https://launchpad.net/ubuntu/+source/libbpp-seq-omics/2.4.1-7/+build/22297295 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-062 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 19 Oct 00:14:22 ntpdate[1685]: adjust time server 10.211.37.1 offset 0.000672 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22297295 --image-type chroot /home/buildd/filecache-default/679b34c61ac674bf7a7b60a9cca5f3e60877d1fc Creating target for build PACKAGEBUILD-22297295 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22297295 Starting target for build PACKAGEBUILD-22297295 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22297295 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22297295 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22297295 Updating target for build PACKAGEBUILD-22297295 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1350 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5463 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [202 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [83.3 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [382 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [199 kB] Fetched 21.3 MB in 10s (2179 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd bsdutils bzip2 ca-certificates coreutils debianutils fakeroot gzip libapparmor1 libapt-pkg6.0 libargon2-1 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libcap-ng0 libcap2 libcrypt-dev libcrypt1 libdb5.3 libdebconfclient0 libfakeroot libgdbm-compat4 libgdbm6 libgmp10 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre3 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libtasn1-6 libtinfo6 libuuid1 libzstd1 lockfile-progs make mawk mount ncurses-base ncurses-bin optipng patch pinentry-curses readline-common sed sensible-utils sysvinit-utils tar util-linux xz-utils 77 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 25.6 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt-dev armhf 1:4.4.18-4ubuntu2 [122 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt1 armhf 1:4.4.18-4ubuntu2 [94.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf base-files armhf 12ubuntu1 [63.0 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf bsdutils armhf 1:2.36.1-8ubuntu2 [86.0 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf coreutils armhf 8.32-4ubuntu3 [1302 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf debianutils armhf 5.5-1 [76.9 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf gzip armhf 1.10-4ubuntu2 [94.9 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncurses6 armhf 6.2+20210905-1 [87.4 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncursesw6 armhf 6.2+20210905-1 [118 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtinfo6 armhf 6.2+20210905-1 [88.3 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ncurses-bin armhf 6.2+20210905-1 [172 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf sed armhf 4.7-1ubuntu2 [185 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf tar armhf 1.34+dfsg-1build2 [272 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf util-linux armhf 2.36.1-8ubuntu2 [1071 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf libdebconfclient0 armhf 0.256ubuntu4 [5802 B] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf base-passwd armhf 3.5.52 [49.1 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ncurses-base all 6.2+20210905-1 [19.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf sysvinit-utils armhf 2.96-7ubuntu2 [20.1 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf bzip2 armhf 1.0.8-4ubuntu4 [34.1 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-1.0 armhf 1.0.8-4ubuntu4 [31.4 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf liblz4-1 armhf 1.9.3-2build1 [54.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma5 armhf 5.2.5-2build1 [87.3 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libzstd1 armhf 1.4.8+dfsg-3 [285 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libapt-pkg6.0 armhf 2.3.10 [897 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libseccomp2 armhf 2.5.1-1ubuntu2 [47.5 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf apt armhf 2.3.10 [1380 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf mount armhf 2.36.1-8ubuntu2 [122 kB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libattr1 armhf 1:2.5.1-1 [12.2 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit-common all 1:3.0-2ubuntu3 [4688 B] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf libcap-ng0 armhf 0.7.9-2.2build2 [10.1 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit1 armhf 1:3.0-2ubuntu3 [43.1 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libblkid1 armhf 2.36.1-8ubuntu2 [131 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf libcap2 armhf 1:2.44-1build2 [15.3 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.8ubuntu2 [648 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf libgmp10 armhf 2:6.2.1+dfsg-1ubuntu3 [207 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgpg-error0 armhf 1.42-3 [60.1 kB] Get:37 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libk5crypto3 armhf 1.18.3-7 [83.1 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5support0 armhf 1.18.3-7 [30.3 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5-3 armhf 1.18.3-7 [330 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgssapi-krb5-2 armhf 1.18.3-7 [120 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libkeyutils1 armhf 1.6.1-2ubuntu2 [8936 B] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libselinux1 armhf 3.1-3build3 [66.4 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmount1 armhf 2.36.1-8ubuntu2 [146 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre3 armhf 2:8.39-13build4 [225 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage-common all 3.1-1ubuntu3 [9606 B] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage1 armhf 3.1-1ubuntu3 [83.9 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsmartcols1 armhf 2.36.1-8ubuntu2 [90.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libuuid1 armhf 2.36.1-8ubuntu2 [22.7 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libnettle8 armhf 3.7.3-1build1 [173 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libhogweed6 armhf 3.7.3-1build1 [187 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libidn2-0 armhf 2.3.2-2 [67.8 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libp11-kit0 armhf 0.24.0-5 [218 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtasn1-6 armhf 4.17.0-2 [36.6 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf mawk armhf 1.3.4.20200120-2build1 [91.4 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf sensible-utils all 0.0.17 [20.1 kB] Get:56 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ca-certificates all 20211016 [148 kB] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libapparmor1 armhf 3.0.3-0ubuntu2 [32.2 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf libargon2-1 armhf 0~20171227-0.2build22 [20.9 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu3 [17.6 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libjson-c5 armhf 0.15-2build3 [28.9 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf readline-common all 8.1-2build1 [53.6 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline8 armhf 8.1-2build1 [128 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsqlite3-0 armhf 3.36.0-2 [571 kB] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgdbm6 armhf 1.21-1 [30.9 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf xz-utils armhf 5.2.5-2build1 [84.4 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main armhf libfakeroot armhf 1.25.3-1.1ubuntu3 [26.2 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main armhf fakeroot armhf 1.25.3-1.1ubuntu3 [62.2 kB] Get:68 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgdbm-compat4 armhf 1.21-1 [6120 B] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libisl23 armhf 0.24-2 [581 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf libmpfr6 armhf 4.1.0-3build2 [217 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libnpth0 armhf 1.6-3build1 [7254 B] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf lockfile-progs armhf 0.1.19 [9508 B] Get:73 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf make armhf 4.3-4ubuntu2 [162 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf optipng armhf 0.7.7-2 [84.7 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf patch armhf 2.7.6-7build1 [111 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf pinentry-curses armhf 1.1.1-1build1 [35.6 kB] Get:77 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmpc3 armhf 1.2.1-1 [39.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 1s (16.5 MB/s) (Reading database ... 12985 files and directories 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Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libmpfr6:armhf (4.1.0-3build2) ... Setting up optipng (0.7.7-2) ... Setting up libncurses6:armhf (6.2+20210905-1) ... Setting up xz-utils (5.2.5-2build1) ... Setting up libmpc3:armhf (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up patch (2.7.6-7build1) ... Setting up libncursesw6:armhf (6.2+20210905-1) ... Setting up mount (2.36.1-8ubuntu2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:armhf (1:4.4.18-4ubuntu2) ... Setting up mawk (1.3.4.20200120-2build1) ... Setting up libisl23:armhf (0.24-2) ... Setting up libjson-c5:armhf (0.15-2build3) ... Setting up readline-common (8.1-2build1) ... Setting up libgdbm6:armhf (1.21-1) ... Setting up pinentry-curses (1.1.1-1build1) ... Setting up libreadline8:armhf (8.1-2build1) ... Setting up libgdbm-compat4:armhf (1.21-1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22297295 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-22297295 --arch=armhf --dist=jammy-proposed --nolog libbpp-seq-omics_2.4.1-7.dsc Initiating build PACKAGEBUILD-22297295 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-062.buildd +==============================================================================+ | libbpp-seq-omics 2.4.1-7 (armhf) Tue, 19 Oct 2021 00:15:17 +0000 | +==============================================================================+ Package: libbpp-seq-omics Version: 2.4.1-7 Source Version: 2.4.1-7 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22297295/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq-omics_2.4.1-7.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-yltjs3/libbpp-seq-omics-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-yltjs3' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-CWjaIo/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-CWjaIo/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CWjaIo/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-CWjaIo/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CWjaIo/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-CWjaIo/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (47.7 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-CWjaIo/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (52.5 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12987 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev dpkg-deb: building package 'sbuild-build-depends-libbpp-seq-omics-dummy' in '/<>/resolver-CWjaIo/apt_archive/sbuild-build-depends-libbpp-seq-omics-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-seq-omics-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-CWjaIo/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CWjaIo/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CWjaIo/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CWjaIo/apt_archive ./ Sources [515 B] Get:5 copy:/<>/resolver-CWjaIo/apt_archive ./ Packages [594 B] Fetched 2072 B in 0s (56.8 kB/s) Reading package lists... Reading package lists... Install libbpp-seq-omics build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-libbpp-seq-omics-dummy 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 27.5 MB of archives. After this operation, 102 MB of additional disk space will be used. 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2.4+20151223.gitfa8646d.1-2build3 [53.0 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf libssh-4 armhf 0.9.6-1 [163 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl4 armhf 7.74.0-1.3ubuntu2 [238 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libjsoncpp24 armhf 1.9.4-5 [72.6 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf librhash0 armhf 1.4.2-1 [141 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf cmake armhf 3.18.4-2ubuntu2 [4131 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf d-shlibs all 0.102 [9904 B] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main armhf libtool all 2.4.6-15build1 [164 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf dh-autoreconf all 20 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libdw1 armhf 0.185-2 [225 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf debugedit armhf 1:5.0-0ubuntu2 [43.9 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf dwz armhf 0.14-1build1 [99.2 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf gettext armhf 0.21-4ubuntu3 [755 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf debhelper all 13.3.4ubuntu2 [921 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/universe armhf libbpp-core4 armhf 2.4.1-5 [500 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/universe armhf libbpp-core-dev armhf 2.4.1-5 [953 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/universe armhf libbpp-seq12 armhf 2.4.1-5 [431 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/universe armhf libbpp-seq-dev armhf 2.4.1-5 [755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.5 MB in 1s (19.8 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up libtool (2.4.6-15build1) ... Setting up libarchive13:armhf (3.4.3-2build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libldap-2.5-0:armhf (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbpp-core-dev (2.4.1-5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libcurl4:armhf (7.74.0-1.3ubuntu2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2ubuntu2) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up sbuild-build-depends-libbpp-seq-omics-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-159-generic arm64 (armv7l) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-7ubuntu2 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.10 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-arm-linux-gnueabihf_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 cmake_3.18.4-2ubuntu2 cmake-data_3.18.4-2ubuntu2 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-7ubuntu2 d-shlibs_0.102 dash_0.5.11+git20210120+802ebd4-1build1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-7ubuntu2 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-7ubuntu2 gcc-11-base_11.2.0-7ubuntu2 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu2 libapt-pkg6.0_2.3.10 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2build1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-7ubuntu2 libassuan0_2.5.5-1 libatomic1_11.2.0-7ubuntu2 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-7ubuntu1 libblkid1_2.36.1-8ubuntu2 libbpp-core-dev_2.4.1-5 libbpp-core4_2.4.1-5 libbpp-seq-dev_2.4.1-5 libbpp-seq12_2.4.1-5 libbrotli1_1.0.9-2build4 libbz2-1.0_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-7ubuntu2 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libcurl4_7.74.0-1.3ubuntu2 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-2 libelf1_0.185-2 libexpat1_2.4.1-2 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-11-dev_11.2.0-7ubuntu2 libgcc-s1_11.2.0-7ubuntu2 libgcrypt20_1.8.7-5ubuntu2 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-7ubuntu2 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libjson-c5_0.15-2build3 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmount1_2.36.1-8ubuntu2 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1build1 libnghttp2-14_1.43.0-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-5 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1build1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libpsl5_0.21.0-1.2build1 libreadline8_8.1-2build1 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2build3 libsasl2-2_2.1.27+dfsg-2.1build1 libsasl2-modules-db_2.1.27+dfsg-2.1build1 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsepol1_3.1-1ubuntu2 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.36.1-8ubuntu2 libsqlite3-0_3.36.0-2 libss2_1.46.3-1ubuntu3 libssh-4_0.9.6-1 libssl1.1_1.1.1l-1ubuntu1 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 libsub-override-perl_0.09-2 libsystemd0_248.3-1ubuntu8 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libubsan1_11.2.0-7ubuntu2 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu2 libuv1_1.40.0-2ubuntu1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.13.0-19.19 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 mount_2.36.1-8ubuntu2 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-seq-omics-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021a-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Oct 12 16:49:48 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.4.1-7.dsc dpkg-source: info: extracting libbpp-seq-omics in /<> dpkg-source: info: unpacking libbpp-seq-omics_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq-omics_2.4.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22297295 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22297295 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22297295 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbpp-seq-omics dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The CXX compiler identification is GNU 11.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color= Dependee "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/depend.internal". Dependee "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/depend.internal". Dependee "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/depend.internal". Dependee "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/depend.internal". Scanning dependencies of target bpp-seq-omics-static Scanning dependencies of target bpp-seq-omics-shared make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<>/src/Bpp/Seq/Io/Fastq.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<>/src/Bpp/Seq/Io/Fastq.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o [ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 68%] Linking CXX static library libbpp-seq-omics.a cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq-omics.a CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o [ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp /usr/bin/ranlib libbpp-seq-omics.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 69%] Built target bpp-seq-omics-static [ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 92%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [ 95%] Linking CXX shared library libbpp-seq-omics.so cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.3 -o libbpp-seq-omics.so.3.0.0 CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.3.0.0 libbpp-seq-omics.so.3 libbpp-seq-omics.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 95%] Built target bpp-seq-omics-shared make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= Dependee "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/DependInfo.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/depend.internal". Dependee "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/depend.internal". Dependee "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/DependInfo.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/depend.internal". Dependee "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/depend.internal". Scanning dependencies of target test_fastq Scanning dependencies of target test_gff make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 97%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o [ 97%] Building CXX object test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /<>/test/test_fastq.cpp cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /<>/test/test_gff.cpp [ 98%] Linking CXX executable test_gff cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_gff.dir/test_gff.cpp.o -o test_gff -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 98%] Built target test_gff [100%] Linking CXX executable test_fastq cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fastq.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_fastq.dir/test_fastq.cpp.o -o test_fastq -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target test_fastq make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=-j4 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/obj-arm-linux-gnueabihf Start 1: test_fastq Start 2: test_gff 1/2 Test #1: test_fastq ....................... Passed 0.01 sec 2/2 Test #2: test_gff ......................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.02 sec make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3 debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-seq-omics-dev PKGSHL=libbpp-seq-omics3 install -d -m 755 debian/libbpp-seq-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a 3894a86816c12ea3ab95c7aa951d9d7a21bab709 dh_makeshlibs -a -a dh_shlibdeps -a -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package libbpp-seq-omics-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing libbpp-seq-omics-dev (in debian/libbpp-seq-omics-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-omics3 (in debian/libbpp-seq-omics3); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-omics3-dbgsym (in debian/.debhelper/libbpp-seq-omics3/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/libbpp-seq-omics3/DEBIAN/control, package libbpp-seq-omics3, directory debian/libbpp-seq-omics3 INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... pkgstripfiles: processing control file: debian/.debhelper/libbpp-seq-omics3/dbgsym-root/DEBIAN/control, package libbpp-seq-omics3-dbgsym, directory debian/.debhelper/libbpp-seq-omics3/dbgsym-root dpkg-deb: building package 'libbpp-seq-omics3-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-seq-omics3/libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.deb'. INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... Renaming libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.deb to libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.ddeb INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/libbpp-seq-omics-dev/DEBIAN/control, package libbpp-seq-omics-dev, directory debian/libbpp-seq-omics-dev Searching for duplicated docs in dependency libbpp-seq-omics3... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... symlinking changelog.Debian.gz in libbpp-seq-omics-dev to file in libbpp-seq-omics3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-omics-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.4.1-7_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/libbpp-seq-omics3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-omics3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-omics3' in '../libbpp-seq-omics3_2.4.1-7_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libbpp-seq-omics_2.4.1-7_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-19T00:20:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-seq-omics_2.4.1-7_armhf.changes: --------------------------------------- Format: 1.8 Date: Tue, 12 Oct 2021 18:47:10 +0200 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3 Built-For-Profiles: noudeb Architecture: armhf Version: 2.4.1-7 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files) libbpp-seq-omics3 - Bio++ Sequence library: genomics components Closes: 984092 Changes: libbpp-seq-omics (2.4.1-7) unstable; urgency=medium . * Apply multi-arch hints. + libbpp-seq-omics-dev: Add Multi-Arch: same. * Update symbols file Closes: #984092 Checksums-Sha1: c9ba2e7c3f713cd723bf83f34650022f285ee6ce 425608 libbpp-seq-omics-dev_2.4.1-7_armhf.deb 6355b01eb22044ec16cfb024ab2d397611b95df6 5600096 libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.ddeb 8e4d64e7798e2b16f5088e885e13e0877d2124ca 202130 libbpp-seq-omics3_2.4.1-7_armhf.deb 32b1988a69fc6d5629b9eadda673c63bac74a8ea 7289 libbpp-seq-omics_2.4.1-7_armhf.buildinfo Checksums-Sha256: efc4fbbca0387bd744997cc8d9ac80bd7752e7433a6abbb45beb0c38ff590e7c 425608 libbpp-seq-omics-dev_2.4.1-7_armhf.deb 0c121d311613dd418cf1f3481dac94f9abcd5d0d210049b9aba8d68952c23945 5600096 libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.ddeb 2283967b416afc14619e2c0b3e08dadb8bf88002b4a970aa51d9a1b6d3f9fd2c 202130 libbpp-seq-omics3_2.4.1-7_armhf.deb db96f1b041d2eafd489dc69dee71a1e5deefdf3b74b7e2d0cd941e93f62ec85c 7289 libbpp-seq-omics_2.4.1-7_armhf.buildinfo Files: b292cc87fa4b575855b4f638d64703e3 425608 libdevel optional libbpp-seq-omics-dev_2.4.1-7_armhf.deb e4c0134dfb4a1638241ac3be8097e8a1 5600096 debug optional libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.ddeb 96ab55e1cc71acddf3b0e92114f403af 202130 libs optional libbpp-seq-omics3_2.4.1-7_armhf.deb 870bc6c2392410b2497ea8b1baf1280c 7289 science optional libbpp-seq-omics_2.4.1-7_armhf.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq-omics3-dbgsym Architecture: armhf Version: 2.4.1-7 Checksums-Md5: b292cc87fa4b575855b4f638d64703e3 425608 libbpp-seq-omics-dev_2.4.1-7_armhf.deb e4c0134dfb4a1638241ac3be8097e8a1 5600096 libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.ddeb 96ab55e1cc71acddf3b0e92114f403af 202130 libbpp-seq-omics3_2.4.1-7_armhf.deb Checksums-Sha1: c9ba2e7c3f713cd723bf83f34650022f285ee6ce 425608 libbpp-seq-omics-dev_2.4.1-7_armhf.deb 6355b01eb22044ec16cfb024ab2d397611b95df6 5600096 libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.ddeb 8e4d64e7798e2b16f5088e885e13e0877d2124ca 202130 libbpp-seq-omics3_2.4.1-7_armhf.deb Checksums-Sha256: efc4fbbca0387bd744997cc8d9ac80bd7752e7433a6abbb45beb0c38ff590e7c 425608 libbpp-seq-omics-dev_2.4.1-7_armhf.deb 0c121d311613dd418cf1f3481dac94f9abcd5d0d210049b9aba8d68952c23945 5600096 libbpp-seq-omics3-dbgsym_2.4.1-7_armhf.ddeb 2283967b416afc14619e2c0b3e08dadb8bf88002b4a970aa51d9a1b6d3f9fd2c 202130 libbpp-seq-omics3_2.4.1-7_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Tue, 19 Oct 2021 00:19:59 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), apt (= 2.3.10), 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0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-7ubuntu2), libcom-err2 (= 1.46.3-1ubuntu3), libcrypt-dev (= 1:4.4.18-4ubuntu2), libcrypt1 (= 1:4.4.18-4ubuntu2), libctf-nobfd0 (= 2.37-7ubuntu1), libctf0 (= 2.37-7ubuntu1), libcurl4 (= 7.74.0-1.3ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.3.4ubuntu2), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.185-2), libelf1 (= 0.185-2), libexpat1 (= 2.4.1-2), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-11-dev (= 11.2.0-7ubuntu2), libgcc-s1 (= 11.2.0-7ubuntu2), libgcrypt20 (= 1.8.7-5ubuntu2), libgdbm-compat4 (= 1.21-1), libgdbm6 (= 1.21-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.1-5ubuntu1), libgomp1 (= 11.2.0-7ubuntu2), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1build1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libjsoncpp24 (= 1.9.4-5), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.39-3build1), libmagic1 (= 1:5.39-3build1), libmount1 (= 2.36.1-8ubuntu2), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libncurses6 (= 6.2+20210905-1), libncursesw6 (= 6.2+20210905-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.3.1-5ubuntu11), libpam-modules-bin (= 1.3.1-5ubuntu11), libpam-runtime (= 1.3.1-5ubuntu11), libpam0g (= 1.3.1-5ubuntu11), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.3-1build1), libprocps8 (= 2:3.3.17-5ubuntu3), libpsl5 (= 0.21.0-1.2build1), librhash0 (= 1.4.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg-2.1build1), libsasl2-modules-db (= 2.1.27+dfsg-2.1build1), libseccomp2 (= 2.5.1-1ubuntu2), libselinux1 (= 3.1-3build3), libsemanage-common (= 3.1-1ubuntu3), libsemanage1 (= 3.1-1ubuntu3), libsepol1 (= 3.1-1ubuntu2), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.36.1-8ubuntu2), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-7ubuntu2), libstdc++6 (= 11.2.0-7ubuntu2), libsub-override-perl (= 0.09-2), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.17.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libubsan1 (= 11.2.0-7ubuntu2), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8ubuntu2), libuv1 (= 1.40.0-2ubuntu1), libxml2 (= 2.9.12+dfsg-5), libxxhash0 (= 0.8.0-2build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.13.0-19.19), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), passwd (= 1:4.8.1-1ubuntu9), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-5ubuntu3), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), ubuntu-keyring (= 2021.03.26), util-linux (= 2.36.1-8ubuntu2), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634057230" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-seq-omics-dev_2.4.1-7_armhf.deb -------------------------------------- new Debian package, version 2.0. size 425608 bytes: control archive=2179 bytes. 997 bytes, 21 lines control 4195 bytes, 48 lines md5sums Package: libbpp-seq-omics-dev Source: libbpp-seq-omics Version: 2.4.1-7 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3033 Depends: libbpp-seq-omics3 (= 2.4.1-7), libbpp-seq-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library: genomics components (development files) Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes dedicated to genomic sequencing. drwxr-xr-x root/root 0 2021-10-12 16:47 ./ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/Bed/ -rw-r--r-- root/root 4694 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -rw-r--r-- root/root 2497 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/FeatureReader.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/Gff/ -rw-r--r-- root/root 4782 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/Gtf/ -rw-r--r-- root/root 3639 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -rw-r--r-- root/root 20572 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/SequenceFeature.h -rw-r--r-- root/root 3441 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Io/ -rw-r--r-- root/root 4066 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Fastq.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Io/Maf/ -rw-r--r-- root/root 9903 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -rw-r--r-- root/root 2884 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -rw-r--r-- root/root 4640 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -rw-r--r-- root/root 2878 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -rw-r--r-- root/root 2916 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -rw-r--r-- root/root 3396 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -rw-r--r-- root/root 4524 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -rw-r--r-- root/root 3918 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -rw-r--r-- root/root 3060 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -rw-r--r-- root/root 3608 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -rw-r--r-- root/root 3781 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -rw-r--r-- root/root 3307 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -rw-r--r-- root/root 2724 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -rw-r--r-- root/root 4455 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/IterationListener.h -rw-r--r-- root/root 8676 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafBlock.h -rw-r--r-- root/root 6822 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafIterator.h -rw-r--r-- root/root 4248 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafParser.h -rw-r--r-- root/root 8026 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafSequence.h -rw-r--r-- root/root 22454 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -rw-r--r-- root/root 3223 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -rw-r--r-- root/root 4276 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -rw-r--r-- root/root 5518 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -rw-r--r-- root/root 3696 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -rw-r--r-- root/root 7473 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -rw-r--r-- root/root 3042 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -rw-r--r-- root/root 5728 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -rw-r--r-- root/root 3211 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -rw-r--r-- root/root 2999 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -rw-r--r-- root/root 4025 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -rw-r--r-- root/root 4120 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -rw-r--r-- root/root 3928 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -rw-r--r-- root/root 3136 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -rw-r--r-- root/root 3946 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -rw-r--r-- root/root 4026 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -rw-r--r-- root/root 2900 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/cmake/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/ -rw-r--r-- root/root 1722 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake -rw-r--r-- root/root 2326 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake -rw-r--r-- root/root 1587 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake -rw-r--r-- root/root 4001 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -rw-r--r-- root/root 2814960 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a lrwxrwxrwx root/root 0 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so -> libbpp-seq-omics.so.3 drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics-dev/ lrwxrwxrwx root/root 0 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics-dev/changelog.Debian.gz -> ../libbpp-seq-omics3/changelog.Debian.gz -rw-r--r-- root/root 23176 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics-dev/copyright libbpp-seq-omics3_2.4.1-7_armhf.deb ----------------------------------- new Debian package, version 2.0. size 202130 bytes: control archive=966 bytes. 1009 bytes, 21 lines control 250 bytes, 3 lines md5sums 48 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libbpp-seq-omics3 Source: libbpp-seq-omics Version: 2.4.1-7 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 466 Depends: libbpp-core4 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.32), libgcc-s1 (>= 3.5), libstdc++6 (>= 11) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library: genomics components Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the dynamic library of the Bio++ classes dedicated to genomic sequencing. drwxr-xr-x root/root 0 2021-10-12 16:47 ./ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3 -> libbpp-seq-omics.so.3.0.0 -rw-r--r-- root/root 439716 2021-10-12 16:47 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics3/ -rw-r--r-- root/root 1028 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics3/changelog.Debian.gz -rw-r--r-- root/root 23176 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics3/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 256 Distribution: jammy-proposed Host Architecture: armhf Install-Time: 24 Job: libbpp-seq-omics_2.4.1-7.dsc Machine Architecture: arm64 Package: libbpp-seq-omics Package-Time: 283 Source-Version: 2.4.1-7 Space: n/a Status: successful Version: 2.4.1-7 -------------------------------------------------------------------------------- Finished at 2021-10-19T00:20:00Z Build needed 00:04:43, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22297295 Scanning for processes to kill in build PACKAGEBUILD-22297295