbpp-phyl_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-phyl_2.4.1-7ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying remove_test_likelihood_nh.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24184316 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24184316 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24184316 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbpp-phyl dpkg-buildpackage: info: source version 2.4.1-7ubuntu1 dpkg-buildpackage: info: source distribution kinetic dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 11.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/depend make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/build make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<>/src/Bpp/Phyl/BipartitionList.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<>/src/Bpp/Phyl/BipartitionList.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/BipartitionList.h:43, from /<>/src/Bpp/Phyl/BipartitionList.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/BipartitionList.h:43, from /<>/src/Bpp/Phyl/BipartitionList.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/BipartitionList.h:43, from /<>/src/Bpp/Phyl/BipartitionList.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/BipartitionList.h:43, from /<>/src/Bpp/Phyl/BipartitionList.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<>/src/Bpp/Phyl/BipartitionTools.cpp [ 1%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<>/src/Bpp/Phyl/BipartitionTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/App/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/App/../Tree.h:43, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/App/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/App/../Tree.h:43, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp /usr/include/c++/11/bits/vector.tcc: In static member function ‘static bpp::MultipleDiscreteDistribution* bpp::PhylogeneticsApplicationTools::getMultipleDistributionDefaultInstance(const string&, std::map, std::__cxx11::basic_string >&, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static bpp::MultipleDiscreteDistribution* bpp::PhylogeneticsApplicationTools::getMultipleDistributionDefaultInstance(const string&, std::map, std::__cxx11::basic_string >&, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<>/src/Bpp/Phyl/Distance/BioNJ.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<>/src/Bpp/Phyl/Distance/BioNJ.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/BioNJ.h:43, from /<>/src/Bpp/Phyl/Distance/BioNJ.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/BioNJ.h:43, from /<>/src/Bpp/Phyl/Distance/BioNJ.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/BioNJ.h:43, from /<>/src/Bpp/Phyl/Distance/BioNJ.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/BioNJ.h:43, from /<>/src/Bpp/Phyl/Distance/BioNJ.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<>/src/Bpp/Phyl/Distance/PGMA.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<>/src/Bpp/Phyl/Distance/PGMA.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/PGMA.h:43, from /<>/src/Bpp/Phyl/Distance/PGMA.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/PGMA.h:43, from /<>/src/Bpp/Phyl/Distance/PGMA.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/PGMA.h:43, from /<>/src/Bpp/Phyl/Distance/PGMA.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/PGMA.h:43, from /<>/src/Bpp/Phyl/Distance/PGMA.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void bpp::BppOFrequenciesSetFormat::initialize_(bpp::FrequenciesSet&, const bpp::SiteContainer*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void bpp::BppOFrequenciesSetFormat::initialize_(bpp::FrequenciesSet&, const bpp::SiteContainer*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const string&, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const string&, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoTreeFactory.cpp In file included from /usr/include/c++/11/vector:72, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static bpp::PairedSiteLikelihoods bpp::IOTreepuzzlePairedSiteLikelihoods::read(std::istream&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static bpp::PairedSiteLikelihoods bpp::IOTreepuzzlePairedSiteLikelihoods::read(std::istream&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<>/src/Bpp/Phyl/Io/Newick.cpp In file included from /usr/include/c++/11/vector:72, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector bpp::IOPhymlPairedSiteLikelihoods::read(std::istream&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector bpp::IOPhymlPairedSiteLikelihoods::read(std::istream&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<>/src/Bpp/Phyl/Io/NexusIoTree.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<>/src/Bpp/Phyl/Io/Nhx.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoTreeFactory.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<>/src/Bpp/Phyl/Io/Newick.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<>/src/Bpp/Phyl/Io/NexusIoTree.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Io/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Io/../Tree.h:43, from /<>/src/Bpp/Phyl/Io/IoTree.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Io/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Io/../Tree.h:43, from /<>/src/Bpp/Phyl/Io/IoTree.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<>/src/Bpp/Phyl/Io/Nhx.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 184 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void bpp::DRASDRTreeLikelihoodData::reInit(const bpp::Node*)’: /usr/include/c++/11/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Io/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Io/../Tree.h:43, from /<>/src/Bpp/Phyl/Io/IoTree.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Io/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Io/../Tree.h:43, from /<>/src/Bpp/Phyl/Io/IoTree.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘void bpp::GlobalClockTreeLikelihoodFunctionWrapper::initParameters_()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In member function ‘void bpp::BranchLikelihood::computeLogLikelihood()’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::NNIHomogeneousTreeLikelihood::doNNI(int)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual double bpp::NNIHomogeneousTreeLikelihood::testNNI(int) const’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RASTools.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::RHomogeneousClockTreeLikelihood::initBranchLengthsParameters(bool)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(const bpp::Node*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 184 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void bpp::DRASDRTreeLikelihoodData::reInit(const bpp::Node*)’: /usr/include/c++/11/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘bpp::AbstractMixedSubstitutionModel& bpp::AbstractMixedSubstitutionModel::operator=(const bpp::AbstractMixedSubstitutionModel&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::AbstractSubstitutionModel::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2163:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2163 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::BinarySubstitutionModel::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘void bpp::GlobalClockTreeLikelihoodFunctionWrapper::initParameters_()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp /usr/include/c++/11/bits/stl_algo.h: In member function ‘void bpp::BranchLikelihood::computeLogLikelihood()’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::NNIHomogeneousTreeLikelihood::doNNI(int)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual double bpp::NNIHomogeneousTreeLikelihood::testNNI(int) const’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/GY94.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KCM.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/MG94.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RASTools.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43, from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44, from /<>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44, from /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.h:43, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43, from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44, from /<>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44, from /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.h:43, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::SENCA::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YN98.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::RHomogeneousClockTreeLikelihood::initBranchLengthsParameters(bool)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M1::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M10::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M2::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M3::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M7::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M8::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M9::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void bpp::FullPerAACodonFrequenciesSet::setFrequencies(const std::vector >&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::FullCodonFrequenciesSet::setFrequencies(const std::vector >&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void bpp::MvaFrequenciesSet::updateFrequencies()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(const bpp::Node*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In member function ‘virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::MixtureOfASubstitutionModel::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::F84::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::GTR::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::HKY85::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::L95::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::RN95::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::RN95s::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::SSR::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::T92::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::TN93::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/Coala.h:46, from /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void bpp::Coala::computeEquilibriumFrequencies()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41: /usr/include/c++/11/bits/stl_map.h: In member function ‘bpp::ParameterList bpp::CoalaCore::computeCOA(const bpp::SequenceContainer&, bool)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/DSO78.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JCprot.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JTT92.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG08.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/WAG01.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<>/src/Bpp/Phyl/Model/RE08.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<>/src/Bpp/Phyl/Model/StateMap.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<>/src/Bpp/Phyl/NNITopologySearch.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o -c /<>/src/Bpp/Phyl/Node.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<>/src/Bpp/Phyl/OptimizationTools.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp In file included from /usr/include/c++/11/vector:72, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 130 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:161:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function ‘void bpp::NNITopologySearch::searchPhyML()’: /<>/src/Bpp/Phyl/NNITopologySearch.cpp:290:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 290 | improvement.insert(improvement.begin() + static_cast(pos), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp:296:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 296 | improvement.insert(improvement.end(), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void bpp::NNITopologySearch::searchBetter()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/OptimizationTools.h:43, from /<>/src/Bpp/Phyl/OptimizationTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/OptimizationTools.h:43, from /<>/src/Bpp/Phyl/OptimizationTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o -c /<>/src/Bpp/Phyl/PatternTools.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<>/src/Bpp/Phyl/PhyloStatistics.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void bpp::PhyloStatistics::computeForSubtree_(const bpp::Node*, double&, size_t&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual bpp::MutationPath bpp::AbstractMutationProcess::detailedEvolve(size_t, double) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<>/src/Bpp/Phyl/SitePatterns.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<>/src/Bpp/Phyl/TreeExceptions.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTemplateTools.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘bpp::AbstractMixedSubstitutionModel& bpp::AbstractMixedSubstitutionModel::operator=(const bpp::AbstractMixedSubstitutionModel&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static bpp::Vdouble bpp::TreeTemplateTools::getBranchLengths(const bpp::Node&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Node.h:46, from /<>/src/Bpp/Phyl/TreeTools.h:44, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Node.h:46, from /<>/src/Bpp/Phyl/TreeTools.h:44, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In static member function ‘static void bpp::TreeTemplateTools::getBestRootInSubtree_(bpp::TreeTemplate&, short int, bpp::Node*, std::pair, double> >&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static bpp::Vdouble bpp::TreeTools::getBranchLengths(const bpp::Tree&, int)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::AbstractSubstitutionModel::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2163:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2163 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Linking CXX shared library libbpp-phyl.so cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl.so.12 -o libbpp-phyl.so.12.0.0 "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o" /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::BinarySubstitutionModel::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-phyl.so.12.0.0 libbpp-phyl.so.12 libbpp-phyl.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 68%] Built target bpp-phyl-shared make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 69%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -MF CMakeFiles/test_bowker.dir/test_bowker.cpp.o.d -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<>/test/test_bowker.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/DNA.h:44, from /<>/test/test_bowker.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/DNA.h:44, from /<>/test/test_bowker.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp [ 71%] Linking CXX executable test_bowker cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 71%] Built target test_bowker make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 71%] Building CXX object test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -MF CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o.d -o CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -c /<>/test/test_detailed_simulations.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/GY94.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KCM.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43, from /<>/test/test_detailed_simulations.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43, from /<>/test/test_detailed_simulations.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/VectorTools.h:44, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43, from /<>/test/test_detailed_simulations.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/VectorTools.h:44, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43, from /<>/test/test_detailed_simulations.cpp:40: /usr/include/c++/11/bits/stl_map.h: In function ‘int main()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43, from /<>/test/test_detailed_simulations.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43, from /<>/test/test_detailed_simulations.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/MG94.cpp [ 73%] Linking CXX executable test_detailed_simulations cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_detailed_simulations.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -o test_detailed_simulations -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 [ 73%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 73%] Built target test_detailed_simulations make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 74%] Building CXX object test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -MF CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o.d -o CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -c /<>/test/test_likelihood.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YN98.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43, from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44, from /<>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44, from /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.h:43, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43, from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44, from /<>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44, from /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.h:43, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::SENCA::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/GammaDiscreteDistribution.h:43, from /<>/test/test_likelihood.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/GammaDiscreteDistribution.h:43, from /<>/test/test_likelihood.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M1::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M10::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Linking CXX executable test_likelihood cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -o test_likelihood -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 76%] Built target test_likelihood make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 76%] Building CXX object test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -MF CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o.d -o CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -c /<>/test/test_likelihood_clock.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M2::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M7::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M3::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp [ 78%] Linking CXX executable test_likelihood_clock cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_clock.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -o test_likelihood_clock -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 78%] Built target test_likelihood_clock make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 78%] Building CXX object test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o -MF CMakeFiles/test_mapping.dir/test_mapping.cpp.o.d -o CMakeFiles/test_mapping.dir/test_mapping.cpp.o -c /<>/test/test_mapping.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M8::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::YNGP_M9::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void bpp::FullPerAACodonFrequenciesSet::setFrequencies(const std::vector >&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::FullCodonFrequenciesSet::setFrequencies(const std::vector >&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In constructor ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void bpp::MvaFrequenciesSet::updateFrequencies()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp [ 80%] Linking CXX executable test_mapping cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping.dir/test_mapping.cpp.o -o test_mapping -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 80%] Built target test_mapping make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 80%] Building CXX object test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -MF CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o.d -o CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -c /<>/test/test_mapping_codon.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void bpp::MixtureOfASubstitutionModel::updateMatrices()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping_codon.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping_codon.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp [ 83%] Linking CXX executable test_mapping_codon cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping_codon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -o test_mapping_codon -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 83%] Built target test_mapping_codon make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_models.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 83%] Building CXX object test/CMakeFiles/test_models.dir/test_models.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_models.dir/test_models.cpp.o -MF CMakeFiles/test_models.dir/test_models.cpp.o.d -o CMakeFiles/test_models.dir/test_models.cpp.o -c /<>/test/test_models.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::F84::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::GTR::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::HKY85::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp [ 84%] Linking CXX executable test_models cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_models.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_models.dir/test_models.cpp.o -o test_models -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 84%] Built target test_models make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_nhx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 84%] Building CXX object test/CMakeFiles/test_nhx.dir/test_nhx.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_nhx.dir/test_nhx.cpp.o -MF CMakeFiles/test_nhx.dir/test_nhx.cpp.o.d -o CMakeFiles/test_nhx.dir/test_nhx.cpp.o -c /<>/test/test_nhx.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::L95::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp [ 85%] Linking CXX executable test_nhx cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_nhx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_nhx.dir/test_nhx.cpp.o -o test_nhx -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 85%] Built target test_nhx make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 85%] Building CXX object test/CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -MF CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o.d -o CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -c /<>/test/test_parsimony.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::RN95::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::SSR::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::RN95s::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/DNA.h:44, from /usr/include/Bpp/Seq/Alphabet/AlphabetTools.h:43, from /<>/test/test_parsimony.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/DNA.h:44, from /usr/include/Bpp/Seq/Alphabet/AlphabetTools.h:43, from /<>/test/test_parsimony.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 86%] Linking CXX executable test_parsimony cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parsimony.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -o test_parsimony -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 86%] Built target test_parsimony make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_simulations.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 87%] Building CXX object test/CMakeFiles/test_simulations.dir/test_simulations.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_simulations.dir/test_simulations.cpp.o -MF CMakeFiles/test_simulations.dir/test_simulations.cpp.o.d -o CMakeFiles/test_simulations.dir/test_simulations.cpp.o -c /<>/test/test_simulations.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::T92::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void bpp::TN93::setFreq(std::map&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43, from /<>/test/test_simulations.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43, from /<>/test/test_simulations.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43, from /<>/test/test_simulations.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43, from /<>/test/test_simulations.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘int main()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/DSO78.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/Coala.h:46, from /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void bpp::Coala::computeEquilibriumFrequencies()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Linking CXX executable test_simulations cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simulations.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_simulations.dir/test_simulations.cpp.o -o test_simulations -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JCprot.cpp In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41: /usr/include/c++/11/bits/stl_map.h: In member function ‘bpp::ParameterList bpp::CoalaCore::computeCOA(const bpp::SequenceContainer&, bool)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 89%] Built target test_simulations make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 89%] Building CXX object test/CMakeFiles/test_tree.dir/test_tree.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_tree.dir/test_tree.cpp.o -MF CMakeFiles/test_tree.dir/test_tree.cpp.o.d -o CMakeFiles/test_tree.dir/test_tree.cpp.o -c /<>/test/test_tree.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JTT92.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG08.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTemplate.h:44, from /<>/test/test_tree.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTemplate.h:44, from /<>/test/test_tree.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 90%] Linking CXX executable test_tree cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree.dir/test_tree.cpp.o -o test_tree -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 90%] Built target test_tree make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_getpath.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 91%] Building CXX object test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -MF CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o.d -o CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -c /<>/test/test_tree_getpath.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp [ 91%] Linking CXX executable test_tree_getpath cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_getpath.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -o test_tree_getpath -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 91%] Built target test_tree_getpath make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_rootat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 91%] Building CXX object test/CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -MF CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o.d -o CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -c /<>/test/test_tree_rootat.cpp [ 92%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTemplate.h:44, from /<>/test/test_tree_rootat.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTemplate.h:44, from /<>/test/test_tree_rootat.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 93%] Linking CXX executable test_tree_rootat cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_rootat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -o test_tree_rootat -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 93%] Built target test_tree_rootat [ 93%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/WAG01.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<>/src/Bpp/Phyl/Model/RE08.cpp [ 95%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<>/src/Bpp/Phyl/Model/StateMap.cpp [ 95%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<>/src/Bpp/Phyl/NNITopologySearch.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o -c /<>/src/Bpp/Phyl/Node.cpp [ 97%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<>/src/Bpp/Phyl/OptimizationTools.cpp [ 97%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp In file included from /usr/include/c++/11/vector:72, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 130 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:161:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function ‘void bpp::NNITopologySearch::searchPhyML()’: /<>/src/Bpp/Phyl/NNITopologySearch.cpp:290:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 290 | improvement.insert(improvement.begin() + static_cast(pos), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp:296:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 296 | improvement.insert(improvement.end(), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp In file included from /usr/include/c++/11/vector:67, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void bpp::NNITopologySearch::searchBetter()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o -c /<>/src/Bpp/Phyl/PatternTools.cpp [ 98%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<>/src/Bpp/Phyl/PhyloStatistics.cpp [ 98%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/OptimizationTools.h:43, from /<>/src/Bpp/Phyl/OptimizationTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/OptimizationTools.h:43, from /<>/src/Bpp/Phyl/OptimizationTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 99%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp [ 99%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void bpp::PhyloStatistics::computeForSubtree_(const bpp::Node*, double&, size_t&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual bpp::MutationPath bpp::AbstractMutationProcess::detailedEvolve(size_t, double) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 99%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<>/src/Bpp/Phyl/SitePatterns.cpp [ 99%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<>/src/Bpp/Phyl/TreeExceptions.cpp [100%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTemplateTools.cpp [100%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTools.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static bpp::Vdouble bpp::TreeTemplateTools::getBranchLengths(const bpp::Node&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Node.h:46, from /<>/src/Bpp/Phyl/TreeTools.h:44, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Node.h:46, from /<>/src/Bpp/Phyl/TreeTools.h:44, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In static member function ‘static void bpp::TreeTemplateTools::getBestRootInSubtree_(bpp::TreeTemplate&, short int, bpp::Node*, std::pair, double> >&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTools.cpp:40: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTools.cpp:40: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static bpp::Vdouble bpp::TreeTools::getBranchLengths(const bpp::Tree&, int)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [100%] Linking CXX static library libbpp-phyl.a cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-static.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-phyl.a "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o" /usr/bin/ranlib libbpp-phyl.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target bpp-phyl-static make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /<>/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_bowker 1: Test command: /<>/obj-arm-linux-gnueabihf/test/test_bowker 1: Test timeout computed to be: 60000 test 2 Start 2: test_detailed_simulations 2: Test command: /<>/obj-arm-linux-gnueabihf/test/test_detailed_simulations 2: Test timeout computed to be: 60000 test 3 Start 3: test_likelihood 3: Test command: /<>/obj-arm-linux-gnueabihf/test/test_likelihood 3: Test timeout computed to be: 60000 test 4 Start 4: test_likelihood_clock 4: Test command: /<>/obj-arm-linux-gnueabihf/test/test_likelihood_clock 4: Test timeout computed to be: 60000 1: / 1 - 2 \ 3 nodes loaded. 1: ..:: Testing with homogeneous model ::.. 2: / 1 - 2 \ 3 - 4 / 5 - 6 nodes loaded. 2: 4 3: / 1 - 2 \ 3 - 4 / 5 - 6 nodes loaded. 3: Testing Single Tree Traversal likelihood class... 3: Initializing data structure............: Done. 3: Number of distinct sites...............: 12 3: Test model.............................: T92 3: 85.030942031950203841 3: * initial likelihood...................: 85.0309 3: Initial bracketing: 3: A: x = 0.5, f = 80.2872 3: B: x = 2.11803, f = 71.6905 3: C: x = 2.76139, f = 71.7653 3: Step scale factor Function Time 3: 0 2.11803 71.690520 0.000000 3: Optimizing... / 11 2.11803 71.690520 0.000000 3: Done. 3: Tree scaled by.........................: 8.31477 3: * likelihood after tree scale..........: 71.6905 4: / 1 - 2 \ 3 - 4 / 5 - 6 \ 7 nodes loaded. 4: Initializing data structure............: Done. 4: Number of distinct sites...............: 14 4: Test model.............................: T92 4: 94.395699097704181213 4: * initial likelihood...................: 94.3957 4: Log-likelihood after adding clock......: 94.3957 3: Optimizing... / 1 Optimizing... - 2 Optimizing... \ 3 Optimizing... - 4 Optimizing... / 5 Optimizing... - 6 Optimizing... \ 7 Optimizing... - 8 Optimizing... / 9 Optimizing... - 10 Optimizing... \ 11 Optimizing... - 12 Optimizing... / 13 Optimizing... - 14 Optimizing... \ 15 Optimizing... - 16 Optimizing... / 17 Optimizing... - 18 Optimizing... \ 19 Optimizing... - 20 Optimizing... / 21 Optimizing... - 22 Optimizing... \ 23 Optimizing... - 24 Optimizing... / 25 Optimizing... - 26 Optimizing... \ 27 Optimizing... - 28 Optimizing... / 29 Optimizing... - 30 Optimizing... \ 31 3: 3: 65.72293577215039306338 3: * likelihood after full optimization...: 65.7229 3: Testing Double Tree Traversal likelihood class... 3: Initializing data structure............: Done. 3: Number of distinct sites...............: 12 3: Test model.............................: T92 3: 85.03094203195020384101 3: * initial likelihood...................: 85.0309 3: Initial bracketing: 3: A: x = 0.5, f = 80.2872 3: B: x = 2.11803, f = 71.6905 3: C: x = 2.76139, f = 71.7653 3: Step scale factor Function Time 3: 0 2.11803 71.690520 0.000000 3: Optimizing... / 11 2.11803 71.690520 0.000000 3: Done. 3: Tree scaled by.........................: 8.31477 3: * likelihood after tree scale..........: 71.6905 4: Optimizing... / 1 Optimizing... - 2 Optimizing... \ 3 Optimizing... - 4 Optimizing... / 5 Optimizing... - 6 Optimizing... \ 7 Optimizing... - 8 Optimizing... / 9 Optimizing... - 10 Optimizing... \ 11 Optimizing... - 12 Optimizing... / 13 Optimizing... - 14 Optimizing... \ 15 Optimizing... - 16 Optimizing... / 17 Optimizing... - 18 Optimizing... \ 19 Optimizing... - 20 Optimizing... / 21 Optimizing... - 22 Optimizing... \ 23 Optimizing... - 24 Optimizing... / 25 Optimizing... - 26 Optimizing... \ 27 Optimizing... - 28 Optimizing... / 29 Optimizing... - 30 Optimizing... \ 31 Optimizing... - 32 4: 4: 71.26579958637299228 4: * likelihood after full optimization...: 71.2658 4: Name: Value: Constraint: 4: _________________________________________________ 4: BrLen0 0.143684 [ 1e-06; 10000] 4: BrLen1 0.143684 [ 1e-06; 10000] 4: BrLen2 0.031698 [ 1e-06; 10000] 4: BrLen3 0.175382 [ 1e-06; 10000] 4: BrLen4 0.272930 [ 1e-06; 10000] 4: BrLen5 0.448312 [ 1e-06; 10000] 4: T92.kappa 0.996464 ]0; +inf[ 4: T92.theta 0.579955 ]1e-06; 0.999999[ 4: Initializing data structure............: Done. 4: Number of distinct sites...............: 14 4: Test model.............................: T92 4: 92.32951163315719611546 4: * initial likelihood...................: 92.3295 4: Optimizing... / 1 Optimizing... \ 15 Optimizing... - 22 Optimizing... / 29 Optimizing... / 37 Optimizing... / 45 Optimizing... - 52 Optimizing... \ 59 Optimizing... \ 67 Optimizing... \ 75 Optimizing... / 81 Optimizing... - 88 Optimizing... \ 95 Optimizing... \ 103 Optimizing... - 110 Optimizing... - 116 Optimizing... - 124 Optimizing... \ 131 Optimizing... \ 139 Optimizing... \ 147 4: 4: 71.26579406919543657750 4: * likelihood after full optimization...: 71.2658 4: Name: Value: Constraint: 4: _________________________________________________ 4: TotalHeight 0.448127 [ 0; 10000] 4: HeightP4 0.390916 [ 0; 1] 4: HeightP2 0.819072 [ 0; 1] 4: T92.kappa 0.996398 ]0; +inf[ 4: T92.theta 0.579960 ]1e-06; 0.999999[ 1/13 Test #4: test_likelihood_clock ............ Passed 0.14 sec test 5 Start 5: test_mapping 5: Test command: /<>/obj-arm-linux-gnueabihf/test/test_mapping 5: Test timeout computed to be: 60000 5: / 1 - 2 \ 3 - 4 / 5 - 6 nodes loaded. 5: 4x4 5: [ 5: [-1.37306, 0.362694, 0.906736, 0.103627] 5: [0.103627, -0.984456, 0.362694, 0.518135] 5: [0.259067, 0.362694, -0.777202, 0.15544] 5: [0.0518135, 0.906736, 0.272021, -1.23057] 5: ] 3: Optimizing... / 1 Optimizing... - 2 Optimizing... \ 3 Optimizing... - 4 Optimizing... / 5 Optimizing... - 6 Optimizing... \ 7 Optimizing... - 8 Optimizing... / 9 Optimizing... - 10 Optimizing... \ 11 Optimizing... - 12 Optimizing... / 13 Optimizing... - 14 Optimizing... \ 15 Optimizing... - 16 Optimizing... / 17 Optimizing... - 18 Optimizing... \ 19 Optimizing... - 20 Optimizing... / 21 Optimizing... - 22 Optimizing... \ 23 Optimizing... - 24 Optimizing... / 25 Optimizing... - 26 Optimizing... \ 27 Optimizing... - 28 Optimizing... / 29 Optimizing... - 30 Optimizing... \ 31 3: 3: 65.72293577215069149133 3: * likelihood after full optimization...: 65.7229 3: Initializing data structure............: Done. 3: Number of distinct sites...............: 12 3: Initializing data structure............: Done. 3: Number of distinct sites...............: 12 3: BrLen0 -212.54368339472844695592 -212.54368339472844695592 3: BrLen1 -107.42239645667785907790 -107.42239645667787328875 3: BrLen2 3.41183634475365238359 3.41183634475364838679 3: BrLen3 -187.23500312051925220658 -187.23500312051925220658 3: BrLen4 -56.02595035016005198258 -56.02595035016005908801 2/13 Test #3: test_likelihood .................. Passed 0.24 sec test 6 Start 6: test_mapping_codon 6: Test command: /<>/obj-arm-linux-gnueabihf/test/test_mapping_codon 6: Test timeout computed to be: 60000 6: / 1 - 2 \ 3 - 4 / 5 - 6 nodes loaded. 5: [ ] 0% [= ] 2% [== ] 5% [=== ] 7% [==== ] 10% [===== ] 13% [====== ] 15% [======= ] 18% [======== ] 21% [========= ] 23% [========== ] 26% [=========== ] 28% [============ ] 31% [============= ] 34% [============== ] 36% [=============== ] 39% [================ ] 42% [================= ] 44% [================== ] 47% [=================== ] 50% [==================== ] 52% [===================== ] 55% [====================== ] 57% [======================= ] 60% [======================== ] 63% [========================= ] 65% [========================== ] 68% [=========================== ] 71% [============================ ] 73% [============================= ] 76% [============================== ] 78% [=============================== ] 81% [================================ ] 84% [================================= ] 86% [================================== ] 89% [=================================== ] 92% [==================================== ] 94% [===================================== ] 97% [======================================] 100%Done. 5: Initializing data structure............: Done. 5: Number of distinct sites...............: 78 5: 77335.4 5: Analytical (Laplace) total count: 5: 4x4 5: [ 5: [2.77963e-07, 1.00058, 1.00009, 1.00159] 5: [1.00058, 6.39004e-07, 1.00032, 1.00007] 5: [1.00009, 1.00032, 4.08766e-07, 1.00069] 5: [1.00159, 1.00007, 1.00069, 5.17576e-07] 5: ] 5: Compute joint node-pairs likelihood....: 5: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 5: Simple total count: 5: 4x4 5: [ 5: [0, 1, 1, 1] 5: [1, 0, 1, 1] 5: [1, 1, 0, 1] 5: [1, 1, 1, 0] 5: ] 5: Compute joint node-pairs likelihood....: 5: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 5: Detailed count, type 1: 5: 4x4 5: [ 5: [0, 1, 0, 0] 5: [0, 0, 0, 0] 5: [0, 0, 0, 0] 5: [0, 0, 0, 0] 5: ] 5: Compute joint node-pairs likelihood....: 5: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 5: Total count, decomposition method: 5: 4x4 5: [ 5: [2.77963e-07, 1.00058, 1.00009, 1.00159] 5: [1.00058, 6.39004e-07, 1.00032, 1.00007] 5: [1.00009, 1.00032, 4.08766e-07, 1.00069] 5: [1.00159, 1.00007, 1.00069, 5.17576e-07] 5: ] 5: Compute joint node-pairs likelihood....: 5: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 5: Detailed count, decomposition method, type 1: 5: 4x4 5: [ 5: [1.88022e-08, 0.999417, 7.25503e-05, 0.000905434] 5: [6.26415e-09, 1.87973e-08, 6.26403e-09, 6.26555e-09] 5: [6.26537e-09, 0.000129478, 5.67996e-12, 5.21646e-08] 5: [6.26139e-09, 1.03721e-05, 4.17684e-09, 1.62422e-12] 5: ] 2: Br0 BrLen = 0.001 counts = 0.00124 2: 4x4 2: [ 2: [0, 2e-05, 0.0001, 3e-05] 2: [7e-05, 0, 9e-05, 0.00025] 2: [0.00012, 0.00017, 0, 9e-05] 2: [1e-05, 0.00019, 0.0001, 0] 2: ] 2: Br1 BrLen = 0.002 counts = 0.00174 2: 4x4 2: [ 2: [0, 3e-05, 0.00019, 1e-05] 2: [7e-05, 0, 0.00023, 0.00027] 2: [0.00017, 0.00028, 0, 0.00011] 2: [2e-05, 0.00026, 0.0001, 0] 2: ] 2: Br2 BrLen = 0.003 counts = 0.00303 2: 4x4 2: [ 2: [0, 0.00012, 0.0002, 1e-05] 2: [9e-05, 0, 0.00046, 0.00049] 2: [0.00033, 0.00046, 0, 0.00016] 2: [5e-05, 0.00046, 0.0002, 0] 2: ] 2: Br3 BrLen = 0.01 counts = 0.01025 2: 4x4 2: [ 2: [0, 0.00034, 0.00085, 0.00012] 2: [0.00038, 0, 0.00136, 0.00154] 2: [0.0012, 0.0015, 0, 0.00038] 2: [6e-05, 0.00195, 0.00057, 0] 2: ] 2: Br4 BrLen = 0.1 counts = 0.10069 2: 4x4 2: [ 2: [0, 0.00339, 0.00899, 0.00121] 2: [0.00386, 0, 0.01378, 0.01791] 2: [0.00918, 0.01234, 0, 0.0054] 2: [0.00083, 0.01816, 0.00564, 0] 2: ] 3/13 Test #2: test_detailed_simulations ........ Passed 2.78 sec test 7 Start 7: test_models 7: Test command: /<>/obj-arm-linux-gnueabihf/test/test_models 7: Test timeout computed to be: 60000 5: Compute joint node-pairs likelihood....: 5: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 5: Total count, uniformization method: 5: 4x4 5: [ 5: [2.77963e-07, 1.00058, 1.00009, 1.00159] 5: [1.00058, 6.39004e-07, 1.00032, 1.00007] 5: [1.00009, 1.00032, 4.08766e-07, 1.00069] 5: [1.00159, 1.00007, 1.00069, 5.17576e-07] 5: ] 5: Compute joint node-pairs likelihood....: 4/13 Test #7: test_models ...................... Passed 0.20 sec test 8 Start 8: test_nhx 8: Test command: /<>/obj-arm-linux-gnueabihf/test/test_nhx 8: Test timeout computed to be: 60000 5/13 Test #8: test_nhx ......................... Passed 0.03 sec test 9 Start 9: test_parsimony 9: Test command: /<>/obj-arm-linux-gnueabihf/test/test_parsimony 9: Test timeout computed to be: 60000 5: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 5: Detailed count, uniformization method, type 1: 5: 4x4 5: [ 5: [1.88022e-08, 0.999417, 7.25503e-05, 0.000905434] 5: [6.26415e-09, 1.87973e-08, 6.26403e-09, 6.26555e-09] 5: [6.26538e-09, 0.000129478, 5.67996e-12, 5.21646e-08] 5: [6.2614e-09, 1.03721e-05, 4.17684e-09, 1.62422e-12] 5: ] 9: Initializing data structure............: Done. 9: Number of distinct sites...............: 9 9: Parsimony score: 9 6/13 Test #9: test_parsimony ................... Passed 0.03 sec test 10 Start 10: test_simulations 10: Test command: /<>/obj-arm-linux-gnueabihf/test/test_simulations 10: Test timeout computed to be: 60000 10: / 1 - 2 \ 3 - 4 / 5 - 6 nodes loaded. 10: Theta0 set to 0.500605 10: Theta1 set to 0.0204322 10: Theta2 set to 0.782413 10: Theta3 set to 0.542957 10: Theta4 set to 0.907979 10: Fast check: 5: Compute joint node-pairs likelihood....: 5: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 5: checking saturation... 5: Total count, uniformization method for 0.001 5: 4x4 5: [ 5: [1.88022e-08, 0.999417, 7.25503e-05, 0.000905434] 5: [6.26415e-09, 1.87973e-08, 6.26403e-09, 6.26555e-09] 5: [6.26538e-09, 0.000129478, 5.67996e-12, 5.21646e-08] 5: [6.2614e-09, 1.03721e-05, 4.17684e-09, 1.62422e-12] 5: ] 5: 1.00054 5: Total count, uniformization method for 0.01 5: 4x4 5: [ 5: [1.889e-06, 0.994193, 0.000726534, 0.00893853] 5: [6.26412e-07, 1.88408e-06, 6.26292e-07, 6.27813e-07] 5: [6.27639e-07, 0.00128979, 5.68014e-09, 5.18367e-06] 5: [6.23692e-07, 0.000104565, 4.18345e-07, 1.63666e-09] 5: ] 5: 1.00527 5: Total count, uniformization method for 0.1 5: 4x4 5: [ 5: [0.000197817, 0.943925, 0.00736743, 0.0790401] 5: [6.2616e-05, 0.000192449, 6.25088e-05, 6.40223e-05] 5: [6.38545e-05, 0.0124136, 5.6745e-06, 0.00048712] 5: [6.02023e-05, 0.00113076, 4.24625e-05, 1.76082e-06] 5: ] 5: 1.04512 5: Total count, uniformization method for 1 5: 4x4 5: [ 5: [0.0286612, 0.608829, 0.0821228, 0.326937] 5: [0.00606775, 0.0198151, 0.00604437, 0.00736535] 5: [0.00727477, 0.0881117, 0.00496831, 0.0282317] 5: [0.00511388, 0.0199839, 0.00462052, 0.00269626] 5: ] 5: 1.24684 5: Total count, uniformization method for 2 5: 4x4 5: [ 5: [0.124825, 0.467151, 0.171008, 0.358763] 5: [0.022682, 0.0637612, 0.0227343, 0.030364] 5: [0.0302742, 0.13344, 0.0284952, 0.0701394] 5: [0.0192284, 0.0558704, 0.0187737, 0.0207634] 5: ] 5: 1.63827 5: Total count, uniformization method for 3 5: 4x4 5: [ 5: [0.228462, 0.432516, 0.248514, 0.368247] 5: [0.0470044, 0.10906, 0.0473025, 0.0637796] 5: [0.0644116, 0.167531, 0.0645082, 0.109068] 5: [0.0411172, 0.0980252, 0.0410803, 0.053025] 5: ] 5: 2.18365 5: Total count, uniformization method for 4 5: 4x4 5: [ 5: [0.30213, 0.44007, 0.309514, 0.386018] 5: [0.0764652, 0.150843, 0.077042, 0.10092] 5: [0.102653, 0.200448, 0.103646, 0.145489] 5: [0.0688548, 0.139736, 0.0692426, 0.0902657] 5: ] 5: 2.76334 5: Total count, uniformization method for 10 5: 4x4 5: [ 5: [0.549333, 0.636937, 0.550434, 0.584757] 5: [0.286889, 0.374039, 0.28796, 0.321832] 5: [0.325668, 0.413099, 0.326756, 0.360895] 5: [0.277113, 0.364216, 0.278181, 0.312009] 5: ] 5: 6.25012 5: A 0.001 51 49.7324 49.6937 49.6937 49.7324 49.7324 49.7324 49.7324 5: B 0.002 107 108.583 108.425 108.425 108.583 108.583 108.583 108.583 5: 0.008 396 400.859 398.387 398.387 400.859 400.859 400.859 400.859 5: C 0.01 506 511.986 508.121 508.121 511.986 511.986 511.986 511.986 5: D 0.02 1017 1019.53 1004.04 1004.04 1019.53 1019.53 1019.53 1019.53 10: Initializing data structure............: Done. 10: Number of distinct sites...............: 185 5: A 0.001 0.0118522/0 0.0140583/0 0.0140583/0 5.01898/5 5.02354/5 5.02354/5 0.999764/1 0.998594/1 0.998594/1 2.9844/3 2.98477/3 2.98477/3 5: B 0.002 4.01727/4 4.02239/4 4.02239/4 6.97575/7 6.99457/7 6.99457/7 1.00458/1 1.00391/1 1.00391/1 3.99441/4 3.99847/4 3.99847/4 5: 0.008 14.2592/15 14.338/15 14.338/15 28.915/28 29.2089/28 29.2089/28 4.06174/4 4.04749/4 4.04749/4 10.2513/10 10.3654/10 10.3654/10 5: C 0.01 17.7016/18 17.808/18 17.808/18 47.6929/48 48.1416/48 48.1416/48 5.20319/5 5.18618/5 5.18618/5 8.10634/8 8.31784/8 8.31784/8 5: D 0.02 49.0372/49 49.3308/49 49.3308/49 85.9866/89 87.8504/89 87.8504/89 8.366/8 8.41006/8 8.41006/8 39.2027/41 39.5293/41 39.5293/41 7/13 Test #5: test_mapping ..................... Passed 4.72 sec test 11 Start 11: test_tree 11: Test command: /<>/obj-arm-linux-gnueabihf/test/test_tree 11: Test timeout computed to be: 60000 11: / 1 - 2 \ 3 - 4 / 5 nodes loaded. 11: ((A:1,B:2):3,C:4); 11: 11: / 1 - 2 \ 3 - 4 / 5 nodes loaded. 11: ((A:1,B:2):3,C:4):5; 11: 11: ((A,B),C); 11: 11: ((A:1,B:2):3,C:4):5; 11: 11: ((A:1,B:2)80:3,C:4):5; 11: 11: Node 0: 11: Node 1: 11: Node 2: 11: N: BOOTSTRAP=80 11: Node 3: 11: Node 4: 11: N: BOOTSTRAP=2 11: ((A,B),C); 11: 11: Node 0: 11: Node 1: 11: Node 2: 11: B: ESS=aa 11: Node 3: 11: Node 4: 11: B: ESS=2 11: Newick I/O ok. 1: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0351 0.0051 1: ..:: Testing with homogeneous, non-stationary model ::.. 11: Newick multiple I/O ok. 11: Testing parsing a directory... 11: Ok, reading on directory throws exception! 11: Testing parsing a directory for multiple trees... 11: Error, no exception should be thrown here! 11: Testing a tree with a node of degree 2: 11: / 1 - 2 \ 3 - 4 nodes loaded. 11: ((A:1):2,B); 11: 11: Testing a tree with a node of degree 2, without branch length: 11: / 1 - 2 \ 3 - 4 nodes loaded. 11: ((A),B); 11: 11: Testing a tree with several single nodes: 11: / 1 - 2 \ 3 - 4 / 5 - 6 \ 7 - 8 nodes loaded. 11: ((((((A)):1)):3),B); 11: 11: Testing a tree with a single leaf: 11: / 1 - 2 nodes loaded. 11: (A:1); 11: 11: Testing a tree with a single node: 11: / 1 - 2 \ 3 nodes loaded. 11: ((A:1)); 11: 11: Testing a tree with a single node and branch lengths: 11: / 1 - 2 \ 3 nodes loaded. 11: ((A:1):2); 11: 8/13 Test #11: test_tree ........................ Passed 12.48 sec test 12 Start 12: test_tree_getpath 12: Test command: /<>/obj-arm-linux-gnueabihf/test/test_tree_getpath 12: Test timeout computed to be: 60000 12: / 1 - 2 \ 3 - 4 / 5 nodes loaded. 12: Id node1 0 12: Id node2 1 12: Ids of path: 12: 0 12: 4 12: 3 12: 1 12: Id node1 0 12: Id node3 2 12: Ids of path: 12: 0 12: 4 12: 3 12: 2 9/13 Test #12: test_tree_getpath ................ Passed 0.02 sec test 13 Start 13: test_tree_rootat 13: Test command: /<>/obj-arm-linux-gnueabihf/test/test_tree_rootat 13: Test timeout computed to be: 60000 13: Total length...........................: 97.2398 1: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0411 0.0058 1: ..:: Testing with non-homogeneous, non-stationary model ::.. 10/13 Test #13: test_tree_rootat ................. Passed 0.38 sec 6: [ ] 0% [= ] 2% [== ] 5% [=== ] 7% [==== ] 10% [===== ] 13% [====== ] 15% [======= ] 18% [======== ] 21% [========= ] 23% [========== ] 26% [=========== ] 28% [============ ] 31% [============= ] 34% [============== ] 36% [=============== ] 39% [================ ] 42% [================= ] 44% [================== ] 47% [=================== ] 50% [==================== ] 52% [===================== ] 55% [====================== ] 57% [======================= ] 60% [======================== ] 63% [========================= ] 65% [========================== ] 68% [=========================== ] 71% [============================ ] 73% [============================= ] 76% [============================== ] 79% [=============================== ] 81% [================================ ] 84% [================================= ] 86% [================================== ] 89% [=================================== ] 92% [==================================== ] 94% [===================================== ] 97% [======================================] 100%Done. 6: Initializing data structure............: Done. 6: Number of distinct sites...............: 1007 6: 96507.2 10: Optimizing... / 1 Optimizing... - 2 Optimizing... \ 3 Optimizing... - 4 Optimizing... / 5 Optimizing... - 6 Optimizing... \ 7 Optimizing... - 8 Optimizing... / 9 Optimizing... - 10 Optimizing... \ 11 Optimizing... - 12 Optimizing... / 13 Optimizing... - 14 Optimizing... \ 15 10: 10: 0.500605 0.530253 10: 0.0204322 0.0219487 10: 0.782413 0.780226 10: 0.542957 0.556433 10: 0.907979 0.904139 10: Detailed check: 1: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.9321 0.8033 1: ..:: Testing with non-homogeneous, stationary model ::.. 6: Analytical total count: 6: 64x64 6: [ 6: [1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00165, 3.00126, 3.00204, 2.00017, 3.00175, 3.00083, 3.00224, 2.00019, 3.00169, 3.00159, 3.00168, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00137, 3.00182, 3.0024, 2.00017, 3.00212, 3.00171, 3.00177, 2.00019, 3.00146, 3.00194, 3.0019, nan, 2.00027, nan, 2.00027, 2.00027, 3.00227, 3.00197, 3.00174, nan, 3.00177, 3.00371, 3.00281, 2.00027, 3.00136, 3.00207, 3.00158] 6: [1.00012, 1.21057e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00019, 1.00012, 2.00019, 2.00023, 3.00231, 2.00023, 3.00241, 3.00239, 3.00155, 2.00023, 3.00165, 3.00124, 3.00157, 2.00023, 3.00183, 3.00142, 2.00019, 1.00012, 2.00019, 2.00023, 3.00129, 2.00023, 3.00157, 3.00156, 3.00159, 2.00023, 3.00166, 3.00081, 3.0018, 2.00023, 3.00173, 3.00207, nan, 1.00012, nan, 2.00015, 3.00161, 2.00023, 3.00143, 3.00167, nan, 2.00023, 3.00166, 3.00179, 3.00152, 2.00023, 3.00177, 3.00152] 6: [1.00012, 1.00012, 1.076e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00017, 2.00019, 1.00006, 2.00019, 3.00129, 3.00181, 2.00019, 3.00097, 3.00155, 3.0012, 2.00019, 3.00182, 3.00176, 3.00162, 2.00019, 3.0011, 2.00017, 2.00019, 1.00006, 2.00019, 3.00039, 3.00158, 2.00019, 3.00153, 3.00181, 3.001, 2.00019, 3.00149, 3.00168, 3.00135, 2.00019, 3.00172, nan, 2.00027, nan, 2.00027, 3.00165, 3.00068, 2.00031, 3.00099, nan, 3.00191, 2.00031, 3.00107, 3.00124, 3.00151, 2.00031, 3.00182] 6: [1.00012, 1.00012, 1.00012, 1.21057e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00019, 2.00023, 2.00019, 1.00012, 3.00151, 3.00169, 3.00094, 2.00023, 3.00148, 3.00209, 3.00215, 2.00023, 3.00195, 3.00189, 3.00157, 2.00023, 2.00019, 2.00023, 2.00019, 1.00012, 3.00243, 3.00199, 3.00192, 2.00023, 3.00063, 3.00195, 3.00195, 2.00023, 3.00187, 3.00199, 3.00104, 2.00023, nan, 2.00015, nan, 1.00012, 3.00116, 3.00142, 3.00242, 2.00023, nan, 3.00178, 3.00111, 2.00023, 3.00135, 3.00203, 3.00171, 2.00023] 6: [1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00153, 3.00164, 3.00215, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00107, 3.00211, 3.00164, 2.00023, 3.00032, 3.00209, 3.00188, 2.00019, 3.00149, 3.00176, 3.00168, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00131, 3.0016, 3.00224, 2.00023, 3.00164, 3.00253, 3.00115, nan, 3.00154, nan, 3.00147, 1.00012, 2.00023, 2.00023, 2.00023, nan, 3.00154, 3.00163, 3.00166, 2.00015, 3.00161, 3.00129, 3.00238] 6: [2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21054e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 3.0014, 2.00023, 3.00175, 3.00213, 2.00023, 1.00012, 2.00023, 2.00023, 3.00194, 2.00023, 3.00138, 3.00174, 3.00143, 2.00023, 3.00112, 3.00132, 3.00163, 2.00023, 3.00163, 3.00185, 2.00023, 1.00012, 2.00023, 2.00023, 3.00149, 2.00023, 3.00182, 3.00218, 3.00183, 2.00023, 3.00236, 3.00168, nan, 2.00023, nan, 3.0014, 2.00023, 1.00012, 2.00023, 2.00023, nan, 2.00023, 3.00174, 3.00136, 3.00126, 2.00023, 3.00146, 3.00157] 6: [2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 3.00212, 3.00118, 2.00019, 3.00112, 2.00023, 2.00023, 1.00012, 2.00023, 3.00163, 3.00155, 2.00023, 3.00174, 3.00146, 3.00236, 2.00023, 3.00104, 3.00178, 3.00205, 2.00019, 3.00203, 2.00023, 2.00023, 1.00012, 2.00023, 3.0014, 3.00183, 2.00023, 3.00183, 3.00184, 3.00205, 2.00023, 3.00206, nan, 3.00146, nan, 3.00168, 2.00023, 2.00023, 1.00012, 2.00023, nan, 3.00144, 2.00019, 3.00206, 3.00154, 3.00168, 2.00019, 3.00123] 6: [2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21054e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 3.00174, 3.00178, 3.0019, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00188, 3.00207, 3.00138, 2.00023, 3.00138, 3.00159, 3.00179, 2.00023, 3.00145, 3.00148, 3.00147, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00184, 3.00172, 3.0018, 2.00023, 3.00171, 3.00136, 3.00234, 2.00023, nan, 3.00162, nan, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, nan, 3.00157, 3.00166, 2.00023, 3.00169, 3.00198, 3.00167, 2.00023] 6: [1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 2.00017, 3.001, 3.00204, 3.0022, 2.00019, 3.00099, 3.00208, 3.00198, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00102, 3.00129, 3.00182, 2.00017, 3.00101, 3.00246, 3.00156, 2.00019, 3.00211, 3.00155, 3.00151, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00177, 3.00211, 3.0022, nan, 3.00124, nan, 3.00227, 2.00027, 3.00208, 3.00222, 3.00251, nan, 2.00031, 2.00031, 2.00031, 2.00027, 3.00183, 3.00124, 3.00191] 6: [2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21056e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 3.00169, 2.00023, 3.00155, 3.00143, 3.00181, 2.00023, 3.00199, 3.00179, 2.00019, 1.00012, 2.00023, 2.00023, 3.00172, 2.00023, 3.00167, 3.00171, 3.00166, 2.00023, 3.00185, 3.00178, 3.00172, 2.00023, 3.00175, 3.00181, 2.00019, 1.00012, 2.00023, 2.00023, 3.00191, 2.00023, 3.00165, 3.00153, nan, 2.00023, nan, 3.00167, 3.00163, 2.00023, 3.00183, 3.00176, nan, 1.00012, 2.00019, 2.00019, 3.00166, 2.00023, 3.00166, 3.00179] 6: [2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21057e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 3.00143, 3.00177, 2.00019, 3.00219, 3.00075, 3.00163, 2.00023, 3.00119, 2.00019, 2.00023, 1.00012, 2.00023, 3.00181, 3.00222, 2.00023, 3.00184, 3.00169, 3.00166, 2.00019, 3.00177, 3.00199, 3.00195, 2.00023, 3.00158, 2.00019, 2.00023, 1.00012, 2.00023, 3.0017, 3.00183, 2.00023, 3.00151, nan, 3.00152, nan, 3.00148, 3.00144, 3.00163, 2.00019, 3.00179, nan, 2.00019, 1.00012, 2.00019, 3.00152, 3.00173, 2.00019, 3.0019] 6: [2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21056e-07, 2.00023, 2.00023, 2.00023, 1.00012, 3.00204, 3.00189, 3.00167, 2.00023, 3.00231, 3.00223, 3.00288, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00187, 3.00152, 3.00177, 2.00023, 3.00297, 3.00162, 3.00133, 2.00023, 3.00108, 3.00146, 3.00177, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.0013, 3.0013, 3.00201, 2.00023, nan, 3.00113, nan, 2.00023, 3.00182, 3.00199, 3.00131, 2.00023, nan, 2.00019, 2.00019, 1.00012, 3.00146, 3.00102, 3.00143, 2.00023] 6: [1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 2.00019, 3.00185, 3.00141, 3.00172, 2.00023, 3.00122, 3.00157, 3.00012, 2.00019, 3.00192, 3.00237, 3.00186, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00188, 3.00172, 3.00159, 2.00023, 3.00167, 3.00167, 3.00176, 2.00019, 3.00179, 3.00152, 3.0016, 1.00012, 2.00023, 2.00023, 2.00023, nan, 3.00138, nan, 3.00161, 2.00015, 3.00147, 3.00154, 3.00167, nan, 3.00159, 3.00137, 3.00146, 1.00012, 2.00023, 2.00023, 2.00023] 6: [2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21054e-07, 1.00012, 1.00012, 3.00165, 2.00023, 3.00171, 3.00165, 3.00177, 2.00023, 3.00186, 3.00165, 3.00165, 2.00023, 3.00172, 3.00164, 2.00023, 1.00012, 2.00023, 2.00023, 3.00171, 2.00023, 3.0017, 3.00178, 3.00167, 2.00023, 3.00165, 3.00167, 3.00167, 2.00023, 3.00177, 3.00175, 2.00023, 1.00012, 2.00023, 2.00023, nan, 2.00023, nan, 3.00165, 3.00171, 2.00023, 3.00174, 3.00174, nan, 2.00023, 3.0017, 3.00175, 2.00023, 1.00012, 2.00023, 2.00023] 6: [2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 3.00145, 3.00147, 2.00019, 3.00128, 3.00164, 3.00224, 2.00023, 3.00336, 3.00186, 3.00177, 2.00023, 3.00167, 2.00023, 2.00023, 1.00012, 2.00023, 3.00148, 3.00139, 2.00019, 3.0019, 3.00149, 3.002, 2.00023, 3.00196, 3.002, 3.00156, 2.00023, 3.00167, 2.00023, 2.00023, 1.00012, 2.00023, nan, 3.00198, nan, 3.00162, 3.00196, 3.00175, 2.00019, 3.00182, nan, 3.0017, 2.00019, 3.00187, 2.00023, 2.00023, 1.00012, 2.00023] 6: [2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21054e-07, 3.0017, 3.00173, 3.00169, 2.00023, 3.00173, 3.00176, 3.00171, 2.00023, 3.00171, 3.00168, 3.00172, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00167, 3.0017, 3.0017, 2.00023, 3.00172, 3.0017, 3.00175, 2.00023, 3.00169, 3.00175, 3.00173, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, nan, 3.00166, nan, 2.00023, 3.00169, 3.00168, 3.0017, 2.00023, nan, 3.00174, 3.00168, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012] 6: [1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00203, 3.00268, 3.00231, 2.00017, 3.0014, 3.0019, 3.00185, 2.00019, 3.00067, 3.00168, 3.00079, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00204, 3.0018, 3.00112, 2.00017, 3.0021, 3.00135, 3.0021, 2.00019, 3.0019, 3.00204, 3.00181, nan, 2.00027, nan, 2.00027, 2.00027, 3.00119, 3.00122, 3.00176, nan, 3.00142, 3.00106, 3.00126, 2.00027, 3.00192, 3.0015, 3.0019] 6: [2.00019, 1.00012, 2.00019, 2.00023, 3.00094, 2.00023, 3.00185, 3.00193, 3.00174, 2.00023, 3.00177, 3.00198, 3.00161, 2.00023, 3.00193, 3.00217, 1.00012, 1.21057e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00019, 1.00012, 2.00019, 2.00023, 3.00191, 2.00023, 3.00145, 3.00184, 3.00186, 2.00023, 3.00157, 3.00179, 3.00186, 2.00023, 3.00178, 3.00166, nan, 1.00012, nan, 2.00015, 3.0018, 2.00023, 3.00177, 3.0017, nan, 2.00023, 3.00173, 3.00159, 3.0018, 2.00023, 3.00165, 3.00202] 6: [2.00017, 2.00019, 1.00006, 2.00019, 3.00196, 3.00208, 2.00019, 3.00097, 3.00183, 3.00158, 2.00019, 3.0018, 3.0021, 3.00292, 2.00019, 3.0022, 1.00012, 1.00012, 1.076e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00017, 2.00019, 1.00006, 2.00019, 3.00192, 3.00129, 2.00019, 3.00172, 3.00141, 3.00121, 2.00019, 3.00143, 3.00137, 3.00187, 2.00019, 3.00146, nan, 2.00027, nan, 2.00027, 3.00177, 3.00228, 2.00031, 3.00178, nan, 3.00158, 2.00031, 3.00174, 3.00141, 3.0013, 2.00031, 3.00124] 6: [2.00019, 2.00023, 2.00019, 1.00012, 3.0018, 3.00179, 3.0017, 2.00023, 3.00153, 3.00186, 3.00154, 2.00023, 3.00153, 3.00157, 3.00159, 2.00023, 1.00012, 1.00012, 1.00012, 1.21057e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00019, 2.00023, 2.00019, 1.00012, 3.00159, 3.00173, 3.00177, 2.00023, 3.00168, 3.00171, 3.00175, 2.00023, 3.00154, 3.00172, 3.00168, 2.00023, nan, 2.00015, nan, 1.00012, 3.00153, 3.00165, 3.00157, 2.00023, nan, 3.00166, 3.00153, 2.00023, 3.00151, 3.00179, 3.00153, 2.00023] 6: [2.00019, 3.00168, 3.00165, 3.00169, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00167, 3.00164, 3.00171, 2.00023, 3.00223, 3.00196, 3.00164, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00159, 3.00176, 3.00156, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00171, 3.00172, 3.00185, 2.00023, 3.00161, 3.00173, 3.00157, nan, 3.00171, nan, 3.00164, 1.00012, 2.00023, 2.00023, 2.00023, nan, 3.00158, 3.00156, 3.00156, 2.00015, 3.00173, 3.00166, 3.00158] 6: [3.00202, 2.00023, 3.00174, 3.00177, 2.00023, 1.00012, 2.00023, 2.00023, 3.0014, 2.00023, 3.00178, 3.00177, 3.00172, 2.00023, 3.00177, 3.00108, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21054e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 3.00098, 2.00023, 3.00146, 3.00171, 2.00023, 1.00012, 2.00023, 2.00023, 3.00145, 2.00023, 3.00138, 3.00135, 3.00161, 2.00023, 3.00135, 3.00154, nan, 2.00023, nan, 3.00201, 2.00023, 1.00012, 2.00023, 2.00023, nan, 2.00023, 3.00168, 3.00207, 3.00146, 2.00023, 3.00151, 3.001] 6: [3.00166, 3.00175, 2.00019, 3.00167, 2.00023, 2.00023, 1.00012, 2.00023, 3.0017, 3.00165, 2.00023, 3.00169, 3.00171, 3.00175, 2.00023, 3.00162, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 3.00168, 3.00166, 2.00019, 3.00168, 2.00023, 2.00023, 1.00012, 2.00023, 3.00172, 3.00175, 2.00023, 3.00169, 3.00164, 3.00163, 2.00023, 3.00177, nan, 3.00162, nan, 3.00156, 2.00023, 2.00023, 1.00012, 2.00023, nan, 3.00171, 2.00019, 3.00168, 3.00165, 3.00169, 2.00019, 3.00173] 6: [3.00178, 3.00181, 3.0017, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00171, 3.00178, 3.00171, 2.00023, 3.00168, 3.00163, 3.00157, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21054e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 3.00179, 3.00177, 3.00174, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00172, 3.0016, 3.00167, 2.00023, 3.0017, 3.0017, 3.00172, 2.00023, nan, 3.00166, nan, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, nan, 3.00173, 3.00167, 2.00023, 3.00172, 3.00176, 3.00167, 2.00023] 6: [2.00017, 3.00184, 3.00166, 3.00155, 2.00019, 3.00159, 3.00155, 3.00231, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00226, 3.00144, 3.00149, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 2.00017, 3.00177, 3.00205, 3.00166, 2.00019, 3.00145, 3.00169, 3.0023, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00193, 3.00145, 3.00165, nan, 3.00155, nan, 3.00236, 2.00027, 3.00095, 3.00121, 3.00154, nan, 2.00031, 2.00031, 2.00031, 2.00027, 3.00148, 3.0018, 3.00142] 6: [3.0015, 2.00023, 3.00157, 3.00223, 3.00225, 2.00023, 3.00186, 3.00105, 2.00019, 1.00012, 2.00023, 2.00023, 3.00205, 2.00023, 3.00182, 3.00221, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21056e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 3.00141, 2.00023, 3.00134, 3.00127, 3.0027, 2.00023, 3.00136, 3.00122, 2.00019, 1.00012, 2.00023, 2.00023, 3.00158, 2.00023, 3.00159, 3.00157, nan, 2.00023, nan, 3.00074, 3.00139, 2.00023, 3.00166, 3.00161, nan, 1.00012, 2.00019, 2.00019, 3.00173, 2.00023, 3.00146, 3.00181] 6: [3.00163, 3.00181, 2.00019, 3.00181, 3.00156, 3.00159, 2.00023, 3.00166, 2.00019, 2.00023, 1.00012, 2.00023, 3.00159, 3.00197, 2.00023, 3.00193, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21057e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 3.00155, 3.00157, 2.00019, 3.00181, 3.00145, 3.00169, 2.00023, 3.00166, 2.00019, 2.00023, 1.00012, 2.00023, 3.00151, 3.00169, 2.00023, 3.00163, nan, 3.00165, nan, 3.00156, 3.00158, 3.00191, 2.00019, 3.00179, nan, 2.00019, 1.00012, 2.00019, 3.00144, 3.00153, 2.00019, 3.00189] 6: [3.00206, 3.00126, 3.00198, 2.00023, 3.00165, 3.00142, 3.00183, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00199, 3.00151, 3.00185, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21056e-07, 2.00023, 2.00023, 2.00023, 1.00012, 3.0017, 3.00149, 3.00189, 2.00023, 3.00167, 3.00198, 3.00187, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00176, 3.00161, 3.00157, 2.00023, nan, 3.00158, nan, 2.00023, 3.00218, 3.00178, 3.00192, 2.00023, nan, 2.00019, 2.00019, 1.00012, 3.00156, 3.00165, 3.0016, 2.00023] 6: [2.00019, 3.00175, 3.00186, 3.00175, 2.00023, 3.00177, 3.00121, 3.00117, 2.00019, 3.00118, 3.00171, 3.00165, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 2.00019, 3.00179, 3.00172, 3.00215, 2.00023, 3.00128, 3.00136, 3.00143, 2.00019, 3.00106, 3.00183, 3.00105, 1.00012, 2.00023, 2.00023, 2.00023, nan, 3.00151, nan, 3.0012, 2.00015, 3.00276, 3.00203, 3.00183, nan, 3.00184, 3.00204, 3.00203, 1.00012, 2.00023, 2.00023, 2.00023] 6: [3.00177, 2.00023, 3.0015, 3.00148, 3.00164, 2.00023, 3.00161, 3.00142, 3.00165, 2.00023, 3.00157, 3.00184, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21054e-07, 1.00012, 1.00012, 3.00163, 2.00023, 3.00165, 3.0015, 3.00173, 2.00023, 3.00172, 3.00166, 3.00157, 2.00023, 3.00173, 3.00173, 2.00023, 1.00012, 2.00023, 2.00023, nan, 2.00023, nan, 3.00176, 3.00168, 2.00023, 3.00169, 3.00163, nan, 2.00023, 3.00154, 3.00175, 2.00023, 1.00012, 2.00023, 2.00023] 6: [3.00169, 3.00159, 2.00019, 3.00142, 3.00128, 3.00147, 2.00023, 3.00263, 3.00108, 3.00175, 2.00023, 3.00144, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 3.00102, 3.0016, 2.00019, 3.00122, 3.00159, 3.00223, 2.00023, 3.0018, 3.00132, 3.00257, 2.00023, 3.00225, 2.00023, 2.00023, 1.00012, 2.00023, nan, 3.00208, nan, 3.00216, 3.00148, 3.00098, 2.00019, 3.0017, nan, 3.00184, 2.00019, 3.00139, 2.00023, 2.00023, 1.00012, 2.00023] 6: [3.00167, 3.00161, 3.00173, 2.00023, 3.00177, 3.00167, 3.00152, 2.00023, 3.00169, 3.00156, 3.00178, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21054e-07, 3.00157, 3.00167, 3.00161, 2.00023, 3.00157, 3.0015, 3.00172, 2.00023, 3.00173, 3.00165, 3.00175, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, nan, 3.00158, nan, 2.00023, 3.00155, 3.00167, 3.00157, 2.00023, nan, 3.00151, 3.00173, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012] 6: [1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00159, 3.00179, 3.00185, 2.00017, 3.00175, 3.0018, 3.0016, 2.00019, 3.00129, 3.00168, 3.00161, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00156, 3.00156, 3.0017, 2.00017, 3.00161, 3.00169, 3.00181, 2.00019, 3.00158, 3.00174, 3.00176, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, nan, 2.00027, nan, 2.00027, 2.00027, 3.00163, 3.00136, 3.00168, nan, 3.00177, 3.00126, 3.00161, 2.00027, 3.0015, 3.00137, 3.0017] 6: [2.00019, 1.00012, 2.00019, 2.00023, 3.0027, 2.00023, 3.00218, 3.00217, 3.002, 2.00023, 3.00106, 3.00175, 3.00128, 2.00023, 3.00135, 3.00113, 2.00019, 1.00012, 2.00019, 2.00023, 3.00025, 2.00023, 3.00172, 3.00189, 3.0019, 2.00023, 3.00204, 3.00224, 3.00203, 2.00023, 3.00138, 3.00118, 1.00012, 1.21057e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, nan, 1.00012, nan, 2.00015, 2.9997, 2.00023, 3.00131, 3.00181, nan, 2.00023, 3.00163, 3.00197, 3.00327, 2.00023, 3.00142, 3.0016] 6: [2.00017, 2.00019, 1.00006, 2.00019, 3.00186, 3.00219, 2.00019, 3.00166, 3.00208, 3.00207, 2.00019, 3.00218, 3.00168, 3.00159, 2.00019, 3.00242, 2.00017, 2.00019, 1.00006, 2.00019, 3.00095, 3.00148, 2.00019, 3.00137, 3.00175, 3.00208, 2.00019, 3.00189, 3.00157, 3.00101, 2.00019, 3.00162, 1.00012, 1.00012, 1.076e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, nan, 2.00027, nan, 2.00027, 3.00109, 3.00102, 2.00031, 3.00175, nan, 3.00154, 2.00031, 3.00185, 3.00145, 3.00222, 2.00031, 3.00215] 6: [2.00019, 2.00023, 2.00019, 1.00012, 3.00086, 3.00091, 3.00069, 2.00023, 3.00179, 3.00104, 3.00187, 2.00023, 3.00143, 3.00279, 3.0022, 2.00023, 2.00019, 2.00023, 2.00019, 1.00012, 3.00244, 3.00161, 3.0019, 2.00023, 3.00218, 3.00191, 3.00155, 2.00023, 3.00084, 3.00128, 3.00207, 2.00023, 1.00012, 1.00012, 1.00012, 1.21057e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, nan, 2.00015, nan, 1.00012, 3.00265, 3.00094, 3.00217, 2.00023, nan, 3.00142, 3.00152, 2.00023, 3.00109, 3.00087, 3.00226, 2.00023] 6: [2.00019, 3.00173, 3.0017, 3.00173, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00187, 3.00167, 3.00162, 2.00023, 3.00163, 3.00138, 3.00141, 2.00019, 3.00213, 3.00156, 3.00207, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00208, 3.00163, 3.00155, 2.00023, 3.00259, 3.00206, 3.00187, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, nan, 3.00151, nan, 3.0013, 1.00012, 2.00023, 2.00023, 2.00023, nan, 3.00168, 3.00125, 3.00142, 2.00015, 3.00159, 3.00188, 3.00157] 6: [3.00153, 2.00023, 3.00149, 3.00208, 2.00023, 1.00012, 2.00023, 2.00023, 3.00191, 2.00023, 3.00201, 3.00221, 3.00224, 2.00023, 3.00219, 3.00336, 3.00208, 2.00023, 3.00166, 3.00176, 2.00023, 1.00012, 2.00023, 2.00023, 3.00145, 2.00023, 3.00159, 3.00138, 3.00146, 2.00023, 3.00136, 3.00201, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21054e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, nan, 2.00023, nan, 3.00089, 2.00023, 1.00012, 2.00023, 2.00023, nan, 2.00023, 3.00157, 3.00157, 3.00143, 2.00023, 3.00159, 3.00124] 6: [3.00204, 3.00161, 2.00019, 3.00094, 2.00023, 2.00023, 1.00012, 2.00023, 3.00141, 3.00177, 2.00023, 3.00145, 3.00271, 3.00172, 2.00023, 3.00153, 3.00148, 3.00188, 2.00019, 3.00191, 2.00023, 2.00023, 1.00012, 2.00023, 3.00193, 3.00215, 2.00023, 3.00167, 3.00201, 3.00152, 2.00023, 3.00187, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, nan, 3.00159, nan, 3.00116, 2.00023, 2.00023, 1.00012, 2.00023, nan, 3.00167, 2.00019, 3.0012, 3.00137, 3.00147, 2.00019, 3.00173] 6: [3.00176, 3.00225, 3.0021, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00145, 3.00197, 3.0014, 2.00023, 3.00115, 3.0013, 3.00154, 2.00023, 3.00137, 3.00143, 3.00158, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00131, 3.00169, 3.00134, 2.00023, 3.00209, 3.00189, 3.00153, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21054e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, nan, 3.00181, nan, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, nan, 3.00177, 3.00147, 2.00023, 3.00138, 3.00169, 3.00189, 2.00023] 6: [2.00017, 3.00166, 3.0015, 3.00169, 2.00019, 3.00157, 3.00156, 3.00113, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00069, 3.00186, 3.003, 2.00017, 3.00133, 3.00147, 3.00197, 2.00019, 3.0021, 3.00151, 3.00145, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00218, 3.00173, 3.00162, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, nan, 3.00053, nan, 3.00199, 2.00027, 3.00088, 3.0006, 3.00121, nan, 2.00031, 2.00031, 2.00031, 2.00027, 3.0018, 3.00118, 3.00177] 6: [3.00163, 2.00023, 3.00169, 3.00107, 3.00137, 2.00023, 3.00169, 3.00183, 2.00019, 1.00012, 2.00023, 2.00023, 3.00155, 2.00023, 3.00173, 3.00124, 3.00141, 2.00023, 3.00212, 3.00202, 3.00104, 2.00023, 3.00155, 3.00112, 2.00019, 1.00012, 2.00023, 2.00023, 3.00159, 2.00023, 3.00168, 3.00218, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21056e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, nan, 2.00023, nan, 3.00176, 3.00183, 2.00023, 3.00174, 3.00204, nan, 1.00012, 2.00019, 2.00019, 3.00146, 2.00023, 3.00161, 3.0017] 6: [3.00083, 3.00177, 2.00019, 3.00208, 3.00186, 3.00202, 2.00023, 3.00169, 2.00019, 2.00023, 1.00012, 2.00023, 3.00133, 3.00155, 2.00023, 3.00131, 3.00172, 3.0019, 2.00019, 3.00042, 3.00222, 3.00184, 2.00023, 3.002, 2.00019, 2.00023, 1.00012, 2.00023, 3.00181, 3.00182, 2.00023, 3.00088, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21057e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, nan, 3.00171, nan, 3.00166, 3.00096, 3.00169, 2.00019, 3.00184, nan, 2.00019, 1.00012, 2.00019, 3.00156, 3.00158, 2.00019, 3.00133] 6: [3.00182, 3.00172, 3.00168, 2.00023, 3.00183, 3.00183, 3.00172, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00179, 3.00204, 3.00185, 2.00023, 3.00194, 3.00193, 3.00182, 2.00023, 3.00167, 3.00183, 3.00173, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00174, 3.00207, 3.00179, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21056e-07, 2.00023, 2.00023, 2.00023, 1.00012, nan, 3.00176, nan, 2.00023, 3.00137, 3.00183, 3.00166, 2.00023, nan, 2.00019, 2.00019, 1.00012, 3.00178, 3.00183, 3.00161, 2.00023] 6: [2.00019, 3.00156, 3.00146, 3.00136, 2.00023, 3.00181, 3.00152, 3.00165, 2.00019, 3.00125, 3.00127, 3.00171, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.0014, 3.00193, 3.00118, 2.00023, 3.0015, 3.00152, 3.00141, 2.00019, 3.00117, 3.00179, 3.00204, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, nan, 3.00159, nan, 3.00144, 2.00015, 3.00175, 3.00104, 3.00157, nan, 3.0014, 3.00152, 3.00173, 1.00012, 2.00023, 2.00023, 2.00023] 6: [3.00212, 2.00023, 3.00186, 3.00203, 3.00216, 2.00023, 3.00219, 3.00204, 3.00117, 2.00023, 3.00187, 3.00178, 2.00023, 1.00012, 2.00023, 2.00023, 3.00147, 2.00023, 3.00109, 3.00195, 3.00271, 2.00023, 3.00205, 3.00245, 3.00162, 2.00023, 3.00146, 3.00175, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21054e-07, 1.00012, 1.00012, nan, 2.00023, nan, 3.00159, 3.0017, 2.00023, 3.00155, 3.00185, nan, 2.00023, 3.00102, 3.00154, 2.00023, 1.00012, 2.00023, 2.00023] 6: [3.00165, 3.00177, 2.00019, 3.00165, 3.00177, 3.0018, 2.00023, 3.00174, 3.00189, 3.00177, 2.00023, 3.00163, 2.00023, 2.00023, 1.00012, 2.00023, 3.00174, 3.00179, 2.00019, 3.0018, 3.00156, 3.00145, 2.00023, 3.00112, 3.00158, 3.00183, 2.00023, 3.00169, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, nan, 3.00162, nan, 3.00165, 3.00155, 3.00187, 2.00019, 3.00175, nan, 3.00175, 2.00019, 3.00166, 2.00023, 2.00023, 1.00012, 2.00023] 6: [3.0017, 3.00171, 3.00164, 2.00023, 3.00161, 3.00177, 3.00176, 2.00023, 3.00165, 3.00176, 3.00173, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00176, 3.00175, 3.00174, 2.00023, 3.0015, 3.0016, 3.00187, 2.00023, 3.00177, 3.00161, 3.00165, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21054e-07, nan, 3.00172, nan, 2.00023, 3.00172, 3.00177, 3.00172, 2.00023, nan, 3.00172, 3.00167, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012] 6: [nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, 0, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan] 6: [2.00027, 1.00012, 2.00027, 2.00015, 3.00191, 2.00023, 3.00186, 3.00186, 3.00171, 2.00023, 3.00187, 3.002, 3.00187, 2.00023, 3.00178, 3.00198, 2.00027, 1.00012, 2.00027, 2.00015, 3.00268, 2.00023, 3.00121, 3.00166, 3.00187, 2.00023, 3.00166, 3.00155, 3.00167, 2.00023, 3.00175, 3.00199, 2.00027, 1.00012, 2.00027, 2.00015, 3.00168, 2.00023, 3.00156, 3.00187, 3.00141, 2.00023, 3.0014, 3.00144, 3.00138, 2.00023, 3.00153, 3.00196, nan, 9.41462e-08, nan, 1, 2.00023, 1.00012, 2.00027, 2.00015, nan, 1.00012, 2.00023, 2.00013, 2.00023, 1.00012, 2.00027, 2.00015] 6: [nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, 0, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan] 6: [2.00027, 2.00015, 2.00027, 1.00012, 3.00092, 3.00224, 3.00178, 2.00023, 3.00191, 3.00195, 3.00138, 2.00023, 3.00196, 3.00257, 3.00162, 2.00023, 2.00027, 2.00015, 2.00027, 1.00012, 3.00098, 3.00225, 3.00252, 2.00023, 3.00164, 3.00168, 3.00133, 2.00023, 3.00184, 3.00192, 3.00132, 2.00023, 2.00027, 2.00015, 2.00027, 1.00012, 3.00127, 3.00241, 3.00197, 2.00023, 3.00236, 3.00165, 3.00105, 2.00023, 3.0016, 3.00201, 3.00172, 2.00023, nan, 1, nan, 9.41462e-08, 2.00023, 2.00015, 2.00027, 1.00012, nan, 2.00013, 2.00023, 1.00012, 2.00023, 2.00015, 2.00027, 1.00012] 6: [2.00027, 3.00134, 3.00155, 3.00153, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00136, 3.00178, 3.00182, 2.00015, 3.00191, 3.00154, 3.00164, 2.00027, 3.00122, 3.00183, 3.00115, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.0015, 3.00149, 3.00132, 2.00015, 3.00184, 3.0016, 3.00128, 2.00027, 3.00115, 3.00149, 3.00174, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00171, 3.00179, 3.0011, 2.00015, 3.00154, 3.00156, 3.00187, nan, 2.00023, nan, 2.00023, 9.41462e-08, 1.00012, 1.00012, 1.00012, nan, 2.00027, 2.00023, 2.00027, 1, 2.00015, 2.00013, 2.00015] 6: [3.00174, 2.00023, 3.00157, 3.00145, 2.00023, 1.00012, 2.00023, 2.00023, 3.00152, 2.00023, 3.00161, 3.00171, 3.00187, 2.00023, 3.00158, 3.00098, 3.00149, 2.00023, 3.0014, 3.00163, 2.00023, 1.00012, 2.00023, 2.00023, 3.00165, 2.00023, 3.00187, 3.00177, 3.00177, 2.00023, 3.00183, 3.00217, 3.00164, 2.00023, 3.00158, 3.00162, 2.00023, 1.00012, 2.00023, 2.00023, 3.00156, 2.00023, 3.00171, 3.00169, 3.00171, 2.00023, 3.00187, 3.00164, nan, 1.00012, nan, 2.00015, 1.00012, 1.21058e-07, 1.00012, 1.00012, nan, 1.00012, 2.00015, 2.00019, 2.00015, 1.00012, 2.00019, 2.00023] 6: [3.00145, 3.00081, 2.00031, 3.0017, 2.00023, 2.00023, 1.00012, 2.00023, 3.00118, 3.00132, 2.00019, 3.00176, 3.00093, 3.00076, 2.00019, 3.00176, 3.00088, 3.00235, 2.00031, 3.00164, 2.00023, 2.00023, 1.00012, 2.00023, 3.00144, 3.00191, 2.00019, 3.00164, 3.00179, 3.00142, 2.00019, 3.00208, 3.00129, 3.00156, 2.00031, 3.00121, 2.00023, 2.00023, 1.00012, 2.00023, 3.00199, 3.00177, 2.00019, 3.0018, 3.00165, 3.00174, 2.00019, 3.00121, nan, 2.00027, nan, 2.00027, 1.00012, 1.00012, 1.07601e-07, 1.00012, nan, 2.00015, 1.00006, 2.00015, 2.00013, 2.00019, 1.00006, 2.00019] 6: [3.00098, 3.00191, 3.00147, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00132, 3.00163, 3.00185, 2.00023, 3.00229, 3.00085, 3.00211, 2.00023, 3.00201, 3.00197, 3.00136, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00164, 3.00133, 3.00183, 2.00023, 3.00165, 3.00145, 3.00165, 2.00023, 3.0016, 3.0017, 3.00167, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00176, 3.0011, 3.00151, 2.00023, 3.00178, 3.00171, 3.0019, 2.00023, nan, 2.00015, nan, 1.00012, 1.00012, 1.00012, 1.00012, 1.21058e-07, nan, 2.00019, 2.00015, 1.00012, 2.00015, 2.00023, 2.00019, 1.00012] 6: [nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, 0, nan, nan, nan, nan, nan, nan, nan] 6: [3.00189, 2.00023, 3.00169, 3.00192, 3.00149, 2.00023, 3.00173, 3.00204, 2.00031, 1.00012, 2.00019, 2.00019, 3.00171, 2.00023, 3.0017, 3.00192, 3.00121, 2.00023, 3.00145, 3.00164, 3.00081, 2.00023, 3.00186, 3.00192, 2.00031, 1.00012, 2.00019, 2.00019, 3.00188, 2.00023, 3.00164, 3.0012, 3.0024, 2.00023, 3.00202, 3.00189, 3.00099, 2.00023, 3.00156, 3.00176, 2.00031, 1.00012, 2.00019, 2.00019, 3.00181, 2.00023, 3.00141, 3.00187, nan, 1.00012, nan, 2.00013, 2.00027, 1.00012, 2.00015, 2.00019, nan, 1.07601e-07, 1.00006, 1.00006, 2.00027, 1.00012, 2.00015, 2.00019] 6: [3.00056, 3.00191, 2.00031, 3.00129, 3.00083, 3.00195, 2.00019, 3.00148, 2.00031, 2.00019, 1.00012, 2.00019, 3.0017, 3.00243, 2.00019, 3.00086, 3.00182, 3.00123, 2.00031, 3.00154, 3.00109, 3.00186, 2.00019, 3.0015, 2.00031, 2.00019, 1.00012, 2.00019, 3.0013, 3.0018, 2.00019, 3.0018, 3.00096, 3.00196, 2.00031, 3.00169, 3.00021, 3.00191, 2.00019, 3.00178, 2.00031, 2.00019, 1.00012, 2.00019, 3.00178, 3.00221, 2.00019, 3.00175, nan, 2.00023, nan, 2.00023, 2.00023, 2.00015, 1.00006, 2.00015, nan, 1.00006, 9.41452e-08, 1.00006, 2.00023, 2.00015, 1.00006, 2.00015] 6: [3.00189, 3.00157, 3.00152, 2.00023, 3.00216, 3.00143, 3.00213, 2.00023, 2.00031, 2.00019, 2.00019, 1.00012, 3.00051, 3.00161, 3.00185, 2.00023, 3.00132, 3.00173, 3.00204, 2.00023, 3.00226, 3.00115, 3.00101, 2.00023, 2.00031, 2.00019, 2.00019, 1.00012, 3.00139, 3.00149, 3.00168, 2.00023, 2.99895, 3.00138, 3.00153, 2.00023, 3.00273, 3.00139, 3.00099, 2.00023, 2.00031, 2.00019, 2.00019, 1.00012, 3.00155, 3.00131, 3.00124, 2.00023, nan, 2.00013, nan, 1.00012, 2.00027, 2.00019, 2.00015, 1.00012, nan, 1.00006, 1.00006, 1.07601e-07, 2.00027, 2.00019, 2.00015, 1.00012] 6: [2.00027, 3.00153, 3.00097, 3.00196, 2.00015, 3.00181, 3.0019, 3.00231, 2.00027, 3.0017, 3.00154, 3.00175, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00133, 3.00048, 3.00134, 2.00015, 3.00168, 3.00138, 3.00174, 2.00027, 3.00162, 3.00183, 3.00148, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00162, 3.00093, 3.00127, 2.00015, 3.00182, 3.00282, 3.00173, 2.00027, 3.00118, 3.00167, 3.00116, 1.00012, 2.00023, 2.00023, 2.00023, nan, 2.00023, nan, 2.00023, 1, 2.00015, 2.00013, 2.00015, nan, 2.00027, 2.00023, 2.00027, 9.41462e-08, 1.00012, 1.00012, 1.00012] 6: [3.00115, 2.00023, 3.00158, 3.00143, 3.0012, 2.00023, 3.00201, 3.00148, 3.00187, 2.00023, 3.00167, 3.00133, 2.00023, 1.00012, 2.00023, 2.00023, 3.00176, 2.00023, 3.00228, 3.00167, 3.00147, 2.00023, 3.00243, 3.00211, 3.00139, 2.00023, 3.00123, 3.00189, 2.00023, 1.00012, 2.00023, 2.00023, 3.00129, 2.00023, 3.00114, 3.00159, 3.00166, 2.00023, 3.00184, 3.00139, 3.00145, 2.00023, 3.00139, 3.00162, 2.00023, 1.00012, 2.00023, 2.00023, nan, 1.00012, nan, 2.00015, 2.00015, 1.00012, 2.00019, 2.00023, nan, 1.00012, 2.00015, 2.00019, 1.00012, 1.21058e-07, 1.00012, 1.00012] 6: [3.00114, 3.00116, 2.00031, 3.00143, 3.00229, 3.00138, 2.00019, 3.00142, 3.00171, 3.00225, 2.00019, 3.00176, 2.00023, 2.00023, 1.00012, 2.00023, 3.00207, 3.00098, 2.00031, 3.00148, 3.0022, 3.00117, 2.00019, 3.00193, 3.00102, 3.00177, 2.00019, 3.00138, 2.00023, 2.00023, 1.00012, 2.00023, 3.00283, 3.00145, 2.00031, 3.00158, 3.00188, 3.0013, 2.00019, 3.00153, 3.00114, 3.00144, 2.00019, 3.00214, 2.00023, 2.00023, 1.00012, 2.00023, nan, 2.00027, nan, 2.00027, 2.00013, 2.00019, 1.00006, 2.00019, nan, 2.00015, 1.00006, 2.00015, 1.00012, 1.00012, 1.07601e-07, 1.00012] 6: [3.00169, 3.00145, 3.00139, 2.00023, 3.00149, 3.00181, 3.00139, 2.00023, 3.00136, 3.0016, 3.00152, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00144, 3.0014, 3.00135, 2.00023, 3.00092, 3.00161, 3.00111, 2.00023, 3.00164, 3.00171, 3.0018, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00157, 3.00128, 3.00143, 2.00023, 3.00155, 3.0017, 3.00158, 2.00023, 3.00136, 3.0013, 3.00154, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, nan, 2.00015, nan, 1.00012, 2.00015, 2.00023, 2.00019, 1.00012, nan, 2.00019, 2.00015, 1.00012, 1.00012, 1.00012, 1.00012, 1.21058e-07] 6: ] 6: Compute joint node-pairs likelihood....: 10: Initializing data structure............: Done. 10: Number of distinct sites...............: 188 6: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 6: Simple total count: 6: 64x64 6: [ 6: [0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1] 6: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0] 6: ] 6: Compute joint node-pairs likelihood....: 6: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 6: Detailed count, type 1: 6: 64x64 6: [ 6: [0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0] 6: ] 6: Compute joint node-pairs likelihood....: 1: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0401 0.0069 11/13 Test #1: test_bowker ...................... Passed 35.11 sec 6: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 6: Total count, uniformization method: 6: 64x64 6: [ 6: [1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00028, 2.9999, 3.00066, 2.00017, 3.00039, 2.99949, 3.00088, 2.00019, 3.00031, 3.00023, 3.0003, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 2.99999, 3.00045, 3.00102, 2.00017, 3.00076, 3.00037, 3.00041, 2.00019, 3.00008, 3.00058, 3.00052, 0, 2.00027, 0, 2.00027, 2.00027, 3.00104, 3.00087, 3.00051, 0, 3.00067, 3.00283, 3.00171, 2.00027, 3.00013, 3.00097, 3.00035] 6: [1.00012, 1.21057e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00019, 1.00012, 2.00019, 2.00023, 3.00094, 2.00023, 3.00104, 3.00102, 3.00019, 2.00023, 3.00028, 2.99987, 3.0002, 2.00023, 3.00046, 3.00005, 2.00019, 1.00012, 2.00019, 2.00023, 2.99992, 2.00023, 3.0002, 3.00019, 3.00023, 2.00023, 3.00029, 2.99944, 3.00043, 2.00023, 3.00036, 3.0007, 0, 1.00012, 0, 2.00015, 3.00037, 2.00023, 3.00022, 3.0003, 0, 2.00023, 3.00045, 3.00043, 3.00028, 2.00023, 3.00056, 3.00015] 6: [1.00012, 1.00012, 1.076e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00017, 2.00019, 1.00006, 2.00019, 2.99993, 3.00043, 2.00019, 2.99959, 3.00021, 2.99982, 2.00019, 3.00044, 3.00039, 3.00024, 2.00019, 2.99972, 2.00017, 2.00019, 1.00006, 2.00019, 2.99903, 3.0002, 2.00019, 3.00016, 3.00047, 2.99962, 2.00019, 3.00011, 3.00032, 2.99997, 2.00019, 3.00034, 0, 2.00027, 0, 2.00027, 3.00054, 2.99947, 2.00031, 2.99978, 0, 3.0007, 2.00031, 2.99986, 3.00013, 3.0003, 2.00031, 3.00061] 6: [1.00012, 1.00012, 1.00012, 1.21057e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00019, 2.00023, 2.00019, 1.00012, 3.00014, 3.00032, 2.99957, 2.00023, 3.00012, 3.00072, 3.00078, 2.00023, 3.00058, 3.00052, 3.0002, 2.00023, 2.00019, 2.00023, 2.00019, 1.00012, 3.00106, 3.00062, 3.00055, 2.00023, 2.99927, 3.00058, 3.00058, 2.00023, 3.0005, 3.00062, 2.99968, 2.00023, 0, 2.00015, 0, 1.00012, 2.99992, 3.00005, 3.00121, 2.00023, 0, 3.00042, 2.9999, 2.00023, 3.00011, 3.00066, 3.0005, 2.00023] 6: [1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00016, 3.00028, 3.00078, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 2.9997, 3.00074, 3.00027, 2.00023, 2.99895, 3.00072, 3.00051, 2.00019, 3.00012, 3.00039, 3.00031, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 2.99994, 3.00023, 3.00087, 2.00023, 3.00027, 3.00116, 2.99978, 0, 3.0003, 0, 3.00023, 1.00012, 2.00023, 2.00023, 2.00023, 0, 3.00033, 3.00042, 3.00045, 2.00015, 3.00024, 2.99993, 3.00101] 6: [2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21055e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 3.00002, 2.00023, 3.00037, 3.00076, 2.00023, 1.00012, 2.00023, 2.00023, 3.00056, 2.00023, 3.00001, 3.00037, 3.00006, 2.00023, 2.99975, 2.99995, 3.00026, 2.00023, 3.00026, 3.00048, 2.00023, 1.00012, 2.00023, 2.00023, 3.00011, 2.00023, 3.00045, 3.00081, 3.00046, 2.00023, 3.00099, 3.00031, 0, 2.00023, 0, 3.00001, 2.00023, 1.00012, 2.00023, 2.00023, 0, 2.00023, 3.00035, 2.99998, 2.99987, 2.00023, 3.00008, 3.0002] 6: [2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 3.00076, 2.99981, 2.00019, 2.99976, 2.00023, 2.00023, 1.00012, 2.00023, 3.00025, 3.00018, 2.00023, 3.00037, 3.0001, 3.00099, 2.00023, 2.99967, 3.00042, 3.00068, 2.00019, 3.00066, 2.00023, 2.00023, 1.00012, 2.00023, 3.00002, 3.00046, 2.00023, 3.00046, 3.00047, 3.00068, 2.00023, 3.00069, 0, 3.00023, 0, 3.00046, 2.00023, 2.00023, 1.00012, 2.00023, 0, 3.00006, 2.00019, 3.00068, 3.00017, 3.00031, 2.00019, 2.99986] 6: [2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21055e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 3.00036, 3.00041, 3.00052, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.0005, 3.0007, 3.00001, 2.00023, 3.00001, 3.00022, 3.00042, 2.00023, 3.00007, 3.00011, 3.00009, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00046, 3.00035, 3.00043, 2.00023, 3.00034, 2.99999, 3.00097, 2.00023, 0, 3.00023, 0, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 0, 3.00019, 3.00027, 2.00023, 3.0003, 3.00061, 3.0003, 2.00023] 6: [1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 2.00017, 2.99964, 3.0007, 3.00084, 2.00019, 2.99961, 3.0007, 3.0006, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 2.99964, 2.99991, 3.00044, 2.00017, 2.99965, 3.00112, 3.0002, 2.00019, 3.00073, 3.00018, 3.00014, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00039, 3.00073, 3.00082, 0, 3.00013, 0, 3.00116, 2.00027, 3.00087, 3.00101, 3.0013, 0, 2.00031, 2.00031, 2.00031, 2.00027, 3.00062, 3.00003, 3.0007] 6: [2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21056e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 3.00033, 2.00023, 3.00018, 3.00006, 3.00044, 2.00023, 3.00062, 3.00042, 2.00019, 1.00012, 2.00023, 2.00023, 3.00035, 2.00023, 3.0003, 3.00034, 3.0003, 2.00023, 3.00047, 3.00041, 3.00035, 2.00023, 3.00038, 3.00044, 2.00019, 1.00012, 2.00023, 2.00023, 3.00054, 2.00023, 3.00028, 3.00016, 0, 2.00023, 0, 3.0003, 3.00041, 2.00023, 3.00045, 3.00039, 0, 1.00012, 2.00019, 2.00019, 3.00044, 2.00023, 3.00028, 3.00042] 6: [2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21057e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 3.00009, 3.0004, 2.00019, 3.00082, 2.99938, 3.00026, 2.00023, 2.99982, 2.00019, 2.00023, 1.00012, 2.00023, 3.00044, 3.00085, 2.00023, 3.00047, 3.00035, 3.00029, 2.00019, 3.0004, 3.00062, 3.00058, 2.00023, 3.00021, 2.00019, 2.00023, 1.00012, 2.00023, 3.00033, 3.00046, 2.00023, 3.00014, 0, 3.00031, 0, 3.00027, 3.00023, 3.00026, 2.00019, 3.00042, 0, 2.00019, 1.00012, 2.00019, 3.00031, 3.00036, 2.00019, 3.00053] 6: [2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21056e-07, 2.00023, 2.00023, 2.00023, 1.00012, 3.00068, 3.00052, 3.0003, 2.00023, 3.00094, 3.00086, 3.00151, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.0005, 3.00016, 3.0004, 2.00023, 3.0016, 3.00025, 2.99995, 2.00023, 2.99971, 3.00009, 3.0004, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 2.99993, 2.99993, 3.00064, 2.00023, 0, 2.99976, 0, 2.00023, 3.0006, 3.00062, 2.99994, 2.00023, 0, 2.00019, 2.00019, 1.00012, 3.00023, 2.99965, 3.00005, 2.00023] 6: [1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 2.00019, 3.00048, 3.00005, 3.00035, 2.00023, 2.99985, 3.0002, 2.99875, 2.00019, 3.00055, 3.001, 3.00049, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00051, 3.00035, 3.00022, 2.00023, 3.0003, 3.0003, 3.00039, 2.00019, 3.00042, 3.00015, 3.00023, 1.00012, 2.00023, 2.00023, 2.00023, 0, 3.00014, 0, 3.00037, 2.00015, 3.0001, 3.00018, 3.0003, 0, 3.00038, 3.00016, 3.00025, 1.00012, 2.00023, 2.00023, 2.00023] 6: [2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21055e-07, 1.00012, 1.00012, 3.00028, 2.00023, 3.00033, 3.00028, 3.0004, 2.00023, 3.00049, 3.00028, 3.00028, 2.00023, 3.00035, 3.00027, 2.00023, 1.00012, 2.00023, 2.00023, 3.00033, 2.00023, 3.00032, 3.00041, 3.0003, 2.00023, 3.00028, 3.0003, 3.0003, 2.00023, 3.0004, 3.00038, 2.00023, 1.00012, 2.00023, 2.00023, 0, 2.00023, 0, 3.00026, 3.00032, 2.00023, 3.00036, 3.00037, 0, 2.00023, 3.00031, 3.00037, 2.00023, 1.00012, 2.00023, 2.00023] 6: [2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 3.00009, 3.0001, 2.00019, 2.99991, 3.00027, 3.00087, 2.00023, 3.00199, 3.00048, 3.0004, 2.00023, 3.0003, 2.00023, 2.00023, 1.00012, 2.00023, 3.00012, 3.00002, 2.00019, 3.00053, 3.00012, 3.00063, 2.00023, 3.00059, 3.00062, 3.00019, 2.00023, 3.0003, 2.00023, 2.00023, 1.00012, 2.00023, 0, 3.00076, 0, 3.0004, 3.00059, 3.00038, 2.00019, 3.00045, 0, 3.00032, 2.00019, 3.00049, 2.00023, 2.00023, 1.00012, 2.00023] 6: [2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21055e-07, 3.00032, 3.00036, 3.00032, 2.00023, 3.00036, 3.00039, 3.00034, 2.00023, 3.00033, 3.00031, 3.00035, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.0003, 3.00033, 3.00032, 2.00023, 3.00035, 3.00033, 3.00038, 2.00023, 3.00032, 3.00038, 3.00036, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 0, 3.00028, 0, 2.00023, 3.0003, 3.00031, 3.00032, 2.00023, 0, 3.00036, 3.00029, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012] 6: [1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00065, 3.00132, 3.00093, 2.00017, 3.00004, 3.00055, 3.00049, 2.00019, 2.99929, 3.00032, 2.99941, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00066, 3.00044, 2.99974, 2.00017, 3.00074, 3.00001, 3.00074, 2.00019, 3.00052, 3.00068, 3.00043, 0, 2.00027, 0, 2.00027, 2.00027, 2.99996, 3.00012, 3.00053, 0, 3.00032, 3.00018, 3.00016, 2.00027, 3.00069, 3.0004, 3.00067] 6: [2.00019, 1.00012, 2.00019, 2.00023, 2.99957, 2.00023, 3.00048, 3.00056, 3.00037, 2.00023, 3.0004, 3.00061, 3.00024, 2.00023, 3.00056, 3.0008, 1.00012, 1.21057e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00019, 1.00012, 2.00019, 2.00023, 3.00054, 2.00023, 3.00008, 3.00047, 3.0005, 2.00023, 3.0002, 3.00042, 3.00049, 2.00023, 3.00041, 3.00029, 0, 1.00012, 0, 2.00015, 3.00056, 2.00023, 3.00056, 3.00033, 0, 2.00023, 3.00052, 3.00023, 3.00056, 2.00023, 3.00044, 3.00065] 6: [2.00017, 2.00019, 1.00006, 2.00019, 3.0006, 3.0007, 2.00019, 2.99959, 3.00049, 3.0002, 2.00019, 3.00042, 3.00074, 3.00154, 2.00019, 3.00082, 1.00012, 1.00012, 1.076e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00017, 2.00019, 1.00006, 2.00019, 3.00056, 2.99991, 2.00019, 3.00034, 3.00007, 2.99983, 2.00019, 3.00005, 3.00001, 3.00049, 2.00019, 3.00008, 0, 2.00027, 0, 2.00027, 3.00066, 3.00107, 2.00031, 3.00057, 0, 3.00037, 2.00031, 3.00053, 3.0003, 3.00009, 2.00031, 3.00003] 6: [2.00019, 2.00023, 2.00019, 1.00012, 3.00043, 3.00042, 3.00033, 2.00023, 3.00017, 3.00049, 3.00017, 2.00023, 3.00016, 3.0002, 3.00022, 2.00023, 1.00012, 1.00012, 1.00012, 1.21057e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00019, 2.00023, 2.00019, 1.00012, 3.00022, 3.00036, 3.0004, 2.00023, 3.00032, 3.00034, 3.00038, 2.00023, 3.00017, 3.00035, 3.00031, 2.00023, 0, 2.00015, 0, 1.00012, 3.00029, 3.00028, 3.00036, 2.00023, 0, 3.0003, 3.00032, 2.00023, 3.00027, 3.00042, 3.00032, 2.00023] 6: [2.00019, 3.00031, 3.00029, 3.00032, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.0003, 3.00027, 3.00034, 2.00023, 3.00086, 3.00059, 3.00027, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00022, 3.00039, 3.00019, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00034, 3.00035, 3.00048, 2.00023, 3.00024, 3.00036, 3.0002, 0, 3.00047, 0, 3.0004, 1.00012, 2.00023, 2.00023, 2.00023, 0, 3.00037, 3.00035, 3.00035, 2.00015, 3.00036, 3.0003, 3.00021] 6: [3.00064, 2.00023, 3.00036, 3.0004, 2.00023, 1.00012, 2.00023, 2.00023, 3.00002, 2.00023, 3.00041, 3.0004, 3.00035, 2.00023, 3.0004, 2.99971, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21055e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.9996, 2.00023, 3.00008, 3.00034, 2.00023, 1.00012, 2.00023, 2.00023, 3.00007, 2.00023, 3.00001, 2.99998, 3.00024, 2.00023, 2.99998, 3.00018, 0, 2.00023, 0, 3.00062, 2.00023, 1.00012, 2.00023, 2.00023, 0, 2.00023, 3.00029, 3.00069, 3.00008, 2.00023, 3.00013, 2.99963] 6: [3.0003, 3.00038, 2.00019, 3.0003, 2.00023, 2.00023, 1.00012, 2.00023, 3.00032, 3.00028, 2.00023, 3.00032, 3.00034, 3.00038, 2.00023, 3.00025, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 3.00032, 3.00029, 2.00019, 3.00031, 2.00023, 2.00023, 1.00012, 2.00023, 3.00034, 3.00038, 2.00023, 3.00032, 3.00027, 3.00026, 2.00023, 3.0004, 0, 3.0004, 0, 3.00033, 2.00023, 2.00023, 1.00012, 2.00023, 0, 3.00033, 2.00019, 3.0003, 3.00028, 3.00032, 2.00019, 3.00036] 6: [3.0004, 3.00044, 3.00032, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00033, 3.00041, 3.00034, 2.00023, 3.00031, 3.00026, 3.0002, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21055e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 3.00041, 3.0004, 3.00036, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00034, 3.00023, 3.0003, 2.00023, 3.00033, 3.00033, 3.00035, 2.00023, 0, 3.00028, 0, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 0, 3.00035, 3.00028, 2.00023, 3.00033, 3.00039, 3.0003, 2.00023] 6: [2.00017, 3.00048, 3.00032, 3.00019, 2.00019, 3.00021, 3.00018, 3.00093, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00088, 3.00006, 3.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 2.00017, 3.00041, 3.00071, 3.0003, 2.00019, 3.00008, 3.00032, 3.00092, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.00055, 3.00008, 3.00027, 0, 3.00044, 0, 3.00125, 2.00027, 2.99974, 3, 3.00033, 0, 2.00031, 2.00031, 2.00031, 2.00027, 3.00027, 3.00059, 3.00021] 6: [3.00014, 2.00023, 3.0002, 3.00086, 3.00088, 2.00023, 3.00049, 2.99968, 2.00019, 1.00012, 2.00023, 2.00023, 3.00068, 2.00023, 3.00045, 3.00084, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21056e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 3.00005, 2.00023, 2.99996, 2.9999, 3.00133, 2.00023, 2.99999, 2.99985, 2.00019, 1.00012, 2.00023, 2.00023, 3.00021, 2.00023, 3.00022, 3.0002, 0, 2.00023, 0, 2.99937, 3.00016, 2.00023, 3.00028, 3.00024, 0, 1.00012, 2.00019, 2.00019, 3.00051, 2.00023, 3.00008, 3.00044] 6: [3.00029, 3.00044, 2.00019, 3.00044, 3.00019, 3.00022, 2.00023, 3.00029, 2.00019, 2.00023, 1.00012, 2.00023, 3.00022, 3.0006, 2.00023, 3.00056, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21057e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 3.00021, 3.0002, 2.00019, 3.00044, 3.00008, 3.00032, 2.00023, 3.00029, 2.00019, 2.00023, 1.00012, 2.00023, 3.00014, 3.00032, 2.00023, 3.00026, 0, 3.00044, 0, 3.00035, 3.00037, 3.00054, 2.00019, 3.00042, 0, 2.00019, 1.00012, 2.00019, 3.00023, 3.00016, 2.00019, 3.00052] 6: [3.0007, 2.99989, 3.0006, 2.00023, 3.00028, 3.00005, 3.00046, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00062, 3.00014, 3.00048, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21056e-07, 2.00023, 2.00023, 2.00023, 1.00012, 3.00034, 3.00012, 3.00051, 2.00023, 3.0003, 3.00061, 3.0005, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00039, 3.00024, 3.0002, 2.00023, 0, 3.00021, 0, 2.00023, 3.00096, 3.00041, 3.00054, 2.00023, 0, 2.00019, 2.00019, 1.00012, 3.00033, 3.00028, 3.00022, 2.00023] 6: [2.00019, 3.00038, 3.0005, 3.00038, 2.00023, 3.0004, 2.99984, 2.9998, 2.00019, 2.99982, 3.00034, 3.00028, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 2.00019, 3.00042, 3.00035, 3.00078, 2.00023, 2.99991, 2.99999, 3.00006, 2.00019, 2.99969, 3.00046, 2.99968, 1.00012, 2.00023, 2.00023, 2.00023, 0, 3.00027, 0, 2.99996, 2.00015, 3.00139, 3.00067, 3.00046, 0, 3.00063, 3.00083, 3.00082, 1.00012, 2.00023, 2.00023, 2.00023] 6: [3.00039, 2.00023, 3.00012, 3.00011, 3.00027, 2.00023, 3.00024, 3.00005, 3.00028, 2.00023, 3.0002, 3.00047, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21055e-07, 1.00012, 1.00012, 3.00026, 2.00023, 3.00027, 3.00014, 3.00036, 2.00023, 3.00035, 3.00029, 3.0002, 2.00023, 3.00036, 3.00036, 2.00023, 1.00012, 2.00023, 2.00023, 0, 2.00023, 0, 3.00037, 3.00029, 2.00023, 3.00031, 3.00026, 0, 2.00023, 3.00016, 3.00037, 2.00023, 1.00012, 2.00023, 2.00023] 6: [3.00033, 3.00022, 2.00019, 3.00005, 2.99991, 3.0001, 2.00023, 3.00126, 2.9997, 3.00038, 2.00023, 3.00007, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 2.99966, 3.00023, 2.00019, 2.99985, 3.00022, 3.00086, 2.00023, 3.00043, 2.99994, 3.0012, 2.00023, 3.00088, 2.00023, 2.00023, 1.00012, 2.00023, 0, 3.00086, 0, 3.00094, 3.00011, 2.99962, 2.00019, 3.00033, 0, 3.00046, 2.00019, 3.00001, 2.00023, 2.00023, 1.00012, 2.00023] 6: [3.0003, 3.00024, 3.00035, 2.00023, 3.0004, 3.0003, 3.00015, 2.00023, 3.00032, 3.00019, 3.00041, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21055e-07, 3.0002, 3.0003, 3.00024, 2.00023, 3.0002, 3.00014, 3.00035, 2.00023, 3.00035, 3.00028, 3.00038, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 0, 3.0002, 0, 2.00023, 3.00016, 3.0003, 3.0002, 2.00023, 0, 3.00014, 3.00034, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012] 6: [1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00021, 3.00043, 3.00047, 2.00017, 3.00039, 3.00046, 3.00024, 2.00019, 2.99991, 3.00032, 3.00023, 1.00006, 2.00019, 2.00017, 2.00019, 2.00019, 3.00018, 3.0002, 3.00032, 2.00017, 3.00025, 3.00035, 3.00045, 2.00019, 3.0002, 3.00037, 3.00038, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 0, 2.00027, 0, 2.00027, 2.00027, 3.0004, 3.00026, 3.00045, 0, 3.00067, 3.00038, 3.00051, 2.00027, 3.00027, 3.00027, 3.00047] 6: [2.00019, 1.00012, 2.00019, 2.00023, 3.00133, 2.00023, 3.00081, 3.0008, 3.00064, 2.00023, 2.99969, 3.00038, 2.99991, 2.00023, 2.99998, 2.99976, 2.00019, 1.00012, 2.00019, 2.00023, 2.99888, 2.00023, 3.00035, 3.00052, 3.00054, 2.00023, 3.00067, 3.00087, 3.00066, 2.00023, 3.00001, 2.99981, 1.00012, 1.21057e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 0, 1.00012, 0, 2.00015, 2.99846, 2.00023, 3.0001, 3.00044, 0, 2.00023, 3.00042, 3.00061, 3.00203, 2.00023, 3.00021, 3.00023] 6: [2.00017, 2.00019, 1.00006, 2.00019, 3.0005, 3.00081, 2.00019, 3.00028, 3.00074, 3.00069, 2.00019, 3.0008, 3.00032, 3.00022, 2.00019, 3.00104, 2.00017, 2.00019, 1.00006, 2.00019, 2.99959, 3.0001, 2.00019, 2.99999, 3.00041, 3.0007, 2.00019, 3.00051, 3.00021, 2.99963, 2.00019, 3.00024, 1.00012, 1.00012, 1.076e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 0, 2.00027, 0, 2.00027, 2.99998, 2.99981, 2.00031, 3.00054, 0, 3.00033, 2.00031, 3.00064, 3.00034, 3.00101, 2.00031, 3.00094] 6: [2.00019, 2.00023, 2.00019, 1.00012, 2.99949, 2.99954, 2.99932, 2.00023, 3.00043, 2.99967, 3.0005, 2.00023, 3.00006, 3.00142, 3.00083, 2.00023, 2.00019, 2.00023, 2.00019, 1.00012, 3.00107, 3.00024, 3.00053, 2.00023, 3.00082, 3.00054, 3.00018, 2.00023, 2.99947, 2.99991, 3.0007, 2.00023, 1.00012, 1.00012, 1.00012, 1.21057e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 0, 2.00015, 0, 1.00012, 3.00141, 2.99957, 3.00096, 2.00023, 0, 3.00006, 3.00031, 2.00023, 2.99985, 2.9995, 3.00105, 2.00023] 6: [2.00019, 3.00036, 3.00034, 3.00036, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.0005, 3.0003, 3.00025, 2.00023, 3.00026, 3.00001, 3.00004, 2.00019, 3.00076, 3.0002, 3.0007, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00071, 3.00026, 3.00018, 2.00023, 3.00122, 3.00069, 3.0005, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 0, 3.00027, 0, 3.00006, 1.00012, 2.00023, 2.00023, 2.00023, 0, 3.00047, 3.00004, 3.00021, 2.00015, 3.00022, 3.00052, 3.0002] 6: [3.00015, 2.00023, 3.00011, 3.00071, 2.00023, 1.00012, 2.00023, 2.00023, 3.00053, 2.00023, 3.00064, 3.00084, 3.00087, 2.00023, 3.00082, 3.00199, 3.0007, 2.00023, 3.00028, 3.00039, 2.00023, 1.00012, 2.00023, 2.00023, 3.00008, 2.00023, 3.00022, 3.00001, 3.0001, 2.00023, 2.99999, 3.00064, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21055e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 0, 2.00023, 0, 2.9995, 2.00023, 1.00012, 2.00023, 2.00023, 0, 2.00023, 3.00018, 3.0002, 3.00004, 2.00023, 3.00021, 2.99987] 6: [3.00068, 3.00024, 2.00019, 2.99957, 2.00023, 2.00023, 1.00012, 2.00023, 3.00003, 3.0004, 2.00023, 3.00008, 3.00134, 3.00035, 2.00023, 3.00016, 3.00012, 3.00051, 2.00019, 3.00054, 2.00023, 2.00023, 1.00012, 2.00023, 3.00055, 3.00078, 2.00023, 3.0003, 3.00064, 3.00015, 2.00023, 3.0005, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 0, 3.00037, 0, 2.99993, 2.00023, 2.00023, 1.00012, 2.00023, 0, 3.00029, 2.00019, 2.99982, 3, 3.0001, 2.00019, 3.00036] 6: [3.00038, 3.00088, 3.00072, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00007, 3.0006, 3.00003, 2.00023, 2.99978, 2.99993, 3.00017, 2.00023, 2.99999, 3.00006, 3.0002, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.99993, 3.00032, 2.99997, 2.00023, 3.00072, 3.00052, 3.00016, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21055e-07, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 0, 3.00042, 0, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 0, 3.00039, 3.00008, 2.00023, 2.99999, 3.00032, 3.00051, 2.00023] 6: [2.00017, 3.0003, 3.00016, 3.00033, 2.00019, 3.0002, 3.00018, 2.99975, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 2.99931, 3.00048, 3.00162, 2.00017, 2.99997, 3.00013, 3.00061, 2.00019, 3.00072, 3.00013, 3.00008, 1.00006, 2.00019, 2.00019, 2.00019, 2.00019, 3.0008, 3.00035, 3.00024, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.076e-07, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.00023, 2.00023, 0, 2.99942, 0, 3.00088, 2.00027, 2.99967, 2.99939, 3, 0, 2.00031, 2.00031, 2.00031, 2.00027, 3.00059, 2.99997, 3.00056] 6: [3.00027, 2.00023, 3.00032, 2.9997, 3, 2.00023, 3.00032, 3.00046, 2.00019, 1.00012, 2.00023, 2.00023, 3.00018, 2.00023, 3.00036, 2.99987, 3.00005, 2.00023, 3.00074, 3.00065, 2.99967, 2.00023, 3.00018, 2.99975, 2.00019, 1.00012, 2.00023, 2.00023, 3.00022, 2.00023, 3.00031, 3.00081, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21056e-07, 1.00012, 1.00012, 2.00023, 1.00012, 2.00023, 2.00023, 0, 2.00023, 0, 3.00039, 3.00061, 2.00023, 3.00036, 3.00067, 0, 1.00012, 2.00019, 2.00019, 3.00023, 2.00023, 3.00023, 3.00033] 6: [2.99949, 3.0004, 2.00019, 3.00071, 3.00049, 3.00065, 2.00023, 3.00032, 2.00019, 2.00023, 1.00012, 2.00023, 2.99996, 3.00018, 2.00023, 2.99994, 3.00037, 3.00053, 2.00019, 2.99905, 3.00085, 3.00047, 2.00023, 3.00063, 2.00019, 2.00023, 1.00012, 2.00023, 3.00044, 3.00045, 2.00023, 2.99951, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21057e-07, 1.00012, 2.00023, 2.00023, 1.00012, 2.00023, 0, 3.0005, 0, 3.00045, 2.99975, 3.00032, 2.00019, 3.00047, 0, 2.00019, 1.00012, 2.00019, 3.00035, 3.00021, 2.00019, 2.99996] 6: [3.00046, 3.00035, 3.0003, 2.00023, 3.00046, 3.00046, 3.00035, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00042, 3.00067, 3.00048, 2.00023, 3.00058, 3.00056, 3.00044, 2.00023, 3.0003, 3.00046, 3.00036, 2.00023, 2.00019, 2.00023, 2.00023, 1.00012, 3.00037, 3.0007, 3.00042, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21056e-07, 2.00023, 2.00023, 2.00023, 1.00012, 0, 3.00039, 0, 2.00023, 3.00014, 3.00046, 3.00028, 2.00023, 0, 2.00019, 2.00019, 1.00012, 3.00056, 3.00046, 3.00023, 2.00023] 6: [2.00019, 3.00019, 3.0001, 2.99999, 2.00023, 3.00044, 3.00016, 3.00028, 2.00019, 2.99988, 2.9999, 3.00034, 1.00012, 2.00023, 2.00023, 2.00023, 2.00019, 3.00003, 3.00057, 2.99982, 2.00023, 3.00013, 3.00015, 3.00004, 2.00019, 2.9998, 3.00042, 3.00067, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.21057e-07, 1.00012, 1.00012, 1.00012, 0, 3.00035, 0, 3.0002, 2.00015, 3.00038, 2.99968, 3.0002, 0, 3.00019, 3.00031, 3.00052, 1.00012, 2.00023, 2.00023, 2.00023] 6: [3.00074, 2.00023, 3.00048, 3.00066, 3.00079, 2.00023, 3.00082, 3.00067, 2.99979, 2.00023, 3.0005, 3.00041, 2.00023, 1.00012, 2.00023, 2.00023, 3.0001, 2.00023, 2.99971, 3.00058, 3.00134, 2.00023, 3.00068, 3.00108, 3.00024, 2.00023, 3.00009, 3.00038, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 1.00012, 1.21055e-07, 1.00012, 1.00012, 0, 2.00023, 0, 3.0002, 3.00032, 2.00023, 3.00017, 3.00048, 0, 2.00023, 2.99963, 3.00016, 2.00023, 1.00012, 2.00023, 2.00023] 6: [3.00029, 3.0004, 2.00019, 3.00028, 3.0004, 3.00043, 2.00023, 3.00037, 3.00051, 3.0004, 2.00023, 3.00026, 2.00023, 2.00023, 1.00012, 2.00023, 3.00038, 3.00042, 2.00019, 3.00043, 3.00019, 3.00008, 2.00023, 2.99975, 3.0002, 3.00046, 2.00023, 3.00032, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 1.00012, 1.00012, 1.21056e-07, 1.00012, 0, 3.0004, 0, 3.00043, 3.00018, 3.0005, 2.00019, 3.00038, 0, 3.00037, 2.00019, 3.00028, 2.00023, 2.00023, 1.00012, 2.00023] 6: [3.00032, 3.00034, 3.00026, 2.00023, 3.00024, 3.0004, 3.00039, 2.00023, 3.00027, 3.00039, 3.00036, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00038, 3.00038, 3.00036, 2.00023, 3.00014, 3.00023, 3.0005, 2.00023, 3.00039, 3.00024, 3.00028, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 2.00023, 2.00023, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.21055e-07, 0, 3.00034, 0, 2.00023, 3.00034, 3.0004, 3.00034, 2.00023, 0, 3.00034, 3.00028, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [2.00027, 1.00012, 2.00027, 2.00015, 3.00067, 2.00023, 3.00064, 3.00047, 3.0006, 2.00023, 3.00066, 3.00063, 3.00063, 2.00023, 3.00056, 3.00059, 2.00027, 1.00012, 2.00027, 2.00015, 3.00144, 2.00023, 2.99998, 3.00027, 3.00076, 2.00023, 3.00045, 3.00018, 3.00043, 2.00023, 3.00053, 3.0006, 2.00027, 1.00012, 2.00027, 2.00015, 3.00044, 2.00023, 3.00033, 3.00048, 3.0003, 2.00023, 3.00019, 3.00007, 3.00014, 2.00023, 3.0003, 3.00057, 0, 9.41462e-08, 0, 1, 2.00023, 1.00012, 2.00027, 2.00015, 0, 1.00012, 2.00023, 2.00014, 2.00023, 1.00012, 2.00027, 2.00015] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [2.00027, 2.00015, 2.00027, 1.00012, 2.99968, 3.00085, 3.00056, 2.00023, 3.0008, 3.00058, 3.00017, 2.00023, 3.00072, 3.00118, 3.0004, 2.00023, 2.00027, 2.00015, 2.00027, 1.00012, 2.99974, 3.00086, 3.0013, 2.00023, 3.00053, 3.00031, 3.00012, 2.00023, 3.0006, 3.00053, 3.00009, 2.00023, 2.00027, 2.00015, 2.00027, 1.00012, 3.00003, 3.00102, 3.00075, 2.00023, 3.00125, 3.00028, 2.99984, 2.00023, 3.00036, 3.00062, 3.0005, 2.00023, 0, 1, 0, 9.41462e-08, 2.00023, 2.00015, 2.00027, 1.00012, 0, 2.00014, 2.00023, 1.00012, 2.00023, 2.00015, 2.00027, 1.00012] 6: [2.00027, 3.0001, 3.00044, 3.00029, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00013, 3.00057, 3.0006, 2.00015, 3.00052, 3.00017, 3.00026, 2.00027, 2.99998, 3.00072, 2.99991, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00027, 3.00028, 3.00009, 2.00015, 3.00046, 3.00023, 2.99989, 2.00027, 2.99991, 3.00038, 3.0005, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00049, 3.00058, 2.99987, 2.00015, 3.00016, 3.00019, 3.00048, 0, 2.00023, 0, 2.00023, 9.41462e-08, 1.00012, 1.00012, 1.00012, 0, 2.00027, 2.00023, 2.00027, 1, 2.00015, 2.00014, 2.00015] 6: [3.00051, 2.00023, 3.00036, 3.00008, 2.00023, 1.00012, 2.00023, 2.00023, 3.00031, 2.00023, 3.00024, 3.00034, 3.0005, 2.00023, 3.00021, 2.99961, 3.00026, 2.00023, 3.00019, 3.00026, 2.00023, 1.00012, 2.00023, 2.00023, 3.00044, 2.00023, 3.0005, 3.0004, 3.0004, 2.00023, 3.00046, 3.0008, 3.00041, 2.00023, 3.00037, 3.00025, 2.00023, 1.00012, 2.00023, 2.00023, 3.00035, 2.00023, 3.00034, 3.00032, 3.00034, 2.00023, 3.0005, 3.00027, 0, 1.00012, 0, 2.00015, 1.00012, 1.21058e-07, 1.00012, 1.00012, 0, 1.00012, 2.00015, 2.00019, 2.00015, 1.00012, 2.00019, 2.00023] 6: [3.00035, 2.9996, 2.00031, 3.00049, 2.00023, 2.00023, 1.00012, 2.00023, 2.99997, 2.99994, 2.00019, 3.00038, 2.99957, 2.99938, 2.00019, 3.00038, 2.99978, 3.00114, 2.00031, 3.00043, 2.00023, 2.00023, 1.00012, 2.00023, 3.00023, 3.00053, 2.00019, 3.00026, 3.00043, 3.00004, 2.00019, 3.0007, 3.00019, 3.00035, 2.00031, 3, 2.00023, 2.00023, 1.00012, 2.00023, 3.00078, 3.00039, 2.00019, 3.00042, 3.00029, 3.00036, 2.00019, 2.99983, 0, 2.00027, 0, 2.00027, 1.00012, 1.00012, 1.07601e-07, 1.00012, 0, 2.00015, 1.00006, 2.00015, 2.00014, 2.00019, 1.00006, 2.00019] 6: [2.99975, 3.00054, 3.00026, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00011, 3.00026, 3.00048, 2.00023, 3.00092, 2.99948, 3.00074, 2.00023, 3.00078, 3.0006, 3.00015, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00043, 2.99996, 3.00046, 2.00023, 3.00028, 3.00008, 3.00028, 2.00023, 3.00037, 3.00033, 3.00046, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00055, 2.99974, 3.00014, 2.00023, 3.00041, 3.00034, 3.00053, 2.00023, 0, 2.00015, 0, 1.00012, 1.00012, 1.00012, 1.00012, 1.21058e-07, 0, 2.00019, 2.00015, 1.00012, 2.00015, 2.00023, 2.00019, 1.00012] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [3.00079, 2.00023, 3.00048, 3.00056, 3.00028, 2.00023, 3.00035, 3.00066, 2.00031, 1.00012, 2.00019, 2.00019, 3.0005, 2.00023, 3.00032, 3.00054, 3.00011, 2.00023, 3.00024, 3.00028, 2.9996, 2.00023, 3.00048, 3.00054, 2.00031, 1.00012, 2.00019, 2.00019, 3.00067, 2.00023, 3.00026, 2.99982, 3.0013, 2.00023, 3.00081, 3.00053, 2.99978, 2.00023, 3.00018, 3.00038, 2.00031, 1.00012, 2.00019, 2.00019, 3.0006, 2.00023, 3.00003, 3.00049, 0, 1.00012, 0, 2.00014, 2.00027, 1.00012, 2.00015, 2.00019, 0, 1.07601e-07, 1.00006, 1.00006, 2.00027, 1.00012, 2.00015, 2.00019] 6: [2.99968, 3.0007, 2.00031, 3.00008, 2.99962, 3.00056, 2.00019, 3.00009, 2.00031, 2.00019, 1.00012, 2.00019, 3.00049, 3.00104, 2.00019, 2.99947, 3.00095, 3.00002, 2.00031, 3.00033, 2.99988, 3.00047, 2.00019, 3.00012, 2.00031, 2.00019, 1.00012, 2.00019, 3.00009, 3.00042, 2.00019, 3.00042, 3.00008, 3.00075, 2.00031, 3.00048, 2.999, 3.00052, 2.00019, 3.0004, 2.00031, 2.00019, 1.00012, 2.00019, 3.00057, 3.00082, 2.00019, 3.00036, 0, 2.00023, 0, 2.00023, 2.00023, 2.00015, 1.00006, 2.00015, 0, 1.00006, 9.41452e-08, 1.00006, 2.00023, 2.00015, 1.00006, 2.00015] 6: [3.00079, 3.00021, 3.00031, 2.00023, 3.00095, 3.00005, 3.00075, 2.00023, 2.00031, 2.00019, 2.00019, 1.00012, 2.9993, 3.00023, 3.00047, 2.00023, 3.00022, 3.00037, 3.00083, 2.00023, 3.00105, 2.99977, 2.99964, 2.00023, 2.00031, 2.00019, 2.00019, 1.00012, 3.00018, 3.00012, 3.0003, 2.00023, 2.99786, 3.00002, 3.00032, 2.00023, 3.00152, 3.00001, 2.99961, 2.00023, 2.00031, 2.00019, 2.00019, 1.00012, 3.00034, 2.99993, 2.99986, 2.00023, 0, 2.00014, 0, 1.00012, 2.00027, 2.00019, 2.00015, 1.00012, 0, 1.00006, 1.00006, 1.07601e-07, 2.00027, 2.00019, 2.00015, 1.00012] 6: [2.00027, 3.00029, 2.99986, 3.00072, 2.00015, 3.00042, 3.00053, 3.00092, 2.00027, 3.00048, 3.00033, 3.00053, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00009, 2.99937, 3.0001, 2.00015, 3.0003, 3.00001, 3.00036, 2.00027, 3.0004, 3.00062, 3.00025, 1.00012, 2.00023, 2.00023, 2.00023, 2.00027, 3.00038, 2.99982, 3.00003, 2.00015, 3.00044, 3.00145, 3.00034, 2.00027, 2.99995, 3.00046, 2.99993, 1.00012, 2.00023, 2.00023, 2.00023, 0, 2.00023, 0, 2.00023, 1, 2.00015, 2.00014, 2.00015, 0, 2.00027, 2.00023, 2.00027, 9.41462e-08, 1.00012, 1.00012, 1.00012] 6: [2.99992, 2.00023, 3.00037, 3.00006, 2.99983, 2.00023, 3.00064, 3.00012, 3.00066, 2.00023, 3.0003, 2.99996, 2.00023, 1.00012, 2.00023, 2.00023, 3.00053, 2.00023, 3.00107, 3.0003, 3.0001, 2.00023, 3.00106, 3.00074, 3.00018, 2.00023, 2.99986, 3.00052, 2.00023, 1.00012, 2.00023, 2.00023, 3.00006, 2.00023, 2.99993, 3.00022, 3.00029, 2.00023, 3.00047, 3.00002, 3.00024, 2.00023, 3.00002, 3.00025, 2.00023, 1.00012, 2.00023, 2.00023, 0, 1.00012, 0, 2.00015, 2.00015, 1.00012, 2.00019, 2.00023, 0, 1.00012, 2.00015, 2.00019, 1.00012, 1.21058e-07, 1.00012, 1.00012] 6: [3.00004, 2.99995, 2.00031, 3.00022, 3.00093, 3, 2.00019, 3.00004, 3.0005, 3.00087, 2.00019, 3.00038, 2.00023, 2.00023, 1.00012, 2.00023, 3.00097, 2.99977, 2.00031, 3.00027, 3.00084, 2.99979, 2.00019, 3.00055, 2.99981, 3.00039, 2.00019, 3, 2.00023, 2.00023, 1.00012, 2.00023, 3.00173, 3.00024, 2.00031, 3.00037, 3.00052, 2.99992, 2.00019, 3.00015, 2.99993, 3.00006, 2.00019, 3.00076, 2.00023, 2.00023, 1.00012, 2.00023, 0, 2.00027, 0, 2.00027, 2.00014, 2.00019, 1.00006, 2.00019, 0, 2.00015, 1.00006, 2.00015, 1.00012, 1.00012, 1.07601e-07, 1.00012] 6: [3.00046, 3.00008, 3.00018, 2.00023, 3.00012, 3.00044, 3.00002, 2.00023, 3.00015, 3.00023, 3.00015, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00021, 3.00003, 3.00014, 2.00023, 2.99955, 3.00024, 2.99974, 2.00023, 3.00043, 3.00034, 3.00043, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 3.00034, 2.99991, 3.00022, 2.00023, 3.00018, 3.00033, 3.00021, 2.00023, 3.00015, 2.99993, 3.00017, 2.00023, 2.00023, 2.00023, 2.00023, 1.00012, 0, 2.00015, 0, 1.00012, 2.00015, 2.00023, 2.00019, 1.00012, 0, 2.00019, 2.00015, 1.00012, 1.00012, 1.00012, 1.00012, 1.21058e-07] 6: ] 6: Compute joint node-pairs likelihood....: 6: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 6: Detailed count, uniformization method, type 2: 6: 64x64 6: [ 6: [9.41499e-08, 1, 0.000232, 1, 1.00012, 1.50012, 1.00025, 1.50012, 1.00012, 2.00008, 1.00037, 2.00008, 1.00012, 1.50017, 1.50022, 1.50017, 1.00006, 2.00008, 1.00029, 2.00008, 2.00017, 2.50015, 2.00003, 2.50046, 1.50022, 2.50024, 1.50002, 2.50065, 2.00015, 2.50019, 2.16687, 2.50019, 1.00006, 2.00008, 1.00029, 2.00008, 2.00019, 2.49992, 2.00042, 2.50078, 2.00015, 2.66721, 2.00037, 2.6669, 2.00019, 2.50002, 2.16716, 2.50038, 0, 2.00015, 0, 2.00015, 2.00027, 2.50082, 2.0007, 2.50038, 0, 3.00044, 2.00222, 3.00148, 2.00019, 2.75004, 2.33409, 2.75024] 6: [1, 1.07606e-07, 1, 0.000232029, 1.50013, 1.00012, 1.50015, 1.00023, 2.00008, 1.00012, 2.0001, 1.00035, 1.50018, 1.00012, 2.00012, 1.00029, 2.00008, 1.00012, 2.00008, 1.00035, 2.5007, 2.00023, 2.5008, 2.0008, 2.33344, 2.00023, 2.33353, 2.00005, 2.50009, 2.00023, 2.66694, 2.00017, 2.00008, 1.00012, 2.00008, 1.00035, 2.49986, 2.00023, 2.50011, 2.00024, 2.66675, 2.00023, 2.66682, 1.99978, 2.50032, 2.00023, 2.66688, 2.0006, 0, 1.00012, 0, 1.00019, 2.25028, 2.00023, 2.25021, 2.00028, 0, 2.00023, 3.00029, 2.00044, 2.75014, 2.00023, 3.00034, 2.00026] 6: [0.000232, 1, 9.41494e-08, 1, 1.00025, 1.50014, 1.00012, 1.50014, 1.00037, 2.0001, 1.00012, 2.0001, 1.50018, 2.00008, 1.00012, 2.00008, 1.00029, 2.00008, 1.00006, 2.00008, 2.00005, 2.50028, 2.00017, 2.49958, 1.50038, 2.49979, 1.50026, 2.50031, 2.16698, 2.66677, 2.00015, 2.6663, 1.00029, 2.00008, 1.00006, 2.00008, 1.99947, 2.50011, 2.00019, 2.50007, 2.00044, 2.66622, 2.00017, 2.66665, 2.16697, 2.66654, 2.00019, 2.66686, 0, 2.00015, 0, 2.00015, 2.00048, 2.49953, 2.00031, 2.49979, 0, 3.00054, 2.00027, 2.9997, 2.33344, 3.00012, 2.00023, 3.00043] 6: [1, 0.000232029, 1, 1.07606e-07, 1.50013, 1.00023, 1.50015, 1.00012, 2.00008, 1.00035, 2.0001, 1.00012, 1.50018, 1.00029, 2.00012, 1.00012, 2.00008, 1.00035, 2.00008, 1.00012, 2.50004, 2.00033, 2.49957, 2.00023, 2.33338, 2.00062, 2.33392, 2.00023, 2.50041, 2.00048, 2.66671, 2.00023, 2.00008, 1.00035, 2.00008, 1.00012, 2.50082, 2.00053, 2.5004, 2.00023, 2.6659, 2.00054, 2.66707, 2.00023, 2.50038, 2.00055, 2.66628, 2.00023, 0, 1.00019, 0, 1.00012, 2.24994, 2.00012, 2.25095, 2.00023, 0, 2.00043, 2.99974, 2.00023, 2.74998, 2.0006, 3.00028, 2.00023] 6: [1.00012, 1.50013, 1.00025, 1.50013, 8.07051e-08, 8.5188e-08, 8.29474e-08, 8.5188e-08, 1.00012, 1.50013, 1.00025, 1.50013, 1.00012, 1.00021, 1.50012, 1.00021, 2.00017, 2.50005, 2.00028, 2.50057, 1.00012, 1.00012, 1.00012, 1.00012, 1.50024, 1.99982, 1.50055, 2.0002, 2.00017, 1.99934, 2.16709, 2.00038, 2.00019, 2.50003, 2.00038, 2.50019, 1.00012, 1.00012, 1.00012, 1.00012, 2.00017, 2.1666, 2.00018, 2.16727, 2.00023, 2.00024, 2.16746, 1.99991, 0, 2.25023, 0, 2.25017, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.25021, 2.00037, 2.2503, 2.00012, 2.33349, 2.1666, 2.33409] 6: [1.50012, 1.00012, 1.50014, 1.00023, 8.5188e-08, 8.0703e-08, 8.74289e-08, 8.07043e-08, 1.50012, 1.00012, 1.50014, 1.00023, 1.00021, 1.00012, 1.50015, 1.00017, 2.49994, 2.00023, 2.50023, 2.00062, 1.00012, 1.00012, 1.00012, 1.00012, 1.83372, 2.00023, 1.83343, 2.00027, 2.00006, 2.00023, 2.16645, 1.99999, 2.50014, 2.00023, 2.50015, 2.00043, 1.00012, 1.00012, 1.00012, 1.00012, 2.16671, 2.00023, 2.16698, 2.00058, 2.00037, 2.00023, 2.16738, 2.00023, 0, 2.00023, 0, 2.00007, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00023, 2.50024, 2.00008, 2.33318, 2.00023, 2.49997, 2.00023] 6: [1.00025, 1.50015, 1.00012, 1.50015, 8.29474e-08, 8.74289e-08, 8.07041e-08, 8.74289e-08, 1.00025, 1.50014, 1.00012, 1.50014, 1.50008, 1.50012, 1.00012, 1.50012, 2.0006, 2.49977, 2.00017, 2.49973, 1.00012, 1.00012, 1.00012, 1.00012, 1.50029, 2.00017, 1.50031, 2.00029, 2.16664, 2.16736, 2.00017, 2.16641, 2.00039, 2.50051, 2.00019, 2.50049, 1.00012, 1.00012, 1.00012, 1.00012, 2.00003, 2.16699, 2.00021, 2.16699, 2.16697, 2.16715, 2.00023, 2.16716, 0, 2.25021, 0, 2.25037, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.49999, 2.00017, 2.50051, 2.16678, 2.50018, 2.00015, 2.49981] 6: [1.50012, 1.00023, 1.50014, 1.00012, 8.5188e-08, 8.07043e-08, 8.74289e-08, 8.0703e-08, 1.50012, 1.00023, 1.50014, 1.00012, 1.00021, 1.00017, 1.50015, 1.00012, 2.50022, 2.00039, 2.50036, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.83368, 2.00049, 1.83343, 2.00023, 2.00003, 2.00017, 2.16693, 2.00023, 2.49998, 2.00019, 2.50001, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 2.16696, 2.00027, 2.16697, 2.00023, 2.00028, 2.00002, 2.16737, 2.00023, 0, 2.00022, 0, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00022, 2.50018, 2.00023, 2.33351, 2.0005, 2.50015, 2.00023] 6: [1.00012, 2.00008, 1.00037, 2.00008, 1.00012, 1.50012, 1.00025, 1.50012, 8.07004e-08, 1, 0.000231995, 1, 1.00012, 1.50017, 1.50023, 1.50017, 1.50022, 2.49964, 1.50066, 2.50063, 1.50024, 1.99977, 1.50056, 2.00043, 0.000116037, 1.0001, 0.000309303, 1.0001, 1.50022, 1.99981, 1.66676, 2.00034, 2.00014, 2.83284, 2.00089, 2.83336, 2.00015, 2.33383, 2.00016, 2.33337, 1, 1.50003, 1.00014, 1.50003, 2.00015, 2.33359, 2.16719, 2.33392, 0, 2.99989, 0, 3.00092, 2.00023, 2.5006, 2.00077, 2.50096, 0, 2.00004, 1.00039, 2.00004, 2.00015, 2.75042, 2.25004, 2.75049] 6: [2.00008, 1.00012, 2.0001, 1.00035, 1.50013, 1.00012, 1.50014, 1.00023, 1, 1.07605e-07, 1, 0.000232024, 1.50018, 1.00012, 2.00012, 1.00029, 2.66686, 2.00023, 2.66675, 2.00022, 2.16698, 2.00023, 2.16714, 2.00034, 1.0001, 1.00012, 1.00017, 1.00019, 2.16693, 2.00023, 2.33352, 2.0003, 2.83347, 2.00023, 2.83365, 2.00047, 2.33356, 2.00023, 2.3336, 2.00037, 1.50005, 1.00012, 1.5001, 1.00023, 2.33374, 2.00023, 2.50017, 2.0002, 0, 2.00023, 0, 2.00034, 2.25029, 2.00023, 2.5003, 2.00036, 0, 1.00012, 2.00006, 1.00027, 2.75025, 2.00023, 3.00008, 2.00046] 6: [1.00037, 2.0001, 1.00012, 2.0001, 1.00025, 1.50014, 1.00012, 1.50014, 0.000231995, 1, 9.41556e-08, 1, 1.50018, 2.00008, 1.00012, 2.00008, 1.50036, 2.50029, 1.50026, 2.50064, 1.49991, 2.00024, 1.50031, 1.99995, 0.000309302, 1.00017, 0.000232018, 1.00017, 1.66705, 2.1673, 1.50027, 2.16702, 2.00038, 2.83346, 2.00015, 2.83357, 2.00045, 2.33373, 2.00019, 2.33345, 1.00014, 1.50008, 1.00006, 1.50008, 2.1669, 2.50029, 2.00019, 2.50003, 0, 3.00012, 0, 3.00008, 2.00021, 2.50014, 2.00015, 2.50027, 0, 2.00004, 1.00006, 2.00004, 2.25026, 3.00016, 2.00012, 3.00034] 6: [2.00008, 1.00035, 2.0001, 1.00012, 1.50013, 1.00023, 1.50014, 1.00012, 1, 0.000232024, 1, 1.07605e-07, 1.50018, 1.00029, 2.00012, 1.00012, 2.66717, 2.00052, 2.66685, 2.00023, 2.16734, 2.00063, 2.16779, 2.00023, 1.0001, 1.00019, 1.00017, 1.00012, 2.16703, 2.00018, 2.33361, 2.00023, 2.8347, 2.00036, 2.83316, 2.00023, 2.33306, 2.00014, 2.33362, 2.00023, 1.50005, 1.00023, 1.5001, 1.00012, 2.33326, 2.00005, 2.50047, 2.00023, 0, 1.99998, 0, 2.00023, 2.25043, 2.00051, 2.49988, 2.00023, 0, 1.00027, 2.00006, 1.00012, 2.75006, 1.99995, 2.99986, 2.00023] 6: [1.00012, 1.50018, 1.50018, 1.50018, 1.00012, 1.00021, 1.50008, 1.00021, 1.00012, 1.50018, 1.50018, 1.50018, 9.41556e-08, 0.000116061, 1, 0.000116061, 2.00015, 2.50036, 2.33336, 2.50025, 2.00019, 1.99996, 2.33337, 1.99923, 1.50022, 2.00042, 1.83402, 2.00038, 1.00006, 1.00017, 1.50002, 1.00017, 2.00019, 2.5004, 2.33364, 2.50016, 2.00023, 2.00027, 2.33349, 2.00034, 2.00017, 2.16699, 2.33339, 2.16685, 1.00012, 1.00019, 1.50008, 1.00019, 0, 2.50009, 0, 2.50028, 2.00014, 2.16674, 2.3334, 2.16689, 0, 2.50025, 2.50009, 2.50014, 1.00006, 1.50015, 1.50012, 1.50015] 6: [1.50017, 1.00012, 2.00008, 1.00029, 1.00021, 1.00012, 1.50012, 1.00017, 1.50017, 1.00012, 2.00008, 1.00029, 0.000116061, 9.4154e-08, 1, 0.000116055, 2.50018, 2.00023, 2.83348, 2.00034, 2.00033, 2.00023, 2.33366, 2.00022, 1.83358, 2.00023, 2.16692, 2.00024, 1.00015, 1.00012, 1.50006, 1.00017, 2.50024, 2.00023, 2.8335, 2.00043, 2.00028, 2.00023, 2.33351, 2.00024, 2.16689, 2.00023, 2.50024, 2.00033, 1.00019, 1.00012, 1.5001, 1.00017, 0, 2.00023, 0, 2.0003, 2.16689, 2.00023, 2.5002, 2.00032, 0, 2.00023, 3.00013, 2.00041, 1.50012, 1.00012, 2.00002, 1.00029] 6: [1.50022, 2.00012, 1.00012, 2.00012, 1.50012, 1.50015, 1.00012, 1.50015, 1.50023, 2.00012, 1.00012, 2.00012, 1, 1, 1.21053e-07, 1, 2.33344, 2.83331, 2.00015, 2.83313, 2.33347, 2.33399, 2.00019, 2.33486, 1.83373, 2.33364, 1.50029, 2.33356, 1.50006, 1.50012, 1.00006, 1.50012, 2.33349, 2.83326, 2.00019, 2.83374, 2.33339, 2.33382, 2.00023, 2.33379, 2.33379, 2.50011, 2.00021, 2.5002, 1.50012, 1.50014, 1.00012, 1.50014, 0, 3.00059, 0, 3.00023, 2.33376, 2.50026, 2.00017, 2.50032, 0, 3.00016, 2.00015, 3.00034, 1.50016, 2.00008, 1.00006, 2.00008] 6: [1.50017, 1.00029, 2.00008, 1.00012, 1.00021, 1.00017, 1.50012, 1.00012, 1.50017, 1.00029, 2.00008, 1.00012, 0.000116061, 0.000116055, 1, 9.4154e-08, 2.50022, 2.0004, 2.83347, 2.00023, 2.00029, 2.0003, 2.33354, 2.00023, 1.83361, 2.00026, 2.16692, 2.00023, 1.00015, 1.00017, 1.50006, 1.00012, 2.50022, 2.00037, 2.8335, 2.00023, 2.00031, 2.00026, 2.33359, 2.00023, 2.1669, 2.00033, 2.50021, 2.00023, 1.00019, 1.00017, 1.5001, 1.00012, 0, 2.00031, 0, 2.00023, 2.16688, 2.00028, 2.50017, 2.00023, 0, 2.0004, 3.00011, 2.00023, 1.50012, 1.00029, 2.00002, 1.00012] 6: [1.00006, 2.00008, 1.00029, 2.00008, 2.00017, 2.50046, 2.00097, 2.50069, 1.50022, 2.6666, 1.50059, 2.667, 2.00015, 2.49936, 2.33361, 2.49946, 9.41499e-08, 1, 0.000231997, 1, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.50009, 1.00023, 1.50009, 1.00012, 1.5001, 1.00023, 1.5001, 1.00006, 2.00008, 1.00029, 2.00008, 2.00019, 2.50047, 2.0004, 2.4997, 2.00015, 2.50053, 2.00009, 2.50052, 2.00017, 2.50034, 2.00055, 2.50027, 0, 2.00015, 0, 2.00015, 2.00023, 2.49989, 2.00015, 2.50037, 0, 2.66684, 2.00027, 2.6667, 1.00046, 2.50055, 1.00077, 2.50053] 6: [2.00008, 1.00012, 2.00008, 1.00035, 2.49957, 2.00023, 2.50033, 2.00049, 2.50025, 2.00023, 2.50029, 2.00058, 2.50016, 2.00023, 2.83375, 2.00069, 1, 1.07606e-07, 1, 0.000232029, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 2.00008, 1.00012, 2.00008, 1.00035, 2.50037, 2.00023, 2.49999, 2.00043, 2.50034, 2.00023, 2.5001, 2.00039, 2.50033, 2.00023, 2.50027, 2.00031, 0, 1.00012, 0, 1.00019, 2.2504, 2.00023, 2.25042, 2.0003, 0, 2.00023, 2.75038, 2.00027, 2.25045, 2.00023, 2.2504, 2.00056] 6: [1.00029, 2.00008, 1.00006, 2.00008, 2.00049, 2.50051, 2.00017, 2.49959, 1.50055, 2.66677, 1.50026, 2.66696, 2.3339, 2.83463, 2.00015, 2.83394, 0.000231997, 1, 9.41494e-08, 1, 1.00023, 1.5001, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.5001, 1.00029, 2.00008, 1.00006, 2.00008, 2.00048, 2.49984, 2.00019, 2.5002, 2.00013, 2.49978, 2.00017, 2.49996, 2.0001, 2.50033, 2.00017, 2.49999, 0, 2.00015, 0, 2.00015, 2.0005, 2.50082, 2.00027, 2.5004, 0, 2.75024, 2.00023, 2.75038, 1.00072, 2.50007, 1.00054, 2.50002] 6: [2.00008, 1.00035, 2.00008, 1.00012, 2.50028, 2.0004, 2.5002, 2.00023, 2.50008, 2.0005, 2.5001, 2.00023, 2.50009, 2.00029, 2.83343, 2.00023, 1, 0.000232029, 1, 1.07606e-07, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 2.00008, 1.00035, 2.00008, 1.00012, 2.5001, 2.00036, 2.50025, 2.00023, 2.50019, 2.00034, 2.50025, 2.00023, 2.50006, 2.00035, 2.50019, 2.00023, 0, 1.00019, 0, 1.00012, 2.2502, 2.00027, 2.25027, 2.00023, 0, 2.00032, 2.7502, 2.00023, 2.25023, 2.0004, 2.25031, 2.00023] 6: [2.00017, 2.50018, 2.00029, 2.50018, 1.00012, 1.00012, 1.00012, 1.00012, 1.50024, 2.16688, 1.50035, 2.16691, 2.00019, 2.00063, 2.33371, 2.00024, 1.00012, 1.50011, 1.00023, 1.50011, 8.07051e-08, 8.29459e-08, 8.07051e-08, 8.29459e-08, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 2.00019, 2.5001, 2.00037, 2.50008, 1.00012, 1.00012, 1.00012, 1.00012, 2.00017, 2.00024, 2.00021, 2.00033, 2.00021, 2.00018, 2.00023, 2.00015, 0, 2.25033, 0, 2.25028, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00029, 2.00023, 2.00028, 1.50021, 2.16692, 1.50035, 2.16681] 6: [2.50045, 2.00023, 2.50023, 2.00038, 1.00012, 1.00012, 1.00012, 1.00012, 2.00004, 2.00023, 2.00034, 2.00033, 2.00029, 2.00023, 2.33362, 1.99985, 1.5001, 1.00012, 1.5001, 1.00023, 8.29459e-08, 8.0703e-08, 8.29454e-08, 8.07035e-08, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 2.49959, 2.00023, 2.49999, 2.00034, 1.00012, 1.00012, 1.00012, 1.00012, 2.00006, 2.00023, 2.00003, 1.99999, 2.00018, 2.00023, 2.00002, 2.00012, 0, 2.00023, 0, 2.00048, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00023, 2.33353, 2.00052, 2.00006, 2.00023, 2.00013, 1.99981] 6: [2.00029, 2.50024, 2.00017, 2.50018, 1.00012, 1.00012, 1.00012, 1.00012, 1.50037, 2.1669, 1.50031, 2.16692, 2.33348, 2.33357, 2.00019, 2.33347, 1.00023, 1.50011, 1.00012, 1.50011, 8.07051e-08, 8.29454e-08, 8.07041e-08, 8.29454e-08, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 2.00032, 2.50016, 2.00019, 2.50018, 1.00012, 1.00012, 1.00012, 1.00012, 2.0002, 2.00028, 2.00021, 2.00024, 2.00017, 2.0002, 2.00021, 2.00029, 0, 2.25029, 0, 2.25025, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.33355, 2.00015, 2.33353, 1.50033, 2.16691, 1.50026, 2.16694] 6: [2.50025, 2.00041, 2.5002, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 2.00025, 2.00033, 2.00029, 2.00023, 2.00026, 2.00021, 2.33347, 2.00023, 1.5001, 1.00023, 1.5001, 1.00012, 8.29459e-08, 8.07035e-08, 8.29454e-08, 8.0703e-08, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 2.50026, 2.00038, 2.50021, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 2.00024, 2.00015, 2.00023, 2.00023, 2.00024, 2.00022, 2.00026, 2.00023, 0, 2.00025, 0, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00029, 2.33353, 2.00023, 2.00023, 2.00032, 2.00024, 2.00023] 6: [1.50022, 2.33366, 1.50043, 2.33343, 1.50024, 1.8335, 1.50026, 1.83395, 0.000116037, 1.0001, 0.000309302, 1.0001, 1.50022, 1.83395, 1.83348, 1.83348, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 5.38005e-08, 6.94934e-08, 5.82873e-08, 6.94934e-08, 1.00012, 1.00014, 1.00012, 1.00014, 2.00014, 2.50024, 2.00053, 2.50015, 2.00015, 2.00004, 2.00016, 2.00061, 1, 1.00006, 1.00002, 1.00006, 2.00014, 2.00035, 1.99999, 2.00016, 0, 2.33362, 0, 2.33425, 2.00019, 1.99982, 1.99993, 2.00022, 0, 1.00019, 1.00015, 1.00019, 1.00043, 2.00023, 1.25056, 2.00019] 6: [2.50003, 2.00023, 2.5001, 2.00071, 2.0006, 2.00023, 2.00037, 1.99981, 1.0001, 1.00012, 1.00017, 1.00019, 2.00051, 2.00023, 2.33368, 2.00062, 1.50009, 1.00012, 1.5001, 1.00023, 1.00014, 1.00012, 1.00014, 1.00012, 6.94934e-08, 8.07035e-08, 8.07039e-08, 8.07038e-08, 1.00014, 1.00012, 1.00014, 1.00012, 2.49996, 2.00023, 2.49989, 2.00005, 2.0009, 2.00023, 2.00002, 1.9999, 1.00008, 1.00012, 1.00014, 1.00012, 2.00015, 2.00023, 2.00019, 2.00013, 0, 2.00023, 0, 1.99967, 2.00012, 2.00023, 2.16685, 2.00019, 0, 1.00012, 1.50011, 1.00017, 2.00039, 2.00023, 2.16674, 2.00037] 6: [1.50042, 2.33366, 1.50026, 2.33365, 1.50027, 1.83356, 1.50031, 1.8336, 0.000309303, 1.00017, 0.000232018, 1.00017, 1.83354, 2.1671, 1.50029, 2.16707, 1.00023, 1.50011, 1.00012, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 5.82873e-08, 8.07039e-08, 6.72546e-08, 8.07039e-08, 1.00012, 1.00014, 1.00012, 1.00014, 2.0002, 2.50007, 2.00015, 2.50027, 2.00001, 2.00022, 2.00019, 2.0002, 1.00002, 1.00012, 1.00006, 1.00012, 2.00004, 2.00023, 2.00017, 2.00019, 0, 2.50028, 0, 2.50021, 2.00019, 2.16702, 2.00014, 2.16694, 0, 1.50008, 1.00006, 1.50008, 1.25045, 2.33342, 1.50023, 2.3337] 6: [2.5005, 2.00007, 2.50044, 2.00023, 2.0002, 2.00006, 2.00036, 2.00023, 1.0001, 1.00019, 1.00017, 1.00012, 2.00047, 2.00015, 2.33371, 2.00023, 1.50009, 1.00023, 1.5001, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 6.94934e-08, 8.07038e-08, 8.07039e-08, 8.07035e-08, 1.00014, 1.00012, 1.00014, 1.00012, 2.5002, 2.0002, 2.50035, 2.00023, 2.00021, 2.00041, 2.00036, 2.00023, 1.00008, 1.00012, 1.00014, 1.00012, 2.00027, 2.00016, 2.00017, 2.00023, 0, 2.00023, 0, 2.00023, 2.00065, 2.00031, 2.16703, 2.00023, 0, 1.00017, 1.50011, 1.00012, 2.00028, 2.00027, 2.16684, 2.00023] 6: [2.00015, 2.50024, 2.16706, 2.50025, 2.00017, 2.00029, 2.16646, 1.99989, 1.50022, 2.16654, 1.66699, 2.16688, 1.00006, 1.00015, 1.50006, 1.00015, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 6.72541e-08, 7.84626e-08, 6.94971e-08, 7.84626e-08, 2.00017, 2.50026, 2.00033, 2.50056, 2.00019, 1.99994, 1.99997, 2.00004, 2.00015, 1.9998, 2.00026, 1.99979, 1.00006, 1.0001, 1.00008, 1.0001, 0, 2.25018, 0, 2.24995, 1.50021, 1.83422, 1.50049, 1.83366, 0, 2.00045, 1.50067, 2.00057, 0.000231977, 1.00015, 0.000405909, 1.00015] 6: [2.50026, 2.00023, 2.66666, 2.00021, 2.00022, 2.00023, 2.16682, 2.00005, 2.00023, 2.00023, 2.16683, 2.00039, 1.00017, 1.00012, 1.50012, 1.00017, 1.5001, 1.00012, 1.5001, 1.00023, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 7.84626e-08, 8.0703e-08, 8.07037e-08, 8.07038e-08, 2.50013, 2.00023, 2.50015, 2.00021, 2.00026, 2.00023, 2.00026, 2.00019, 2.00014, 2.00023, 2.00028, 2.00024, 1.00012, 1.00012, 1.00014, 1.00012, 0, 2.00023, 0, 2.00033, 2.00019, 2.00023, 2.00023, 2.00019, 0, 2.00023, 2.33345, 2.00032, 1.00015, 1.00012, 1.00017, 1.00019] 6: [2.16694, 2.66674, 2.00015, 2.66658, 2.16651, 2.1667, 2.00017, 2.16754, 1.66664, 2.33359, 1.50027, 2.33335, 1.50002, 1.50006, 1.00006, 1.50006, 1.00023, 1.50011, 1.00012, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 6.94971e-08, 8.07037e-08, 6.72536e-08, 8.07037e-08, 1.99987, 2.50011, 2.00017, 2.49979, 2.00012, 2.00058, 2.00019, 2.0003, 1.99992, 2.00082, 2.00017, 2.00061, 1.00008, 1.00012, 1.00006, 1.00012, 0, 2.25065, 0, 2.25071, 1.50021, 1.83317, 1.50026, 1.8336, 0, 2.16702, 1.50024, 2.1667, 0.000405905, 1.00017, 0.000231993, 1.00017] 6: [2.50018, 2.0003, 2.66686, 2.00023, 2.00031, 2.00022, 2.16675, 2.00023, 2.00026, 2.0002, 2.16698, 2.00023, 1.00017, 1.00017, 1.50012, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 7.84626e-08, 8.07038e-08, 8.07037e-08, 8.0703e-08, 2.50008, 2.00031, 2.50012, 2.00023, 2.00015, 2.00009, 2.00026, 2.00023, 2.00024, 2.00019, 2.00029, 2.00023, 1.00012, 1.00012, 1.00014, 1.00012, 0, 2.00022, 0, 2.00023, 2.0001, 2.00022, 2.00015, 2.00023, 0, 2.00017, 2.33359, 2.00023, 1.00015, 1.00019, 1.00017, 1.00012] 6: [1.00006, 2.00008, 1.00029, 2.00008, 2.00019, 2.5001, 2.0004, 2.50032, 2.00014, 2.83356, 2.00046, 2.83342, 2.00019, 2.49989, 2.33365, 2.50016, 1.00006, 2.00008, 1.00029, 2.00008, 2.00019, 2.50007, 2.00024, 2.50019, 2.00014, 2.50012, 2.0003, 2.50028, 2.00017, 2.50009, 2.00034, 2.50024, 9.41499e-08, 1, 0.000231997, 1, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.50009, 1.00023, 1.50009, 1.00012, 1.5001, 1.00023, 1.5001, 0, 2.00015, 0, 2.00015, 2.00027, 2.50027, 2.00027, 2.50032, 0, 2.66717, 2.00049, 2.66703, 2.00019, 2.75013, 2.00032, 2.75031] 6: [2.00008, 1.00012, 2.00008, 1.00035, 2.50104, 2.00023, 2.50061, 2.00065, 2.83378, 2.00023, 2.83289, 2.00044, 2.4999, 2.00023, 2.83322, 2, 2.00008, 1.00012, 2.00008, 1.00035, 2.49899, 2.00023, 2.50021, 2.00046, 2.50035, 2.00023, 2.50047, 2.0007, 2.50046, 2.00023, 2.49993, 1.99999, 1, 1.07606e-07, 1, 0.000232029, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 0, 1.00012, 0, 1.00019, 2.24884, 2.00023, 2.25009, 2.00038, 0, 2.00023, 2.75032, 2.00053, 2.75171, 2.00023, 2.75005, 2.0003] 6: [1.00029, 2.00008, 1.00006, 2.00008, 2.00044, 2.50061, 2.00019, 2.50017, 2.00064, 2.83385, 2.00015, 2.83395, 2.33361, 2.8334, 2.00019, 2.83417, 1.00029, 2.00008, 1.00006, 2.00008, 1.99983, 2.5, 2.00019, 2.49991, 2.00033, 2.5005, 2.00015, 2.50035, 2.00024, 2.49962, 2.00017, 2.50013, 0.000231997, 1, 9.41494e-08, 1, 1.00023, 1.5001, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.5001, 0, 2.00015, 0, 2.00015, 2.00009, 2.49978, 2.00031, 2.50039, 0, 2.75023, 2.00031, 2.75051, 2.00037, 2.75082, 2.00023, 2.75076] 6: [2.00008, 1.00035, 2.00008, 1.00012, 2.4995, 1.99981, 2.49937, 2.00023, 2.83358, 1.99998, 2.83366, 2.00023, 2.50002, 2.0011, 2.83402, 2.00023, 2.00008, 1.00035, 2.00008, 1.00012, 2.50081, 2.00028, 2.50036, 2.00023, 2.50058, 2.00047, 2.50006, 2.00023, 2.49947, 2.00005, 2.5005, 2.00023, 1, 0.000232029, 1, 1.07606e-07, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 0, 1.00019, 0, 1.00012, 2.25105, 1.9998, 2.25074, 2.00023, 0, 2.00016, 2.75022, 2.00023, 2.7497, 1.99981, 2.75082, 2.00023] 6: [2.00019, 2.50023, 2.00034, 2.50023, 1.00012, 1.00012, 1.00012, 1.00012, 2.00015, 2.33368, 2.00024, 2.33348, 2.00023, 2.00025, 2.33331, 2.00011, 2.00019, 2.50056, 2.00024, 2.50051, 1.00012, 1.00012, 1.00012, 1.00012, 2.00015, 2.00049, 2.00013, 2.00013, 2.00019, 2.00083, 2.00043, 2.00035, 1.00012, 1.50011, 1.00023, 1.50011, 8.07051e-08, 8.29459e-08, 8.07051e-08, 8.29459e-08, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 0, 2.25019, 0, 2.25003, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00037, 2.00006, 2.0002, 2.00012, 2.33344, 2.00038, 2.33343] 6: [2.50005, 2.00023, 2.50003, 2.00059, 1.00012, 1.00012, 1.00012, 1.00012, 2.33368, 2.00023, 2.33378, 2.00063, 2.00066, 2.00023, 2.33397, 2.00136, 2.5005, 2.00023, 2.50015, 2.00038, 1.00012, 1.00012, 1.00012, 1.00012, 2.00004, 2.00023, 2.00016, 2.00001, 2.00006, 2.00023, 2.00001, 2.00042, 1.5001, 1.00012, 1.5001, 1.00023, 8.29459e-08, 8.0703e-08, 8.29454e-08, 8.07035e-08, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 0, 2.00023, 0, 1.99973, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00023, 2.33347, 2.00019, 2.33328, 2.00023, 2.33343, 1.99999] 6: [2.00056, 2.50014, 2.00019, 2.49958, 1.00012, 1.00012, 1.00012, 1.00012, 2.00006, 2.33362, 2.00019, 2.33337, 2.3343, 2.33357, 2.00023, 2.33342, 2.00018, 2.50034, 2.00019, 2.50037, 1.00012, 1.00012, 1.00012, 1.00012, 2.00032, 2.00055, 2.00019, 2.00023, 2.0004, 2.00013, 2.00019, 2.00036, 1.00023, 1.50011, 1.00012, 1.50011, 8.07051e-08, 8.29454e-08, 8.07041e-08, 8.29454e-08, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 0, 2.25028, 0, 2.24995, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.33354, 2.00019, 2.33318, 2.00003, 2.33337, 2.00015, 2.33358] 6: [2.50025, 2.0007, 2.50054, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 2.33332, 2.00047, 2.33331, 2.00023, 1.99993, 2, 2.33346, 2.00023, 2.49991, 2.00016, 2.50009, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 1.99995, 2.00021, 1.99999, 2.00023, 2.00048, 2.00034, 2.00012, 2.00023, 1.5001, 1.00023, 1.5001, 1.00012, 8.29459e-08, 8.07035e-08, 8.29454e-08, 8.0703e-08, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 0, 2.00035, 0, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 0, 2.00032, 2.33339, 2.00023, 2.33325, 2.00029, 2.33367, 2.00023] 6: [2.00015, 2.66681, 2.00023, 2.66683, 2.00017, 2.16677, 2.00014, 2.16646, 1, 1.50005, 1.00014, 1.50005, 2.00017, 2.16618, 2.33368, 2.16785, 2.00015, 2.4999, 2.00016, 2.50043, 2.00017, 2.00049, 2.00006, 2.00006, 1, 1.00008, 1.00002, 1.00008, 2.00015, 2.00054, 2.00019, 2.00017, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 6.72494e-08, 7.62181e-08, 7.17359e-08, 7.62181e-08, 1.00012, 1.00014, 1.00012, 1.00014, 0, 2.33287, 0, 2.334, 2.00027, 1.99982, 1.9996, 2.00004, 0, 1.00023, 1.00023, 1.00023, 2.00019, 2.25043, 2.00002, 2.25041] 6: [2.66678, 2.00023, 2.66684, 1.99996, 2.16663, 2.00023, 2.16688, 2.00035, 1.50003, 1.00012, 1.50008, 1.00023, 2.16681, 2.00023, 2.50025, 1.99999, 2.49996, 2.00023, 2.50054, 2.00055, 1.99979, 2.00023, 2.00015, 1.99984, 1.00006, 1.00012, 1.00012, 1.00012, 2.00015, 2.00023, 2.00023, 2.00054, 1.50009, 1.00012, 1.5001, 1.00023, 1.00014, 1.00012, 1.00014, 1.00012, 7.62181e-08, 8.07035e-08, 8.74287e-08, 8.07043e-08, 1.00014, 1.00012, 1.00014, 1.00012, 0, 2.00023, 0, 2.00035, 2.00044, 2.00023, 2.16692, 2.00048, 0, 1.00012, 1.50013, 1.00017, 2.50006, 2.00023, 2.50012, 2.00032] 6: [1.99979, 2.66691, 2.00017, 2.66719, 2.00035, 2.16713, 2.00021, 2.16689, 1.00014, 1.5001, 1.00006, 1.5001, 2.33324, 2.50006, 2.00021, 2.49986, 2.00033, 2.50037, 2.00017, 2.49914, 2.00054, 2.00034, 2.00021, 2.00045, 1.00002, 1.00014, 1.00006, 1.00014, 2.00025, 2.00034, 2.00017, 1.99971, 1.00023, 1.50011, 1.00012, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 7.17359e-08, 8.74287e-08, 8.07041e-08, 8.74287e-08, 1.00012, 1.00014, 1.00012, 1.00014, 0, 2.50037, 0, 2.50033, 1.99984, 2.1669, 2.00019, 2.16701, 0, 1.50012, 1.00012, 1.50012, 2.00031, 2.50012, 2.00015, 2.49991] 6: [2.66695, 2.00039, 2.66682, 2.00023, 2.16697, 2.00034, 2.16691, 2.00023, 1.50003, 1.00023, 1.50008, 1.00012, 2.16699, 2.00052, 2.50035, 2.00023, 2.50039, 2.00049, 2.50029, 2.00023, 2.00021, 2.00031, 2.00027, 2.00023, 1.00006, 1.00012, 1.00012, 1.00012, 2.00025, 2.00046, 2.0003, 2.00023, 1.50009, 1.00023, 1.5001, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 7.62181e-08, 8.07043e-08, 8.74287e-08, 8.07035e-08, 1.00014, 1.00012, 1.00014, 1.00012, 0, 2.00035, 0, 2.00023, 2.00013, 2.00034, 2.16687, 2.00023, 0, 1.00017, 1.50013, 1.00012, 2.50033, 2.0004, 2.50012, 2.00023] 6: [2.00019, 2.50012, 2.16681, 2.49995, 2.00023, 2.00035, 2.16674, 2.00025, 2.00015, 2.33322, 2.16659, 2.33358, 1.00012, 1.00019, 1.50012, 1.00019, 2.00017, 2.49994, 2.00047, 2.49977, 2.00021, 2.0001, 2.00009, 2.00005, 2.00014, 1.99988, 2.00022, 2.00046, 1.00006, 1.00012, 1.00008, 1.00012, 1.00012, 1.50011, 1.00023, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 8.07046e-08, 8.51878e-08, 8.29469e-08, 8.51878e-08, 0, 2.5002, 0, 2.50008, 2.00014, 2.1669, 1.9998, 2.16677, 0, 2.25011, 2.00029, 2.25036, 1.00006, 1.5001, 1.00019, 1.5001] 6: [2.50057, 2.00023, 2.66699, 2.00057, 2.00058, 2.00023, 2.16726, 2.00047, 2.33312, 2.00023, 2.50033, 2.00037, 1.00019, 1.00012, 1.50014, 1.00017, 2.49999, 2.00023, 2.49968, 2.0005, 2.00091, 2.00023, 2.00048, 2.00072, 2.00015, 2.00023, 2.00008, 2.00025, 1.0001, 1.00012, 1.00012, 1.00012, 1.5001, 1.00012, 1.5001, 1.00023, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 8.51878e-08, 8.0703e-08, 8.74287e-08, 8.07043e-08, 0, 2.00023, 0, 2.00023, 2.16684, 2.00023, 2.16676, 2.00036, 0, 2.00023, 2.49965, 2.0002, 1.50006, 1.00012, 1.50008, 1.00023] 6: [2.16695, 2.66692, 2.00019, 2.66682, 2.16692, 2.16698, 2.00023, 2.16693, 2.16703, 2.50026, 2.00019, 2.50015, 1.50008, 1.5001, 1.00012, 1.5001, 2.00035, 2.50028, 2.00017, 2.50029, 2.00012, 2.00008, 2.00021, 1.99987, 2.00008, 2.00034, 2.00017, 2.00025, 1.00008, 1.00014, 1.00006, 1.00014, 1.00023, 1.50011, 1.00012, 1.50011, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 8.29469e-08, 8.74287e-08, 8.07035e-08, 8.74287e-08, 0, 2.50026, 0, 2.50029, 2.00013, 2.16701, 2.00017, 2.16692, 0, 2.50025, 2.00017, 2.50017, 1.00019, 1.50011, 1.00006, 1.50011] 6: [2.50022, 2.00036, 2.6668, 2.00023, 2.00021, 2.00029, 2.16695, 2.00023, 2.3335, 2.00036, 2.50021, 2.00023, 1.00019, 1.00017, 1.50014, 1.00012, 2.50023, 2.00037, 2.50022, 2.00023, 2.00011, 2.00015, 2.00036, 2.00023, 2.00024, 2.00016, 2.00021, 2.00023, 1.0001, 1.00012, 1.00012, 1.00012, 1.5001, 1.00023, 1.5001, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 1.00014, 1.00012, 8.51878e-08, 8.07043e-08, 8.74287e-08, 8.0703e-08, 0, 2.00032, 0, 2.00023, 2.16686, 2.0003, 2.16688, 2.00023, 0, 2.00032, 2.50019, 2.00023, 1.50006, 1.00023, 1.50008, 1.00012] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [2.00015, 1.00012, 2.00015, 1.00019, 2.2505, 2.00023, 2.25051, 2.00038, 3.00036, 2.00023, 3.00047, 2.00056, 2.50049, 2.00023, 3.00039, 2.00052, 2.00015, 1.00012, 2.00015, 1.00019, 2.25106, 2.00023, 2.24998, 2.00025, 2.33387, 2.00023, 2.50029, 2.00021, 2.2503, 2.00023, 2.2504, 2.00048, 2.00015, 1.00012, 2.00015, 1.00019, 2.25032, 2.00023, 2.25025, 2.00038, 2.33356, 2.00023, 2.50011, 2.00014, 2.50003, 2.00023, 2.50019, 2.00048, 0, 8.06973e-08, 0, 8.06999e-08, 1.00015, 1.00012, 1.00023, 1.00012, 0, 1.00012, 2.00012, 1.00015, 2.00008, 1.00012, 2.00012, 1.00019] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [2.00015, 1.00019, 2.00015, 1.00012, 2.24976, 2.00063, 2.25045, 2.00023, 3.00056, 2.00053, 2.99998, 2.00023, 2.50057, 2.00091, 3.00023, 2.00023, 2.00015, 1.00019, 2.00015, 1.00012, 2.24978, 2.00064, 2.25097, 2.00023, 2.33369, 2.00029, 2.50001, 2.00023, 2.25043, 2.00044, 2.25007, 2.00023, 2.00015, 1.00019, 2.00015, 1.00012, 2.25001, 2.00075, 2.25056, 2.00023, 2.33429, 2.00028, 2.49982, 2.00023, 2.50021, 2.00051, 2.50035, 2.00023, 0, 8.06999e-08, 0, 8.06973e-08, 1.00015, 1.00012, 1.00023, 1.00012, 0, 1.00015, 2.00012, 1.00012, 2.00008, 1.00019, 2.00012, 1.00012] 6: [2.00027, 2.25008, 2.00041, 2.25022, 1.00012, 1.00012, 1.00012, 1.00012, 2.00023, 2.25008, 2.00044, 2.25043, 2.00014, 2.16703, 2.33343, 2.16684, 2.00023, 2.24996, 2.00054, 2.24991, 1.00012, 1.00012, 1.00012, 1.00012, 2.00019, 2.00019, 2.00013, 2.00007, 1.50021, 2.0003, 1.50027, 1.99992, 2.00027, 2.24993, 2.00036, 2.25037, 1.00012, 1.00012, 1.00012, 1.00012, 2.00027, 2.00035, 2.00039, 1.99995, 2.00014, 2.16673, 2.00013, 2.16696, 0, 1.00015, 0, 1.00015, 5.37973e-08, 6.50082e-08, 5.82829e-08, 6.50082e-08, 0, 1.00019, 1.00015, 1.00019, 1, 1.50004, 1.00014, 1.50004] 6: [2.50038, 2.00023, 2.50027, 2.00013, 1.00012, 1.00012, 1.00012, 1.00012, 2.50014, 2.00023, 2.50013, 2.00033, 2.16703, 2.00023, 2.50012, 1.99982, 2.50014, 2.00023, 2.50009, 2.00025, 1.00012, 1.00012, 1.00012, 1.00012, 2.00029, 2.00023, 2.16699, 2.0003, 1.83362, 2.00023, 1.83368, 2.00055, 2.50028, 2.00023, 2.50025, 2.00025, 1.00012, 1.00012, 1.00012, 1.00012, 2.00028, 2.00023, 2.16692, 2.00024, 2.16687, 2.00023, 2.16701, 2.00022, 0, 1.00012, 0, 1.00012, 6.50082e-08, 8.07046e-08, 7.62178e-08, 8.07038e-08, 0, 1.00012, 1.5001, 1.00017, 1.50004, 1.00012, 1.50009, 1.00023] 6: [2.00036, 2.24974, 2.00031, 2.25041, 1.00012, 1.00012, 1.00012, 1.00012, 2.00007, 2.49988, 2.00015, 2.50025, 2.33293, 2.49938, 2.00017, 2.50021, 1.99992, 2.25086, 2.00027, 2.25032, 1.00012, 1.00012, 1.00012, 1.00012, 2.00009, 2.16702, 2.00014, 2.16683, 1.50037, 2.00005, 1.50026, 2.00049, 2.00023, 2.25028, 2.00031, 2.25001, 1.00012, 1.00012, 1.00012, 1.00012, 2.00053, 2.16694, 2.00019, 2.16697, 2.0002, 2.16689, 2.00017, 2.16651, 0, 1.00023, 0, 1.00023, 5.82829e-08, 7.62178e-08, 6.72499e-08, 7.62178e-08, 0, 1.50008, 1.00006, 1.50008, 1.00014, 1.50009, 1.00006, 1.50009] 6: [2.49975, 2.00045, 2.50019, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 2.49997, 2.00027, 2.50033, 2.00023, 2.16734, 1.99973, 2.50056, 2.00023, 2.50058, 2.00048, 2.50005, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 2.00029, 2, 2.16696, 2.00023, 1.83355, 2.00007, 1.83357, 2.00023, 2.50025, 2.0003, 2.50033, 2.00023, 1.00012, 1.00012, 1.00012, 1.00012, 2.00041, 1.99986, 2.16677, 2.00023, 2.16692, 2.00027, 2.16703, 2.00023, 0, 1.00012, 0, 1.00012, 6.50082e-08, 8.07038e-08, 7.62178e-08, 8.07046e-08, 0, 1.00017, 1.5001, 1.00012, 1.50004, 1.00023, 1.50009, 1.00012] 6: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 6: [3.00056, 2.00023, 3.00032, 2.00053, 2.25017, 2.00023, 2.50023, 2.00053, 2.00004, 1.00012, 2.00004, 1.00027, 2.50035, 2.00023, 3.00017, 2.00053, 2.66665, 2.00023, 2.75012, 2.00031, 1.99977, 2.00023, 2.33367, 2.00042, 1.00019, 1.00012, 1.50008, 1.00017, 2.00047, 2.00023, 2.16688, 1.99996, 2.66773, 2.00023, 2.75067, 2.00047, 1.99991, 2.00023, 2.33346, 2.00031, 1.00023, 1.00012, 1.50012, 1.00017, 2.25042, 2.00023, 2.49997, 2.00042, 0, 1.00012, 0, 1.00015, 1.00019, 1.00012, 1.50008, 1.00017, 0, 9.41514e-08, 1, 0.000116057, 2.00008, 1.00012, 2.00006, 1.00027] 6: [2.00012, 3.00054, 2.00027, 2.99992, 1.99983, 2.50042, 2.00017, 2.50003, 1.00039, 2.00006, 1.00006, 2.00006, 2.50037, 3.00087, 2.00015, 2.9993, 2.00078, 2.74993, 2.00023, 2.75021, 1.99991, 2.33367, 2.00015, 2.3334, 1.00015, 1.50011, 1.00006, 1.50011, 1.5003, 2.33365, 1.50024, 2.33365, 2.00029, 2.75062, 2.00031, 2.75038, 1.99937, 2.33373, 2.00019, 2.33364, 1.00023, 1.50013, 1.00012, 1.50013, 2.00047, 2.50063, 2.00017, 2.50025, 0, 2.00012, 0, 2.00012, 1.00015, 1.5001, 1.00006, 1.5001, 0, 1, 9.41442e-08, 1, 1.00039, 2.00006, 1.00006, 2.00006] 6: [3.00056, 2.00029, 3.00015, 2.00023, 2.25068, 2.00012, 2.50056, 2.00023, 2.00004, 1.00027, 2.00004, 1.00012, 2.49935, 2.00032, 3.00032, 2.00023, 2.66675, 2.00037, 2.75066, 2.00023, 2.00074, 1.9999, 2.33301, 2.00023, 1.00019, 1.00017, 1.50008, 1.00012, 2.00015, 2.00015, 2.16691, 2.00023, 2.66467, 2.00014, 2.75022, 2.00023, 2.00107, 2.00007, 2.33301, 2.00023, 1.00023, 1.00017, 1.50012, 1.00012, 2.25023, 2.00004, 2.49983, 2.00023, 0, 1.00015, 0, 1.00012, 1.00019, 1.00017, 1.50008, 1.00012, 0, 0.000116057, 1, 9.41514e-08, 2.00008, 1.00027, 2.00006, 1.00012] 6: [2.00019, 2.75014, 2.33323, 2.75054, 2.00012, 2.3336, 2.16703, 2.33399, 2.00015, 2.75028, 2.25028, 2.75033, 1.00006, 1.50012, 1.50016, 1.50012, 1.00046, 2.2501, 1.0004, 2.2501, 1.50021, 2.00021, 1.50019, 2.00025, 1.00043, 2.00032, 1.25062, 2.00022, 0.000231977, 1.00015, 0.000405905, 1.00015, 2.00019, 2.75019, 2.00002, 2.74987, 2.00012, 2.33359, 2.00099, 2.33352, 2.00019, 2.49983, 2.00039, 2.49981, 1.00006, 1.50006, 1.00019, 1.50006, 0, 2.00008, 0, 2.00008, 1, 1.50004, 1.00014, 1.50004, 0, 2.00008, 1.00039, 2.00008, 6.72473e-08, 1, 0.000231973, 1] 6: [2.74985, 2.00023, 3.00019, 2.0002, 2.33317, 2.00023, 2.50045, 2.00017, 2.75046, 2.00023, 3.00011, 2.00016, 1.50015, 1.00012, 2.00008, 1.00029, 2.50041, 2.00023, 2.50089, 2.00032, 2.16673, 2.00023, 2.16745, 2.00055, 2.00017, 2.00023, 2.33318, 2.00043, 1.00015, 1.00012, 1.00017, 1.00019, 2.74994, 2.00023, 2.74983, 2.00029, 2.3335, 2.00023, 2.33366, 2.00009, 2.25017, 2.00023, 2.49996, 2.00027, 1.5001, 1.00012, 1.50011, 1.00023, 0, 1.00012, 0, 1.00019, 1.50004, 1.00012, 1.50009, 1.00023, 0, 1.00012, 2.00006, 1.00027, 1, 1.07607e-07, 1, 0.000232033] 6: [2.33337, 2.99973, 2.00023, 3, 2.16732, 2.4999, 2.00015, 2.49994, 2.2504, 3.00068, 2.00012, 3.00019, 1.50012, 2.00002, 1.00006, 2.00002, 1.00095, 2.24989, 1.00054, 2.25027, 1.50062, 1.99991, 1.50026, 2.00041, 1.25023, 2.16697, 1.50023, 2.16669, 0.000405909, 1.00017, 0.000231993, 1.00017, 2.00129, 2.75008, 2.00023, 2.7502, 2.00038, 2.33321, 2.00015, 2.33339, 1.99999, 2.49997, 2.00015, 2.50056, 1.00019, 1.50008, 1.00006, 1.50008, 0, 2.00012, 0, 2.00012, 1.00014, 1.50009, 1.00006, 1.50009, 0, 2.00006, 1.00006, 2.00006, 0.000231973, 1, 8.07004e-08, 1] 6: [2.75035, 2.00021, 3, 2.00023, 2.3334, 2.00039, 2.49994, 2.00023, 2.74999, 2.00034, 2.99996, 2.00023, 1.50015, 1.00029, 2.00008, 1.00012, 2.50014, 2.00014, 2.50011, 2.00023, 2.16633, 2.00021, 2.16649, 2.00023, 2.00034, 2.0003, 2.33363, 2.00023, 1.00015, 1.00019, 1.00017, 1.00012, 2.75019, 2.00008, 2.7501, 2.00023, 2.33341, 2.0003, 2.33346, 2.00023, 2.2501, 2.00005, 2.50008, 2.00023, 1.5001, 1.00023, 1.50011, 1.00012, 0, 1.00019, 0, 1.00012, 1.50004, 1.00023, 1.50009, 1.00012, 0, 1.00027, 2.00006, 1.00012, 1, 0.000232033, 1, 1.07607e-07] 6: ] 6: Compute joint node-pairs likelihood....: 6: [ ] 0% [>>>>>>>>> ] 25% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 75% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% Done. 12/13 Test #6: test_mapping_codon ............... Passed 39.89 sec 10: Optimizing... / 1 Optimizing... - 2 Optimizing... \ 3 Optimizing... - 4 Optimizing... / 5 Optimizing... - 6 Optimizing... \ 7 Optimizing... - 8 Optimizing... / 9 Optimizing... - 10 Optimizing... \ 11 Optimizing... - 12 10: 10: 0.500605 0.500881 10: 0.0204322 0.0201319 10: 0.782413 0.786025 10: 0.542957 0.582757 10: 0.907979 0.90946 13/13 Test #10: test_simulations ................. Passed 43.84 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 46.88 sec make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Tree.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/NNISearchable.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RE08.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/InMixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/G2001.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWrappedModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/TS98.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/WrappedModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/L95.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/F84.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/K80.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/T92.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AnonymousSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KCM.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/GY94.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/MG94.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YN98.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/SENCA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/Coala.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JTT92.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JCprot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG08.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/WAG01.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/DSO78.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/StateMap.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/NodeTemplate.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TopologySearch.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/PhyloStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/OptimizationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplate.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/MutationProcess.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/AncestralStateReconstruction.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/NeighborJoining.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/BioNJ.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceMethod.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/PGMA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/App -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/BipartitionList.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Reward.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Mapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionMethods.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionReward.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTree.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/Nhx.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTreeFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/Newick.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/NexusIoTree.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplateTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/NNITopologySearch.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/SitePatterns.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RASTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/BipartitionTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/PatternTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Node.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12 debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-phyl-dev PKGSHL=libbpp-phyl12 install -d -m 755 debian/libbpp-phyl-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-dev/usr/include install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 6298dac6a8f267ae514f87ff19a772406a1eb4e1 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libbpp-phyl-dev (in debian/libbpp-phyl-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl12 (in debian/libbpp-phyl12); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl12-dbgsym (in debian/.debhelper/libbpp-phyl12/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libbpp-phyl-dev/DEBIAN/control, package libbpp-phyl-dev, directory debian/libbpp-phyl-dev Searching for duplicated docs in dependency libbpp-phyl12... pkgstripfiles: processing control file: debian/libbpp-phyl12/DEBIAN/control, package libbpp-phyl12, directory debian/libbpp-phyl12 INFO: pkgstripfiles: waiting for lock (libbpp-phyl12) ... symlinking changelog.Debian.gz in libbpp-phyl-dev to file in libbpp-phyl12 pkgstripfiles: processing control file: debian/.debhelper/libbpp-phyl12/dbgsym-root/DEBIAN/control, package libbpp-phyl12-dbgsym, directory debian/.debhelper/libbpp-phyl12/dbgsym-root dpkg-deb: building package 'libbpp-phyl12-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-phyl12/libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-dev' in '../libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/libbpp-phyl12/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl12 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl12' in '../libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb'. Renaming libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.deb to libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.ddeb dpkg-genbuildinfo --build=any -O../libbpp-phyl_2.4.1-7ubuntu1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbpp-phyl_2.4.1-7ubuntu1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-07-19T18:20:50Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-phyl_2.4.1-7ubuntu1_armhf.changes: ----------------------------------------- Format: 1.8 Date: Tue, 19 Jul 2022 08:31:20 -0700 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl12 Built-For-Profiles: noudeb Architecture: armhf Version: 2.4.1-7ubuntu1 Distribution: kinetic-proposed Urgency: low Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: libbpp-phyl-dev - Bio++ Phylogenetic library development files libbpp-phyl12 - Bio++ Phylogenetic library Changes: libbpp-phyl (2.4.1-7ubuntu1) kinetic; urgency=low . * Merge from Debian unstable. Remaining changes: - Build without LTO on s390x and arm64 as this causes misbehavior that breaks bppsuite. Checksums-Sha1: cb086b58fa36cda86c2c72611a6ecfcf27d23578 3482168 libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb 983bd6721409e73b2dd2b21f9e2ec719eb8f424b 35458212 libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.ddeb b11d5b1b8c08fff0658e62df1fdcae1a0a19cbbc 1568040 libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb b934b54467b62ffd5b56d544591d2bf4aee08ce7 7390 libbpp-phyl_2.4.1-7ubuntu1_armhf.buildinfo Checksums-Sha256: 75a4d08659aae21ca2a4a4901fd5338765d20e7501ed9f087a21ef7b6e39d813 3482168 libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb 933bcbe433041860fb823a0939ef2a4253db448d4907082a5d53f4deb87d7e15 35458212 libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.ddeb cee7943f45df4ce6f7f8c91727045549b817cbcbdd32ef3bb4c859e0df05a7d5 1568040 libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb d4009368b88c1bc33470f07c13bb479ce13fbe1fb9917ac4dbe6d587df40b604 7390 libbpp-phyl_2.4.1-7ubuntu1_armhf.buildinfo Files: e94412be866377606c1a0675f9ccf613 3482168 libdevel optional libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb 540a6770f50ba3fb8c7af49e78386dab 35458212 debug optional libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.ddeb b13f3c8957d9c5b1f2fa42beea2c5cea 1568040 libs optional libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb 00294b75eddb05c9bf873f494cdf578f 7390 science optional libbpp-phyl_2.4.1-7ubuntu1_armhf.buildinfo Original-Maintainer: Debian Med Packaging Team /<>/libbpp-phyl_2.4.1-7ubuntu1_armhf.changes.new could not be renamed to /<>/libbpp-phyl_2.4.1-7ubuntu1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl12 libbpp-phyl12-dbgsym Architecture: armhf Version: 2.4.1-7ubuntu1 Checksums-Md5: e94412be866377606c1a0675f9ccf613 3482168 libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb 540a6770f50ba3fb8c7af49e78386dab 35458212 libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.ddeb b13f3c8957d9c5b1f2fa42beea2c5cea 1568040 libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb Checksums-Sha1: cb086b58fa36cda86c2c72611a6ecfcf27d23578 3482168 libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb 983bd6721409e73b2dd2b21f9e2ec719eb8f424b 35458212 libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.ddeb b11d5b1b8c08fff0658e62df1fdcae1a0a19cbbc 1568040 libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb Checksums-Sha256: 75a4d08659aae21ca2a4a4901fd5338765d20e7501ed9f087a21ef7b6e39d813 3482168 libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb 933bcbe433041860fb823a0939ef2a4253db448d4907082a5d53f4deb87d7e15 35458212 libbpp-phyl12-dbgsym_2.4.1-7ubuntu1_armhf.ddeb cee7943f45df4ce6f7f8c91727045549b817cbcbdd32ef3bb4c859e0df05a7d5 1568040 libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Tue, 19 Jul 2022 18:20:48 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), apt (= 2.5.1), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.90.20220713-2ubuntu1), binutils-arm-linux-gnueabihf (= 2.38.90.20220713-2ubuntu1), binutils-common (= 2.38.90.20220713-2ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), cmake (= 3.23.2-1ubuntu1), cmake-data (= 3.23.2-1ubuntu1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-4ubuntu1), d-shlibs (= 0.104), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.8ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-4ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-4ubuntu1), gcc-11-base (= 11.3.0-4ubuntu1), gcc-12-base (= 12.1.0-5ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), gpgv (= 2.2.27-3ubuntu3), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapt-pkg6.0 (= 2.5.1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan6 (= 11.3.0-4ubuntu1), libatomic1 (= 12.1.0-5ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.90.20220713-2ubuntu1), libblkid1 (= 2.38-4ubuntu1), libbpp-core-dev (= 2.4.1-8), libbpp-core4 (= 2.4.1-8), libbpp-seq-dev (= 2.4.1-7), libbpp-seq12 (= 2.4.1-7), libbrotli1 (= 1.0.9-2build6), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-5ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.38.90.20220713-2ubuntu1), libctf0 (= 2.38.90.20220713-2ubuntu1), libcurl4 (= 7.84.0-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.8ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-4ubuntu1), libgcc-s1 (= 12.1.0-5ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-5ubuntu1), libgpg-error0 (= 1.45-2), libgssapi-krb5-2 (= 1.19.2-2), libhogweed6 (= 3.7.3-1build2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1), libisl23 (= 0.25-1), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-1), libprocps8 (= 2:3.3.17-6ubuntu2), libpsl5 (= 0.21.0-1.2build2), librhash0 (= 1.4.2-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1), libsepol2 (= 3.4-2), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.4-1ubuntu1), libstdc++-11-dev (= 11.3.0-4ubuntu1), libstdc++6 (= 12.1.0-5ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.2-2ubuntu1), libtasn1-6 (= 4.18.0-4build1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libubsan1 (= 12.1.0-5ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.2-2ubuntu1), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.1-2), libxml2 (= 2.9.14+dfsg-1), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-9.9), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 29), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-6ubuntu2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), ubuntu-keyring (= 2021.03.26), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1658244680" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-phyl-dev_2.4.1-7ubuntu1_armhf.deb ---------------------------------------- new Debian package, version 2.0. size 3482168 bytes: control archive=6709 bytes. 982 bytes, 21 lines control 19519 bytes, 223 lines md5sums Package: libbpp-phyl-dev Source: libbpp-phyl Version: 2.4.1-7ubuntu1 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 30134 Depends: libbpp-phyl12 (= 2.4.1-7ubuntu1), libbpp-core-dev, libbpp-seq-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetic library development files Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes for phylogenetics. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2022-07-19 15:31 ./ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/ -rw-r--r-- root/root 3681 2018-08-13 09:51 ./usr/include/Bpp/Phyl/AncestralStateReconstruction.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/App/ -rw-r--r-- root/root 31125 2018-08-13 09:51 ./usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h -rw-r--r-- root/root 7990 2018-08-13 09:51 ./usr/include/Bpp/Phyl/BipartitionList.h -rw-r--r-- root/root 6470 2018-08-13 09:51 ./usr/include/Bpp/Phyl/BipartitionTools.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Distance/ -rw-r--r-- root/root 7601 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h -rw-r--r-- root/root 3862 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/BioNJ.h -rw-r--r-- root/root 18923 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/DistanceEstimation.h -rw-r--r-- root/root 3353 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/DistanceMethod.h -rw-r--r-- root/root 3978 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h -rw-r--r-- root/root 4163 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/NeighborJoining.h -rw-r--r-- root/root 4060 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/PGMA.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Graphics/ -rw-r--r-- root/root 3284 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h -rw-r--r-- root/root 12400 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h -rw-r--r-- root/root 3423 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/CladogramPlot.h -rw-r--r-- root/root 3351 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h -rw-r--r-- root/root 11685 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/TreeDrawing.h -rw-r--r-- root/root 6574 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h -rw-r--r-- root/root 8890 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Io/ -rw-r--r-- root/root 4567 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h -rw-r--r-- root/root 3291 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h -rw-r--r-- root/root 3291 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h -rw-r--r-- root/root 3192 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h -rw-r--r-- root/root 7953 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h -rw-r--r-- root/root 3621 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h -rw-r--r-- root/root 3235 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h -rw-r--r-- root/root 3235 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h -rw-r--r-- root/root 4889 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h -rw-r--r-- root/root 3578 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h -rw-r--r-- root/root 4434 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h -rw-r--r-- root/root 3233 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h -rw-r--r-- root/root 4278 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h -rw-r--r-- root/root 4622 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h -rw-r--r-- root/root 3291 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h -rw-r--r-- root/root 7531 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoTree.h -rw-r--r-- root/root 3037 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoTreeFactory.h -rw-r--r-- root/root 6114 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/Newick.h -rw-r--r-- root/root 4349 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/NexusIoTree.h -rw-r--r-- root/root 8314 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/Nhx.h -rw-r--r-- root/root 3032 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Likelihood/ -rw-r--r-- root/root 5194 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h -rw-r--r-- root/root 9681 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h -rw-r--r-- root/root 9980 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 9945 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h -rw-r--r-- root/root 4829 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h -rw-r--r-- root/root 2829 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h -rw-r--r-- root/root 14460 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h -rw-r--r-- root/root 10807 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h -rw-r--r-- root/root 7304 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h -rw-r--r-- root/root 12091 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h -rw-r--r-- root/root 12466 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 3944 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h -rw-r--r-- root/root 3282 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h -rw-r--r-- root/root 7808 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h -rw-r--r-- root/root 4029 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h -rw-r--r-- root/root 4147 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h -rw-r--r-- root/root 7118 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h -rw-r--r-- root/root 8396 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h -rw-r--r-- root/root 4467 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 6184 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h -rw-r--r-- root/root 4263 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h -rw-r--r-- root/root 2576 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/RASTools.h -rw-r--r-- root/root 6335 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h -rw-r--r-- root/root 6764 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h -rw-r--r-- root/root 10924 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h -rw-r--r-- root/root 10136 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h -rw-r--r-- root/root 11312 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 3540 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h -rw-r--r-- root/root 13839 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h -rw-r--r-- root/root 4296 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h -rw-r--r-- root/root 4568 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Mapping/ -rw-r--r-- root/root 12487 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h -rw-r--r-- root/root 5372 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/DecompositionMethods.h -rw-r--r-- root/root 3948 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/DecompositionReward.h -rw-r--r-- root/root 4165 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h -rw-r--r-- root/root 4585 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h -rw-r--r-- root/root 7052 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/Mapping.h -rw-r--r-- root/root 6660 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h -rw-r--r-- root/root 4204 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h -rw-r--r-- root/root 5460 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h -rw-r--r-- root/root 6663 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h -rw-r--r-- root/root 6574 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/Reward.h -rw-r--r-- root/root 3228 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/RewardMapping.h -rw-r--r-- root/root 4801 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h -rw-r--r-- root/root 8275 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h -rw-r--r-- root/root 3705 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h -rw-r--r-- root/root 30913 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h -rw-r--r-- root/root 38069 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h -rw-r--r-- root/root 4555 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h -rw-r--r-- root/root 3734 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Model/ -rw-r--r-- root/root 5577 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h -rw-r--r-- root/root 4358 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h -rw-r--r-- root/root 4607 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h -rw-r--r-- root/root 7458 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h -rw-r--r-- root/root 6253 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h -rw-r--r-- root/root 16193 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h -rw-r--r-- root/root 8034 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h -rw-r--r-- root/root 7901 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AbstractWrappedModel.h -rw-r--r-- root/root 3011 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/AnonymousSubstitutionModel.h -rw-r--r-- root/root 5050 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Model/Codon/ -rw-r--r-- root/root 4685 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h -rw-r--r-- root/root 5255 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h -rw-r--r-- root/root 4487 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h -rw-r--r-- root/root 3855 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h -rw-r--r-- root/root 5249 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h -rw-r--r-- root/root 4491 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h -rw-r--r-- root/root 4320 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h -rw-r--r-- root/root 4690 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h -rw-r--r-- root/root 6191 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h -rw-r--r-- root/root 7560 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h -rw-r--r-- root/root 5114 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h -rw-r--r-- root/root 6334 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h -rw-r--r-- root/root 5817 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h -rw-r--r-- root/root 4831 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h -rw-r--r-- root/root 3498 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h -rw-r--r-- root/root 4108 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/GY94.h -rw-r--r-- root/root 3865 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/KCM.h -rw-r--r-- root/root 8297 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h -rw-r--r-- root/root 7202 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h -rw-r--r-- root/root 3903 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/MG94.h -rw-r--r-- root/root 4922 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/SENCA.h -rw-r--r-- root/root 3702 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h -rw-r--r-- root/root 4501 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YN98.h -rw-r--r-- root/root 3234 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M.h -rw-r--r-- root/root 3369 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h -rw-r--r-- root/root 3652 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h -rw-r--r-- root/root 3303 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h -rw-r--r-- root/root 3262 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h -rw-r--r-- root/root 3073 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h -rw-r--r-- root/root 3271 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h -rw-r--r-- root/root 3644 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Model/FrequenciesSet/ -rw-r--r-- root/root 14637 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h -rw-r--r-- root/root 12351 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h -rw-r--r-- root/root 4441 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h -rw-r--r-- root/root 5918 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h -rw-r--r-- root/root 4507 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h -rw-r--r-- root/root 7524 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h -rw-r--r-- root/root 4482 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h -rw-r--r-- root/root 5716 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/G2001.h -rw-r--r-- root/root 8504 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/InMixedSubstitutionModel.h -rw-r--r-- root/root 5423 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h -rw-r--r-- root/root 11767 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h -rw-r--r-- root/root 4325 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h -rw-r--r-- root/root 10723 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h -rw-r--r-- root/root 5976 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h -rw-r--r-- root/root 6911 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Model/Nucleotide/ -rw-r--r-- root/root 9394 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/F84.h -rw-r--r-- root/root 5972 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h -rw-r--r-- root/root 9216 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h -rw-r--r-- root/root 5910 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h -rw-r--r-- root/root 8366 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/K80.h -rw-r--r-- root/root 4200 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/L95.h -rw-r--r-- root/root 4420 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h -rw-r--r-- root/root 5604 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h -rw-r--r-- root/root 4634 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h -rw-r--r-- root/root 4409 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h -rw-r--r-- root/root 7825 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/T92.h -rw-r--r-- root/root 6308 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h -rw-r--r-- root/root 7409 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h -rw-r--r-- root/root 3642 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h -rw-r--r-- root/root 6526 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h -rw-r--r-- root/root 4152 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Model/Protein/ -rw-r--r-- root/root 4576 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/Coala.h -rw-r--r-- root/root 3954 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h -rw-r--r-- root/root 5260 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/DSO78.h -rw-r--r-- root/root 8554 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/JCprot.h -rw-r--r-- root/root 5182 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/JTT92.h -rw-r--r-- root/root 4991 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LG08.h -rw-r--r-- root/root 4020 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h -rw-r--r-- root/root 3961 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h -rw-r--r-- root/root 4038 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h -rw-r--r-- root/root 3778 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h -rw-r--r-- root/root 4069 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h -rw-r--r-- root/root 3801 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h -rw-r--r-- root/root 3982 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h -rw-r--r-- root/root 4182 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h -rw-r--r-- root/root 5892 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h -rw-r--r-- root/root 5157 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/Protein/WAG01.h -rw-r--r-- root/root 12982 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/RE08.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Model/RateDistribution/ -rw-r--r-- root/root 2275 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h -rw-r--r-- root/root 2424 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h -rw-r--r-- root/root 2400 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h -rw-r--r-- root/root 2412 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h -rw-r--r-- root/root 6983 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h -rw-r--r-- root/root 6872 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/StateMap.h -rw-r--r-- root/root 18846 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/SubstitutionModel.h -rw-r--r-- root/root 17727 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h -rw-r--r-- root/root 3642 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h -rw-r--r-- root/root 4149 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/TS98.h -rw-r--r-- root/root 4486 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h -rw-r--r-- root/root 2587 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Model/WrappedModel.h -rw-r--r-- root/root 4430 2018-08-13 09:51 ./usr/include/Bpp/Phyl/NNISearchable.h -rw-r--r-- root/root 5590 2018-08-13 09:51 ./usr/include/Bpp/Phyl/NNITopologySearch.h -rw-r--r-- root/root 18872 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Node.h -rw-r--r-- root/root 6424 2018-08-13 09:51 ./usr/include/Bpp/Phyl/NodeTemplate.h -rw-r--r-- root/root 34188 2018-08-13 09:51 ./usr/include/Bpp/Phyl/OptimizationTools.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Parsimony/ -rw-r--r-- root/root 3942 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h -rw-r--r-- root/root 3793 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h -rw-r--r-- root/root 9546 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h -rw-r--r-- root/root 6185 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h -rw-r--r-- root/root 3483 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h -rw-r--r-- root/root 3241 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h -rw-r--r-- root/root 3738 2018-08-13 09:51 ./usr/include/Bpp/Phyl/PatternTools.h -rw-r--r-- root/root 3691 2018-08-13 09:51 ./usr/include/Bpp/Phyl/PhyloStatistics.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/include/Bpp/Phyl/Simulation/ -rw-r--r-- root/root 8235 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h -rw-r--r-- root/root 2573 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h -rw-r--r-- root/root 12789 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/MutationProcess.h -rw-r--r-- root/root 10877 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h -rw-r--r-- root/root 4165 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h -rw-r--r-- root/root 2363 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h -rw-r--r-- root/root 2515 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/SiteSimulator.h -rw-r--r-- root/root 5513 2018-08-13 09:51 ./usr/include/Bpp/Phyl/SitePatterns.h -rw-r--r-- root/root 4172 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TopologySearch.h -rw-r--r-- root/root 14464 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Tree.h -rw-r--r-- root/root 7641 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeExceptions.h -rw-r--r-- root/root 19136 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeTemplate.h -rw-r--r-- root/root 44061 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeTemplateTools.h -rw-r--r-- root/root 28969 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeTools.h drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/lib/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/cmake/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/ -rw-r--r-- root/root 2881 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake -rw-r--r-- root/root 2311 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake -rw-r--r-- root/root 1515 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake -rw-r--r-- root/root 3946 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets.cmake -rw-r--r-- root/root 29174636 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.a lrwxrwxrwx root/root 0 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so -> libbpp-phyl.so.12 drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/share/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/share/doc/libbpp-phyl-dev/ lrwxrwxrwx root/root 0 2022-07-19 15:31 ./usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz -> ../libbpp-phyl12/changelog.Debian.gz -rw-r--r-- root/root 23165 2022-07-10 13:03 ./usr/share/doc/libbpp-phyl-dev/copyright libbpp-phyl12_2.4.1-7ubuntu1_armhf.deb -------------------------------------- new Debian package, version 2.0. size 1568040 bytes: control archive=931 bytes. 953 bytes, 20 lines control 238 bytes, 3 lines md5sums 40 bytes, 1 lines shlibs 72 bytes, 2 lines triggers Package: libbpp-phyl12 Source: libbpp-phyl Version: 2.4.1-7ubuntu1 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 5671 Depends: libbpp-core4 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.35), libgcc-s1 (>= 3.5), libstdc++6 (>= 11) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetic library Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the Bio++ classes for phylogenetics. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2022-07-19 15:31 ./ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/lib/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12 -> libbpp-phyl.so.12.0.0 -rw-r--r-- root/root 5768636 2022-07-19 15:31 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/share/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-07-19 15:31 ./usr/share/doc/libbpp-phyl12/ -rw-r--r-- root/root 1211 2022-07-19 15:31 ./usr/share/doc/libbpp-phyl12/changelog.Debian.gz -rw-r--r-- root/root 23165 2022-07-10 13:03 ./usr/share/doc/libbpp-phyl12/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 1089888 Build-Time: 1430 Distribution: kinetic-proposed Host Architecture: armhf Install-Time: 19 Job: libbpp-phyl_2.4.1-7ubuntu1.dsc Machine Architecture: arm64 Package: libbpp-phyl Package-Time: 1452 Source-Version: 2.4.1-7ubuntu1 Space: 1089888 Status: successful Version: 2.4.1-7ubuntu1 -------------------------------------------------------------------------------- Finished at 2022-07-19T18:20:50Z Build needed 00:24:12, 1089888k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24184316 Scanning for processes to kill in build PACKAGEBUILD-24184316