https://launchpad.net/ubuntu/+source/libbpp-seq-omics/2.4.0-2/+build/14739634 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-019 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:08:24 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_160 python-lpbuildd_160 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Apr 02:38:27 ntpdate[1823]: adjust time server 10.211.37.1 offset 0.003080 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14739634 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-14739634 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14739634 Starting target for build PACKAGEBUILD-14739634 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14739634 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14739634 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14739634 Updating target for build PACKAGEBUILD-14739634 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1017 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8566 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4943 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [21.8 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [8968 B] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [61.2 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [39.7 kB] Fetched 15.8 MB in 8s (1929 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: dirmngr gcc-8-base gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libargon2-0 libcom-err2 libcryptsetup12 libext2fs2 libgdbm-compat4 libgdbm5 libisl19 libjson-c3 libmpfr6 libnghttp2-14 libssl1.1 libunistring2 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential coreutils cpp cpp-7 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gnupg gnupg-agent gpgv hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan4 libasn1-8-heimdal libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libmpc3 libmpx2 libncurses5 libncursesw5 libnettle6 libnpth0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.26 libpng16-16 libprocps6 libpsl5 libquadmath0 libreadline7 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base mawk mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux 159 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 73.0 MB of archives. After this operation, 16.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-modules-5.26 all 5.26.1-5 [2761 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 libgdbm5 amd64 1.14.1-6 [26.0 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 libgdbm-compat4 amd64 1.14.1-6 [6084 B] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 libperl5.26 amd64 5.26.1-5 [3544 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 perl amd64 5.26.1-5 [202 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-base amd64 5.26.1-5 [1390 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.27-0ubuntu3 [2590 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.27-0ubuntu3 [71.8 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 linux-libc-dev amd64 4.15.0-15.16 [1008 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.27-0ubuntu3 [2823 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.27-0ubuntu3 [640 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-8-base amd64 8-20180406-0ubuntu1 [18.0 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc1 amd64 1:8-20180406-0ubuntu1 [40.9 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 init-system-helpers all 1.51 [37.3 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 debianutils amd64 4.8.4 [85.7 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 bash amd64 4.4.18-2ubuntu1 [614 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdutils amd64 1:2.31.1-0.4ubuntu3 [60.2 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.28-1ubuntu1 [1231 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg amd64 1.19.0.5ubuntu1 [1140 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 dash amd64 0.5.8-2.10 [88.5 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libcom-err2 amd64 1.44.1-1 [9860 B] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 libcomerr2 amd64 1.44.1-1 [2696 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libext2fs2 amd64 1.44.1-1 [158 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fslibs amd64 1.44.1-1 [2700 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fsprogs amd64 1.44.1-1 [390 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 findutils amd64 4.6.0+git+20170828-2 [291 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 hostname amd64 3.20 [11.3 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 login amd64 1:4.5-1ubuntu1 [307 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 libncurses5 amd64 6.1-1ubuntu1 [95.2 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libtinfo5 amd64 6.1-1ubuntu1 [80.7 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 ncurses-bin amd64 6.1-1ubuntu1 [163 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libncursesw5 amd64 6.1-1ubuntu1 [117 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 sed amd64 4.4-2 [182 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 libuuid1 amd64 2.31.1-0.4ubuntu3 [19.9 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libblkid1 amd64 2.31.1-0.4ubuntu3 [124 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 libsmartcols1 amd64 2.31.1-0.4ubuntu3 [83.6 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 libfdisk1 amd64 2.31.1-0.4ubuntu3 [164 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3 amd64 2:8.39-9 [229 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 libselinux1 amd64 2.7-2build2 [68.2 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 libmount1 amd64 2.31.1-0.4ubuntu3 [136 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 fdisk amd64 2.31.1-0.4ubuntu3 [108 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 util-linux amd64 2.31.1-0.4ubuntu3 [902 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 ncurses-base all 6.1-1ubuntu1 [17.3 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 liblz4-1 amd64 0.0~r131-2ubuntu3 [48.1 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++6 amd64 8-20180406-0ubuntu1 [400 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 libudev1 amd64 237-3ubuntu7 [53.7 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 libapt-pkg5.0 amd64 1.6~beta1 [799 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libaudit-common all 1:2.8.2-1ubuntu1 [4132 B] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap-ng0 amd64 0.7.7-3.1 [11.1 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 libaudit1 amd64 1:2.8.2-1ubuntu1 [38.9 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 debconf all 1.5.66 [124 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam0g amd64 1.1.8-3.6ubuntu2 [55.1 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common all 2.7-2build2 [6904 B] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage1 amd64 2.7-2build2 [84.6 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam-modules-bin amd64 1.1.8-3.6ubuntu2 [36.7 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam-modules amd64 1.1.8-3.6ubuntu2 [242 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 passwd amd64 1:4.5-1ubuntu1 [816 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 adduser all 3.116ubuntu1 [163 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 libgpg-error0 amd64 1.27-6 [38.0 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcrypt20 amd64 1.8.1-4ubuntu1 [418 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.2.4-1ubuntu1 [196 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 ubuntu-keyring all 2018.02.28 [20.7 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 libunistring2 amd64 0.9.9-0ubuntu1 [369 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-2 [240 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 libnettle6 amd64 3.4-1 [109 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main amd64 libhogweed4 amd64 3.4-1 [137 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn2-0 amd64 2.0.4-1.1build2 [48.2 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main amd64 libffi6 amd64 3.2.1-8 [17.9 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main amd64 libp11-kit0 amd64 0.23.9-2 [187 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main amd64 libtasn1-6 amd64 4.13-2 [36.2 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main amd64 libgnutls30 amd64 3.5.18-1ubuntu1 [644 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu4 [37.6 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main amd64 apt amd64 1.6~beta1 [1153 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main amd64 libargon2-0 amd64 0~20161029-1.1 [19.9 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 libjson-c3 amd64 0.12.1-1.3 [21.4 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main amd64 libdevmapper1.02.1 amd64 2:1.02.145-4.1ubuntu2 [127 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 libcryptsetup12 amd64 2:2.0.2-1ubuntu1 [134 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 libapparmor1 amd64 2.12-4ubuntu4 [32.0 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.2 [13.0 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn11 amd64 1.33-2.1ubuntu1 [45.7 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 libip4tc0 amd64 1.6.1-2ubuntu2 [19.6 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main amd64 libkmod2 amd64 24-1ubuntu3 [40.1 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main amd64 mount amd64 2.31.1-0.4ubuntu3 [107 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 libprocps6 amd64 2:3.3.12-3ubuntu1 [31.4 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main amd64 lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main amd64 procps amd64 2:3.3.12-3ubuntu1 [225 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd amd64 237-3ubuntu7 [2892 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main amd64 libsystemd0 amd64 237-3ubuntu7 [204 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main amd64 mawk amd64 1.3.3-17ubuntu3 [81.5 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main amd64 init amd64 1.51 [5864 B] Get:94 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd-sysv amd64 237-3ubuntu7 [11.7 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam-runtime all 1.1.8-3.6ubuntu2 [37.0 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main amd64 libss2 amd64 1.44.1-1 [11.1 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main amd64 sensible-utils all 0.0.12 [14.8 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main amd64 dmsetup amd64 2:1.02.145-4.1ubuntu2 [74.3 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main amd64 readline-common all 7.0-3 [52.9 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main amd64 libreadline7 amd64 7.0-3 [124 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main amd64 libslang2 amd64 2.3.1a-3ubuntu1 [424 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main amd64 libsqlite3-0 amd64 3.22.0-1 [496 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main amd64 libssl1.1 amd64 1.1.0g-2ubuntu3 [1128 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main amd64 openssl amd64 1.1.0g-2ubuntu3 [532 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main amd64 tzdata all 2018d-1 [188 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main amd64 libgssapi-krb5-2 amd64 1.16-2build1 [122 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5-3 amd64 1.16-2build1 [279 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main amd64 libk5crypto3 amd64 1.16-2build1 [85.6 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5support0 amd64 1.16-2build1 [31.1 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu1 [9308 B] Get:111 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main amd64 libpsl5 amd64 0.19.1-5build1 [41.8 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main amd64 libssl1.0.0 amd64 1.0.2n-1ubuntu5 [1087 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main amd64 multiarch-support amd64 2.27-0ubuntu3 [6920 B] Get:115 http://ftpmaster.internal/ubuntu bionic/main amd64 advancecomp amd64 2.1-1 [200 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/universe amd64 apt-transport-https all 1.6~beta1 [1692 B] Get:117 http://ftpmaster.internal/ubuntu bionic/main amd64 libbinutils amd64 2.30-14ubuntu2 [502 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils amd64 2.30-14ubuntu2 [3388 B] Get:119 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-common amd64 2.30-14ubuntu2 [193 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-x86-64-linux-gnu amd64 2.30-14ubuntu2 [1856 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main amd64 libquadmath0 amd64 8-20180406-0ubuntu1 [134 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main amd64 libitm1 amd64 8-20180406-0ubuntu1 [28.1 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpx2 amd64 8-20180406-0ubuntu1 [11.7 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main amd64 libgomp1 amd64 8-20180406-0ubuntu1 [76.7 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main amd64 libatomic1 amd64 8-20180406-0ubuntu1 [9068 B] Get:126 http://ftpmaster.internal/ubuntu bionic/main amd64 libasan4 amd64 7.3.0-15ubuntu2 [358 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main amd64 liblsan0 amd64 8-20180406-0ubuntu1 [133 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main amd64 libtsan0 amd64 8-20180406-0ubuntu1 [289 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main amd64 libubsan0 amd64 7.3.0-15ubuntu2 [126 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main amd64 libcilkrts5 amd64 7.3.0-15ubuntu2 [42.5 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main amd64 g++-7 amd64 7.3.0-15ubuntu2 [7562 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7 amd64 7.3.0-15ubuntu2 [7441 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++-7-dev amd64 7.3.0-15ubuntu2 [1442 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc-7-dev amd64 7.3.0-15ubuntu2 [2379 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main amd64 libcc1-0 amd64 8-20180406-0ubuntu1 [39.5 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main amd64 cpp-7 amd64 7.3.0-15ubuntu2 [6734 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7-base amd64 7.3.0-15ubuntu2 [18.9 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main amd64 libisl19 amd64 0.19-1 [551 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpc3 amd64 1.1.0-1 [40.8 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpfr6 amd64 4.0.1-1 [243 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main amd64 cpp amd64 4:7.3.0-3ubuntu2 [27.5 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc amd64 4:7.3.0-3ubuntu2 [5192 B] Get:143 http://ftpmaster.internal/ubuntu bionic/main amd64 g++ amd64 4:7.3.0-3ubuntu2 [1576 B] Get:144 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg-dev all 1.19.0.5ubuntu1 [607 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main amd64 libdpkg-perl all 1.19.0.5ubuntu1 [211 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/main amd64 patch amd64 2.7.6-1 [101 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] Get:148 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-l10n all 2.2.4-1ubuntu1 [48.6 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/main amd64 libassuan0 amd64 2.5.1-2 [35.0 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg amd64 2.2.4-1ubuntu1 [249 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/universe amd64 gnupg-agent all 2.2.4-1ubuntu1 [4544 B] Get:152 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgconf amd64 2.2.4-1ubuntu1 [122 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/main amd64 pinentry-curses amd64 1.1.0-1 [35.8 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/main amd64 libnpth0 amd64 1.5-3 [7668 B] Get:155 http://ftpmaster.internal/ubuntu bionic/main amd64 gpg-agent amd64 2.2.4-1ubuntu1 [227 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-utils amd64 2.2.4-1ubuntu1 [126 kB] Get:157 http://ftpmaster.internal/ubuntu bionic/main amd64 gpg amd64 2.2.4-1ubuntu1 [467 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/main amd64 gpg-wks-client amd64 2.2.4-1ubuntu1 [91.7 kB] Get:159 http://ftpmaster.internal/ubuntu bionic/main amd64 gpg-wks-server amd64 2.2.4-1ubuntu1 [84.9 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgsm amd64 2.2.4-1ubuntu1 [215 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main amd64 dirmngr amd64 2.2.4-1ubuntu1 [316 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main amd64 libfakeroot amd64 1.22-2ubuntu1 [25.9 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main amd64 fakeroot amd64 1.22-2ubuntu1 [62.3 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-1 [41.3 kB] Get:165 http://ftpmaster.internal/ubuntu bionic/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-1 [175 kB] Get:166 http://ftpmaster.internal/ubuntu bionic/main amd64 libnghttp2-14 amd64 1.30.0-1 [77.7 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl3-gnutls amd64 7.58.0-2ubuntu3 [212 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-1 [29.3 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-1 [85.9 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-1 [47.8 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-1 [107 kB] Get:172 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-1 [206 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-1 [14.8 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-1 [96.5 kB] Get:175 http://ftpmaster.internal/ubuntu bionic/universe amd64 libisl15 amd64 0.18-4 [548 kB] Get:176 http://ftpmaster.internal/ubuntu bionic/main amd64 liblockfile-bin amd64 1.14-1.1 [11.9 kB] Get:177 http://ftpmaster.internal/ubuntu bionic/main amd64 liblockfile1 amd64 1.14-1.1 [6804 B] Get:178 http://ftpmaster.internal/ubuntu bionic/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:179 http://ftpmaster.internal/ubuntu bionic/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:180 http://ftpmaster.internal/ubuntu bionic/main amd64 optipng amd64 0.7.6-1.1 [83.4 kB] Get:181 http://ftpmaster.internal/ubuntu bionic/main amd64 pkgbinarymangler all 135 [51.3 kB] debconf: 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14739634 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-14739634 --arch=amd64 --dist=bionic-proposed --nolog -A libbpp-seq-omics_2.4.0-2.dsc Initiating build PACKAGEBUILD-14739634 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:08:24 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-019.buildd +==============================================================================+ | libbpp-seq-omics 2.4.0-2 (amd64) 09 Apr 2018 02:40 | +==============================================================================+ Package: libbpp-seq-omics Version: 2.4.0-2 Source Version: 2.4.0-2 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-87usAz/libbpp-seq-omics-2.4.0' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-87usAz' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14739634/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq-omics_2.4.0-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-tcdq2g/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-tcdq2g/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tcdq2g/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-tcdq2g/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tcdq2g/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-tcdq2g/apt_archive ./ Packages [523 B] Fetched 2856 B in 0s (34.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-tcdq2g/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (38.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12996 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.0) Filtered Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.0) dpkg-deb: building package 'sbuild-build-depends-libbpp-seq-omics-dummy' in '/<>/resolver-Hy_Gwm/apt_archive/sbuild-build-depends-libbpp-seq-omics-dummy.deb'. Ign:1 copy:/<>/resolver-Hy_Gwm/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Hy_Gwm/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Hy_Gwm/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Hy_Gwm/apt_archive ./ Sources [247 B] Get:5 copy:/<>/resolver-Hy_Gwm/apt_archive ./ Packages [567 B] Fetched 2933 B in 0s (53.1 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbpp-seq-omics build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libisl15 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbsd0 libcroco3 libcurl4 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libjsoncpp1 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbsd0 libcroco3 libcurl4 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libjsoncpp1 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-libbpp-seq-omics-dummy 0 upgraded, 44 newly installed, 1 to remove and 0 not upgraded. Need to get 24.7 MB of archives. After this operation, 111 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Hy_Gwm/apt_archive ./ sbuild-build-depends-libbpp-seq-omics-dummy 0.invalid.0 [892 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 libbsd0 amd64 0.8.7-1 [41.5 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdmainutils amd64 11.1.2ubuntu1 [181 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 groff-base amd64 1.22.3-10 [1153 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 man-db amd64 2.8.3-2 [1019 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic-mgc amd64 1:5.32-2 [184 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic1 amd64 1:5.32-2 [68.5 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 file amd64 1:5.32-2 [22.1 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 libexpat1 amd64 2.2.5-3 [80.2 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libglib2.0-0 amd64 2.56.0-4ubuntu1 [1166 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu60 amd64 60.2-3ubuntu3 [8054 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1ubuntu1 [662 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext-base amd64 0.19.8.1-6 [50.0 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libsigsegv2 amd64 2.12-1 [14.7 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 autoconf all 2.69-11 [322 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-6 [412 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 cmake-data all 3.10.2-1ubuntu1 [1331 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive13 amd64 3.2.2-3.1 [289 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl4 amd64 7.58.0-2ubuntu3 [214 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 librhash0 amd64 1.3.6-2 [78.1 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 libuv1 amd64 1.18.0-3 [64.4 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 cmake amd64 3.10.2-1ubuntu1 [3138 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/universe amd64 d-shlibs all 0.82 [9880 B] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 17 [15.8 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-6 [895 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 debhelper all 11.1.6ubuntu1 [902 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libbpp-core4 amd64 2.4.0-3 [605 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libbpp-core-dev amd64 2.4.0-3 [912 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libbpp-seq12 amd64 2.4.0-2 [512 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libbpp-seq-dev amd64 2.4.0-2 [718 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.7 MB in 1s (17.8 MB/s) (Reading database ... 12996 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libbsd0:amd64. (Reading database ... 12987 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu1_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../05-liblzo2-2_2.08-1.2_amd64.deb ... 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Setting up libbpp-core4:amd64 (2.4.0-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:amd64 (1:5.32-2) ... Setting up librhash0:amd64 (1.3.6-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Processing triggers for libc-bin (2.27-0ubuntu3) ... Setting up autotools-dev (20180224.1) ... Setting up libbpp-seq12:amd64 (2.4.0-2) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up gettext (0.19.8.1-6) ... Setting up libarchive13:amd64 (3.2.2-3.1) ... Setting up libbpp-core-dev (2.4.0-3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.10.2-1ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up libbpp-seq-dev (2.4.0-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.1.6ubuntu1) ... Setting up sbuild-build-depends-libbpp-seq-omics-dummy (0.invalid.0) ... (Reading database ... 17619 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.27-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-119-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-14ubuntu2 dpkg-dev_1.19.0.5ubuntu1 g++-7_7.3.0-15ubuntu2 gcc-7_7.3.0-15ubuntu2 libc6-dev_2.27-0ubuntu3 libstdc++-7-dev_7.3.0-15ubuntu2 libstdc++6_8-20180406-0ubuntu1 linux-libc-dev_4.15.0-15.16 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6~beta1 apt-transport-https_1.6~beta1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-14ubuntu2 binutils-common_2.30-14ubuntu2 binutils-x86-64-linux-gnu_2.30-14ubuntu2 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.10.2-1ubuntu1 cmake-data_3.10.2-1ubuntu1 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu2 cpp-7_7.3.0-15ubuntu2 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.1.6ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dirmngr_2.2.4-1ubuntu1 dmsetup_2:1.02.145-4.1ubuntu2 dpkg_1.19.0.5ubuntu1 dpkg-dev_1.19.0.5ubuntu1 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu3 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu2 g++-7_7.3.0-15ubuntu2 gcc_4:7.3.0-3ubuntu2 gcc-7_7.3.0-15ubuntu2 gcc-7-base_7.3.0-15ubuntu2 gcc-8-base_8-20180406-0ubuntu1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.4-1ubuntu1 gnupg-agent_2.2.4-1ubuntu1 gnupg-l10n_2.2.4-1ubuntu1 gnupg-utils_2.2.4-1ubuntu1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpg-wks-client_2.2.4-1ubuntu1 gpg-wks-server_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgsm_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu4 libapt-pkg5.0_1.6~beta1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-15ubuntu2 libasn1-8-heimdal_7.5.0+dfsg-1 libassuan0_2.5.1-2 libatomic1_8-20180406-0ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-14ubuntu2 libblkid1_2.31.1-0.4ubuntu3 libbpp-core-dev_2.4.0-3 libbpp-core4_2.4.0-3 libbpp-seq-dev_2.4.0-2 libbpp-seq12_2.4.0-2 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-0ubuntu3 libc-dev-bin_2.27-0ubuntu3 libc6_2.27-0ubuntu3 libc6-dev_2.27-0ubuntu3 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8-20180406-0ubuntu1 libcilkrts5_7.3.0-15ubuntu2 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3-gnutls_7.58.0-2ubuntu3 libcurl4_7.58.0-2ubuntu3 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu2 libdpkg-perl_1.19.0.5ubuntu1 libexpat1_2.2.5-3 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-15ubuntu2 libgcc1_1:8-20180406-0ubuntu1 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.0-4ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8-20180406-0ubuntu1 libgpg-error0_1.27-6 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180406-0ubuntu1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8-20180406-0ubuntu1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu3 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180406-0ubuntu1 libncurses5_6.1-1ubuntu1 libncursesw5_6.1-1ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.30.0-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-5 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libpsl5_0.19.1-5build1 libquadmath0_8-20180406-0ubuntu1 libreadline7_7.0-3 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu3 libstdc++-7-dev_7.3.0-15ubuntu2 libstdc++6_8-20180406-0ubuntu1 libsystemd0_237-3ubuntu7 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1 libtool_2.4.6-2 libtsan0_8-20180406-0ubuntu1 libubsan0_7.3.0-15ubuntu2 libudev1_237-3ubuntu7 libunistring0_0.9.3-5.2ubuntu1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu3 libuv1_1.18.0-3 libwind0-heimdal_7.5.0+dfsg-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 linux-libc-dev_4.15.0-15.16 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu3 multiarch-support_2.27-0ubuntu3 ncurses-base_6.1-1ubuntu1 ncurses-bin_6.1-1ubuntu1 openssl_1.1.0g-2ubuntu3 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-1 perl_5.26.1-5 perl-base_5.26.1-5 perl-modules-5.26_5.26.1-5 pinentry-curses_1.1.0-1 pkgbinarymangler_135 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-seq-omics-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu7 systemd-sysv_237-3ubuntu7 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Apr 8 16:30:29 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.4.0-2.dsc dpkg-source: info: extracting libbpp-seq-omics in libbpp-seq-omics-2.4.0 dpkg-source: info: unpacking libbpp-seq-omics_2.4.0.orig.tar.gz dpkg-source: info: unpacking libbpp-seq-omics_2.4.0-2.debian.tar.xz dpkg-source: info: applying unforce-cxxflags.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14739634 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14739634 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14739634 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbpp-seq-omics dpkg-buildpackage: info: source version 2.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build libbpp-seq-omics-2.4.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -- The CXX compiler identification is GNU 7.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.0.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j4 -O make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' 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19%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 59%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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/usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c 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-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Linking CXX shared library libbpp-seq-omics.so cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.3 -o libbpp-seq-omics.so.3.0.0 CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o 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CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.0.0 cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.3.0.0 libbpp-seq-omics.so.3 libbpp-seq-omics.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target bpp-seq-omics-shared make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color= Scanning dependencies of target test_gff make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /<>/test/test_gff.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory 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/usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= Scanning dependencies of target test_fastq make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp make[3]: Leaving directory 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp make[3]: Leaving directory 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CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/bin/ranlib libbpp-seq-omics.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bpp-seq-omics-static make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E 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src/CMakeFiles/bpp-seq-omics-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build make[3]: Nothing to be done for 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-- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-seq-omics3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3 debian/libbpp-seq-omics3/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 debian/libbpp-seq-omics3/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-seq-omics-dev PKGSHL=libbpp-seq-omics3 install -d -m 755 debian/libbpp-seq-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip debian/rules override_dh_makeshlibs make[1]: Entering directory '/<>' echo "Architecture amd64 is the only one where a symbols file is provided" Architecture amd64 is the only one where a symbols file is provided dh_makeshlibs echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/<>' dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libbpp-seq-omics-dev: unused substitution variable ${devlibs:Depends} dh_md5sums dh_builddeb INFO: pkgstriptranslations version 135 INFO: pkgstriptranslations version 135 INFO: pkgstriptranslations version 135 pkgstriptranslations: processing libbpp-seq-omics3 (in debian/libbpp-seq-omics3); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-omics-dev (in debian/libbpp-seq-omics-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-omics3-dbgsym (in debian/.debhelper/libbpp-seq-omics3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq-omics3/DEBIAN/control, package libbpp-seq-omics3, directory debian/libbpp-seq-omics3 INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... pkgstripfiles: processing control file: debian/libbpp-seq-omics-dev/DEBIAN/control, package libbpp-seq-omics-dev, directory debian/libbpp-seq-omics-dev Searching for duplicated docs in dependency libbpp-seq-omics3... symlinking changelog.Debian.gz in libbpp-seq-omics-dev to file in libbpp-seq-omics3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-omics-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.4.0-2_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/libbpp-seq-omics3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-omics3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-omics3' in '../libbpp-seq-omics3_2.4.0-2_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libbpp-seq-omics3/dbgsym-root/DEBIAN/control, package libbpp-seq-omics3-dbgsym, directory debian/.debhelper/libbpp-seq-omics3/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-omics3-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-omics3-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-seq-omics3/libbpp-seq-omics3-dbgsym_2.4.0-2_amd64.deb'. Renaming libbpp-seq-omics3-dbgsym_2.4.0-2_amd64.deb to libbpp-seq-omics3-dbgsym_2.4.0-2_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../libbpp-seq-omics_2.4.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build libbpp-seq-omics-2.4.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180409-0244 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-seq-omics_2.4.0-2_amd64.changes: --------------------------------------- Format: 1.8 Date: Sun, 08 Apr 2018 18:29:27 +0200 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3 Architecture: amd64 Version: 2.4.0-2 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Julien Dutheil Description: libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files) libbpp-seq-omics3 - Bio++ Sequence library: genomics components Closes: 895212 Changes: libbpp-seq-omics (2.4.0-2) unstable; urgency=medium . [ Julien Dutheil ] * Provide symbols file only for amd64 Closes: #895212 * Versioned Build-Depends: d-shlibs (>= 0.82) . [ Andreas Tille ] * Provide full license text of CeCILL license * Point Vcs fields to salsa.debian.org Checksums-Sha1: 6af2254cf5a3b2fc6c5cb2f334ac5cd44dacd3d0 363352 libbpp-seq-omics-dev_2.4.0-2_amd64.deb c15bc9e777265caf9ad53335c3eb39e7a37d5094 6756092 libbpp-seq-omics3-dbgsym_2.4.0-2_amd64.ddeb 53476dc9d5137fc7d12e03dcae0a6fff8fc62494 217588 libbpp-seq-omics3_2.4.0-2_amd64.deb c2a621979e9f3bf1c19f63a5daf452281ecf07b8 7259 libbpp-seq-omics_2.4.0-2_amd64.buildinfo Checksums-Sha256: 88c52c67e976b99f55c356d75bb703994f81ecc3f5add7a93fdf402f9b05083d 363352 libbpp-seq-omics-dev_2.4.0-2_amd64.deb 39d7b1caa63ac5bab7628408b72cd7f801a987e5eaa5258d9d3e23e2869f440e 6756092 libbpp-seq-omics3-dbgsym_2.4.0-2_amd64.ddeb cbadce133f47c15fd0a91d25c1096c3616dd20433db48850d7a87c9c5cedc1db 217588 libbpp-seq-omics3_2.4.0-2_amd64.deb e89d4db626aa7edf23d0494c0c3ff3e60a3491889843b62415829cb1acde4dd4 7259 libbpp-seq-omics_2.4.0-2_amd64.buildinfo Files: 27b9f3a188d733246f5b506fb2a47d5c 363352 libdevel optional libbpp-seq-omics-dev_2.4.0-2_amd64.deb 47e30ed275385cba89d87114befc39da 6756092 debug optional libbpp-seq-omics3-dbgsym_2.4.0-2_amd64.ddeb 73e725f52eda9d108a2e604c44e5f6bb 217588 libs optional libbpp-seq-omics3_2.4.0-2_amd64.deb c694683f14b000595a57bd54cf00ff00 7259 science optional libbpp-seq-omics_2.4.0-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-seq-omics-dev_2.4.0-2_amd64.deb -------------------------------------- new debian package, version 2.0. size 363352 bytes: control archive=2232 bytes. 991 bytes, 20 lines control 4180 bytes, 48 lines md5sums Package: libbpp-seq-omics-dev Source: libbpp-seq-omics Version: 2.4.0-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3918 Depends: libbpp-seq-omics3 (= 2.4.0-2), libbpp-seq-dev (>= 2.4.0) Section: libdevel Priority: optional Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library: genomics components (development files) Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes dedicated to genomic sequencing. drwxr-xr-x root/root 0 2018-04-08 16:29 ./ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/Seq/Feature/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/Seq/Feature/Bed/ -rw-r--r-- root/root 4694 2018-03-12 09:43 ./usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -rw-r--r-- root/root 2497 2018-03-12 09:43 ./usr/include/Bpp/Seq/Feature/FeatureReader.h drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/Seq/Feature/Gff/ -rw-r--r-- root/root 4782 2018-03-12 09:43 ./usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/Seq/Feature/Gtf/ -rw-r--r-- root/root 3639 2018-03-12 09:43 ./usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -rw-r--r-- root/root 20572 2018-03-12 09:43 ./usr/include/Bpp/Seq/Feature/SequenceFeature.h -rw-r--r-- root/root 3441 2018-03-12 09:43 ./usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/Seq/Io/ -rw-r--r-- root/root 4066 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Fastq.h drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/include/Bpp/Seq/Io/Maf/ -rw-r--r-- root/root 9903 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -rw-r--r-- root/root 2884 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -rw-r--r-- root/root 4640 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -rw-r--r-- root/root 2878 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -rw-r--r-- root/root 2916 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -rw-r--r-- root/root 3396 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -rw-r--r-- root/root 4524 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -rw-r--r-- root/root 3918 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -rw-r--r-- root/root 3060 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -rw-r--r-- root/root 3608 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -rw-r--r-- root/root 3781 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -rw-r--r-- root/root 3307 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -rw-r--r-- root/root 2724 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -rw-r--r-- root/root 4455 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/IterationListener.h -rw-r--r-- root/root 8676 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/MafBlock.h -rw-r--r-- root/root 6822 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/MafIterator.h -rw-r--r-- root/root 4248 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/MafParser.h -rw-r--r-- root/root 8008 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/MafSequence.h -rw-r--r-- root/root 22454 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -rw-r--r-- root/root 3223 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -rw-r--r-- root/root 4276 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -rw-r--r-- root/root 5518 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -rw-r--r-- root/root 3696 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -rw-r--r-- root/root 7473 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -rw-r--r-- root/root 3042 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -rw-r--r-- root/root 5728 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -rw-r--r-- root/root 3211 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -rw-r--r-- root/root 2999 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -rw-r--r-- root/root 4025 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -rw-r--r-- root/root 4120 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -rw-r--r-- root/root 3928 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -rw-r--r-- root/root 3136 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -rw-r--r-- root/root 3946 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -rw-r--r-- root/root 4026 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -rw-r--r-- root/root 2900 2018-03-12 09:43 ./usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/cmake/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/ -rw-r--r-- root/root 1607 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake -rw-r--r-- root/root 2323 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake -rw-r--r-- root/root 1575 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake -rw-r--r-- root/root 3988 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -rw-r--r-- root/root 3721652 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a lrwxrwxrwx root/root 0 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so -> libbpp-seq-omics.so.3 drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/share/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/share/doc/libbpp-seq-omics-dev/ lrwxrwxrwx root/root 0 2018-04-08 16:29 ./usr/share/doc/libbpp-seq-omics-dev/changelog.Debian.gz -> ../libbpp-seq-omics3/changelog.Debian.gz -rw-r--r-- root/root 23176 2018-04-08 16:29 ./usr/share/doc/libbpp-seq-omics-dev/copyright libbpp-seq-omics3_2.4.0-2_amd64.deb ----------------------------------- new debian package, version 2.0. size 217588 bytes: control archive=7784 bytes. 1010 bytes, 21 lines control 247 bytes, 3 lines md5sums 37 bytes, 1 lines shlibs 77136 bytes, 1168 lines symbols 74 bytes, 2 lines triggers Package: libbpp-seq-omics3 Source: libbpp-seq-omics Version: 2.4.0-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 850 Depends: libbpp-core4 (>= 2.4.0), libbpp-seq12 (>= 2.4.0), libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library: genomics components Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the dynamic library of the Bio++ classes dedicated to genomic sequencing. drwxr-xr-x root/root 0 2018-04-08 16:29 ./ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3 -> libbpp-seq-omics.so.3.0.0 -rw-r--r-- root/root 755752 2018-04-08 16:29 ./usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/share/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-08 16:29 ./usr/share/doc/libbpp-seq-omics3/ -rw-r--r-- root/root 995 2018-04-08 16:29 ./usr/share/doc/libbpp-seq-omics3/changelog.Debian.gz -rw-r--r-- root/root 23176 2018-04-08 16:29 ./usr/share/doc/libbpp-seq-omics3/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 231724 Build-Time: 208 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 21 Job: libbpp-seq-omics_2.4.0-2.dsc Machine Architecture: amd64 Package: libbpp-seq-omics Package-Time: 231 Source-Version: 2.4.0-2 Space: 231724 Status: successful Version: 2.4.0-2 -------------------------------------------------------------------------------- Finished at 20180409-0244 Build needed 00:03:51, 231724k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14739634 Scanning for processes to kill in build PACKAGEBUILD-14739634 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14739634 Stopping target for build PACKAGEBUILD-14739634 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14739634 Removing build PACKAGEBUILD-14739634