https://launchpad.net/ubuntu/+source/libbpp-seq-omics/2.4.1-7/+build/22297297 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-003 5.11.0-1018-generic #19~20.04.2-Ubuntu SMP Tue Aug 24 14:10:28 UTC 2021 riscv64 Buildd toolchain package versions: launchpad-buildd_201~498~ubuntu18.04.1 python3-lpbuildd_201~498~ubuntu18.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 19 Oct 07:27:13 ntpdate[578058]: adjust time server 10.211.37.1 offset 0.001031 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22297297 --image-type chroot /home/buildd/filecache-default/9ed783c6a5db0471d0ab78e19ccad7f3f694c1e1 Creating target for build PACKAGEBUILD-22297297 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22297297 Starting target for build PACKAGEBUILD-22297297 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22297297 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22297297 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22297297 Updating target for build PACKAGEBUILD-22297297 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main riscv64 Packages [1291 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe riscv64 Packages [12.3 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5463 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 Packages [191 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [80.7 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 Packages [682 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [526 kB] Fetched 21.5 MB in 34s (639 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd bsdutils bzip2 ca-certificates coreutils debianutils fakeroot gzip libapparmor1 libapt-pkg6.0 libargon2-1 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libcap-ng0 libcap2 libcrypt-dev libcrypt1 libdb5.3 libdebconfclient0 libfakeroot libgdbm-compat4 libgdbm6 libgmp10 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre3 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libtasn1-6 libtinfo6 libuuid1 libzstd1 lockfile-progs make mawk mount ncurses-base ncurses-bin optipng patch pinentry-curses readline-common sed sensible-utils sysvinit-utils tar util-linux xz-utils 77 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.8 MB of archives. After this operation, 95.2 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcrypt-dev riscv64 1:4.4.18-4ubuntu2 [248 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcrypt1 riscv64 1:4.4.18-4ubuntu2 [97.6 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main riscv64 base-files riscv64 12ubuntu1 [62.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 bsdutils riscv64 1:2.36.1-8ubuntu2 [85.5 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main riscv64 coreutils riscv64 8.32-4ubuntu3 [1319 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 debianutils riscv64 5.5-1 [76.7 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main riscv64 gzip riscv64 1.10-4ubuntu2 [95.0 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libncurses6 riscv64 6.2+20210905-1 [93.2 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libncursesw6 riscv64 6.2+20210905-1 [126 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libtinfo6 riscv64 6.2+20210905-1 [96.4 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 ncurses-bin riscv64 6.2+20210905-1 [173 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main riscv64 sed riscv64 4.7-1ubuntu2 [186 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main riscv64 tar riscv64 1.34+dfsg-1build2 [274 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 util-linux riscv64 2.36.1-8ubuntu2 [1055 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdebconfclient0 riscv64 0.256ubuntu4 [5702 B] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 base-passwd riscv64 3.5.52 [48.9 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 ncurses-base all 6.2+20210905-1 [19.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main riscv64 sysvinit-utils riscv64 2.96-7ubuntu2 [20.4 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main riscv64 bzip2 riscv64 1.0.8-4ubuntu4 [33.8 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbz2-1.0 riscv64 1.0.8-4ubuntu4 [35.9 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblz4-1 riscv64 1.9.3-2build1 [71.0 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblzma5 riscv64 5.2.5-2build1 [94.2 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libzstd1 riscv64 1.4.8+dfsg-3 [370 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libapt-pkg6.0 riscv64 2.3.10 [915 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 apt riscv64 2.3.10 [1350 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 mount riscv64 2.36.1-8ubuntu2 [120 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libattr1 riscv64 1:2.5.1-1 [12.7 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main riscv64 libaudit-common all 1:3.0-2ubuntu3 [4688 B] Get:29 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcap-ng0 riscv64 0.7.9-2.2build2 [10.2 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main riscv64 libaudit1 riscv64 1:3.0-2ubuntu3 [44.4 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libblkid1 riscv64 2.36.1-8ubuntu2 [138 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcap2 riscv64 1:2.44-1build2 [16.2 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdb5.3 riscv64 5.3.28+dfsg1-0.8ubuntu2 [667 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgmp10 riscv64 2:6.2.1+dfsg-1ubuntu3 [245 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libgpg-error0 riscv64 1.42-3 [61.5 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libk5crypto3 riscv64 1.18.3-7 [101 kB] Get:37 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libkrb5support0 riscv64 1.18.3-7 [30.6 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libkrb5-3 riscv64 1.18.3-7 [338 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libgssapi-krb5-2 riscv64 1.18.3-7 [126 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkeyutils1 riscv64 1.6.1-2ubuntu2 [9128 B] Get:41 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libselinux1 riscv64 3.1-3build3 [70.6 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libmount1 riscv64 2.36.1-8ubuntu2 [146 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre3 riscv64 2:8.39-13build4 [171 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsemanage-common all 3.1-1ubuntu3 [9606 B] Get:45 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsemanage1 riscv64 3.1-1ubuntu3 [83.7 kB] Get:46 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsmartcols1 riscv64 2.36.1-8ubuntu2 [94.8 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libuuid1 riscv64 2.36.1-8ubuntu2 [26.4 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnettle8 riscv64 3.7.3-1build1 [189 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main riscv64 libhogweed6 riscv64 3.7.3-1build1 [192 kB] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libidn2-0 riscv64 2.3.2-2 [67.5 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libp11-kit0 riscv64 0.24.0-5 [203 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libtasn1-6 riscv64 4.17.0-2 [38.7 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main riscv64 mawk riscv64 1.3.4.20200120-2build1 [94.6 kB] Get:54 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 sensible-utils all 0.0.17 [20.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 ca-certificates all 20211016 [148 kB] Get:56 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libapparmor1 riscv64 3.0.3-0ubuntu2 [33.3 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main riscv64 libargon2-1 riscv64 0~20171227-0.2build22 [19.6 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main riscv64 libip4tc2 riscv64 1.8.7-1ubuntu3 [18.1 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjson-c5 riscv64 0.15-2build3 [28.8 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main riscv64 readline-common all 8.1-2build1 [53.6 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main riscv64 libreadline8 riscv64 8.1-2build1 [130 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libseccomp2 riscv64 2.5.1-1ubuntu2 [46.0 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsqlite3-0 riscv64 3.36.0-2 [575 kB] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libgdbm6 riscv64 1.21-1 [30.8 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main riscv64 xz-utils riscv64 5.2.5-2build1 [81.2 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfakeroot riscv64 1.25.3-1.1ubuntu3 [27.6 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main riscv64 fakeroot riscv64 1.25.3-1.1ubuntu3 [68.0 kB] Get:68 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libgdbm-compat4 riscv64 1.21-1 [5852 B] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libisl23 riscv64 0.24-2 [593 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmpfr6 riscv64 4.1.0-3build2 [251 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnpth0 riscv64 1.6-3build1 [7312 B] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 lockfile-progs riscv64 0.1.19 [9330 B] Get:73 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 make riscv64 4.3-4ubuntu2 [164 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 optipng riscv64 0.7.7-2 [84.4 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main riscv64 patch riscv64 2.7.6-7build1 [103 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main riscv64 pinentry-curses riscv64 1.1.1-1build1 [35.8 kB] Get:77 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libmpc3 riscv64 1.2.1-1 [44.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.8 MB in 3s (4042 kB/s) (Reading database ... 13170 files and directories currently installed.) 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Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libmpfr6:riscv64 (4.1.0-3build2) ... Setting up optipng (0.7.7-2) ... Setting up libncurses6:riscv64 (6.2+20210905-1) ... Setting up xz-utils (5.2.5-2build1) ... Setting up libmpc3:riscv64 (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up patch (2.7.6-7build1) ... Setting up libncursesw6:riscv64 (6.2+20210905-1) ... Setting up mount (2.36.1-8ubuntu2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:riscv64 (1:4.4.18-4ubuntu2) ... Setting up mawk (1.3.4.20200120-2build1) ... Setting up libisl23:riscv64 (0.24-2) ... Setting up libjson-c5:riscv64 (0.15-2build3) ... Setting up readline-common (8.1-2build1) ... Setting up libgdbm6:riscv64 (1.21-1) ... Setting up pinentry-curses (1.1.1-1build1) ... Setting up libreadline8:riscv64 (8.1-2build1) ... Setting up libgdbm-compat4:riscv64 (1.21-1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22297297 riscv64 jammy-proposed -c chroot:build-PACKAGEBUILD-22297297 --arch=riscv64 --dist=jammy-proposed --nolog libbpp-seq-omics_2.4.1-7.dsc Initiating build PACKAGEBUILD-22297297 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.11.0-1018-generic #19~20.04.2-Ubuntu SMP Tue Aug 24 14:10:28 UTC 2021 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-003.buildd +==============================================================================+ | libbpp-seq-omics 2.4.1-7 (riscv64) Tue, 19 Oct 2021 07:34:04 +0000 | +==============================================================================+ Package: libbpp-seq-omics Version: 2.4.1-7 Source Version: 2.4.1-7 Distribution: jammy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22297297/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-8qPLgQ/resolver-nAT034' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq-omics_2.4.1-7.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-8qPLgQ/libbpp-seq-omics-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-8qPLgQ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [391 B] Get:5 copy:/<>/apt_archive ./ Packages [470 B] Fetched 1818 B in 1s (3184 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 33.6 MB of archives. After this operation, 171 MB of additional disk space will be used. 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jammy/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build3 [54.7 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main riscv64 libssh-4 riscv64 0.9.6-1 [163 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcurl4 riscv64 7.74.0-1.3ubuntu2 [245 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libjsoncpp24 riscv64 1.9.4-5 [79.2 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 librhash0 riscv64 1.4.2-1 [143 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main riscv64 cmake riscv64 3.18.4-2ubuntu2 [4880 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/universe riscv64 d-shlibs all 0.102 [9904 B] Get:37 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtool all 2.4.6-15build1 [164 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:42 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libdw1 riscv64 0.185-2 [227 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main riscv64 debugedit riscv64 1:5.0-0ubuntu2 [50.5 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main riscv64 dwz riscv64 0.14-1build1 [105 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main riscv64 gettext riscv64 0.21-4ubuntu3 [769 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main riscv64 debhelper all 13.3.4ubuntu2 [921 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libbpp-core4 riscv64 2.4.1-5 [562 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libbpp-core-dev riscv64 2.4.1-5 [3456 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libbpp-seq12 riscv64 2.4.1-5 [500 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libbpp-seq-dev riscv64 2.4.1-5 [3064 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.6 MB in 9s (3609 kB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13172 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8ubuntu2_riscv64.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu2) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../01-libuchardet0_0.0.7-1build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_riscv64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../03-libpipeline1_1.5.3-1build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.3-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2build1_riscv64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../05-libelf1_0.185-2_riscv64.deb ... 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Setting up libmagic1:riscv64 (1:5.39-3build1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.39-3build1) ... Setting up libsasl2-modules-db:riscv64 (2.1.27+dfsg-2.1build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:riscv64 (1.40.0-2ubuntu1) ... Setting up libbpp-core4:riscv64 (2.4.1-5) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libsigsegv2:riscv64 (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up d-shlibs (0.102) ... Setting up libsasl2-2:riscv64 (2.1.27+dfsg-2.1build1) ... Setting up libssh-4:riscv64 (0.9.6-1) ... Setting up libjsoncpp24:riscv64 (1.9.4-5) ... Setting up librhash0:riscv64 (1.4.2-1) ... Setting up libuchardet0:riscv64 (0.0.7-1build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.18.4-2ubuntu2) ... Setting up libbpp-seq12:riscv64 (2.4.1-5) ... Setting up libelf1:riscv64 (0.185-2) ... Setting up libxml2:riscv64 (2.9.12+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libdw1:riscv64 (0.185-2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libtool (2.4.6-15build1) ... Setting up libarchive13:riscv64 (3.4.3-2build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libldap-2.5-0:riscv64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbpp-core-dev (2.4.1-5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libcurl4:riscv64 (7.74.0-1.3ubuntu2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2ubuntu2) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.11.0-1018-generic #19~20.04.2-Ubuntu SMP Tue Aug 24 14:10:28 UTC 2021 riscv64 (riscv64) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-7ubuntu2 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.10 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-riscv64-linux-gnu_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 cmake_3.18.4-2ubuntu2 cmake-data_3.18.4-2ubuntu2 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-7ubuntu2 d-shlibs_0.102 dash_0.5.11+git20210120+802ebd4-1build1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-7ubuntu2 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-7ubuntu2 gcc-11-base_11.2.0-7ubuntu2 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu2 libapt-pkg6.0_2.3.10 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2build1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-7ubuntu2 libassuan0_2.5.5-1 libatomic1_11.2.0-7ubuntu2 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-7ubuntu1 libblkid1_2.36.1-8ubuntu2 libbpp-core-dev_2.4.1-5 libbpp-core4_2.4.1-5 libbpp-seq-dev_2.4.1-5 libbpp-seq12_2.4.1-5 libbrotli1_1.0.9-2build4 libbz2-1.0_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-7ubuntu2 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libcurl4_7.74.0-1.3ubuntu2 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-2 libelf1_0.185-2 libexpat1_2.4.1-2 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-11-dev_11.2.0-7ubuntu2 libgcc-s1_11.2.0-7ubuntu2 libgcrypt20_1.8.7-5ubuntu2 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-7ubuntu2 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libjson-c5_0.15-2build3 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmount1_2.36.1-8ubuntu2 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1build1 libnghttp2-14_1.43.0-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-5 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1build1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libpsl5_0.21.0-1.2build1 libreadline8_8.1-2build1 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2build3 libsasl2-2_2.1.27+dfsg-2.1build1 libsasl2-modules-db_2.1.27+dfsg-2.1build1 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsepol1_3.1-1ubuntu2 libsigsegv2_2.13-1ubuntu2 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perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021a-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev, libbpp-seq-omics3 Architecture: any Version: 2.4.1-7 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq-omics Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq-omics.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev Package-List: libbpp-seq-omics-dev deb libdevel optional arch=any libbpp-seq-omics3 deb libs optional arch=any Checksums-Sha1: 9474c6f779a2c5aafc580288f97c1c2e33091591 107415 libbpp-seq-omics_2.4.1.orig.tar.gz 3e3d99e5e0ff7c4c6afd03a8cd460fbf533931a1 17120 libbpp-seq-omics_2.4.1-7.debian.tar.xz Checksums-Sha256: 200da925b42065998d825f0b2a37e26b00a865883c85bc332beb3a94cae1e08b 107415 libbpp-seq-omics_2.4.1.orig.tar.gz 2d4d4b28dadec71b0e0fca2dc89af5509360807273f915236a47c1f7b371d806 17120 libbpp-seq-omics_2.4.1-7.debian.tar.xz Files: fe5d906c557d94ef1341e78f240119d4 107415 libbpp-seq-omics_2.4.1.orig.tar.gz 32591e579b7beeeba9416dd5c9cb1792 17120 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F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.4.1-7.dsc dpkg-source: info: extracting libbpp-seq-omics in /<> dpkg-source: info: unpacking libbpp-seq-omics_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq-omics_2.4.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22297297 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22297297 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22297297 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbpp-seq-omics dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-riscv64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/riscv64-linux-gnu .. -- The CXX compiler identification is GNU 11.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/riscv64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/riscv64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/riscv64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-riscv64-linux-gnu dh_auto_build -a cd obj-riscv64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles /<>/obj-riscv64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/src /<>/obj-riscv64-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/src /<>/obj-riscv64-linux-gnu/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color= Dependee "/<>/obj-riscv64-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake" is newer than depender "/<>/obj-riscv64-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/depend.internal". 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Scanning dependencies of target bpp-seq-omics-shared make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' Scanning dependencies of target bpp-seq-omics-static make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o [ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<>/src/Bpp/Seq/Io/Fastq.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<>/src/Bpp/Seq/Io/Fastq.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 71%] Linking CXX shared library libbpp-seq-omics.so cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.3 -o libbpp-seq-omics.so.3.0.0 CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/riscv64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 -latomic cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.3.0.0 libbpp-seq-omics.so.3 libbpp-seq-omics.so make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 71%] Built target bpp-seq-omics-shared [ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color= Dependee "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_gff.dir/DependInfo.cmake" is newer than depender "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_gff.dir/depend.internal". Dependee "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_gff.dir/depend.internal". Scanning dependencies of target test_gff make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 80%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /<>/test/test_gff.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 84%] Linking CXX executable test_gff cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_gff.dir/test_gff.cpp.o -o test_gff -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/riscv64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 -latomic make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 84%] Built target test_gff make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend [ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= Dependee "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake" is newer than depender "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_fastq.dir/depend.internal". Dependee "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_fastq.dir/depend.internal". Scanning dependencies of target test_fastq make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 86%] Building CXX object test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /<>/test/test_fastq.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp [ 92%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 95%] Linking CXX executable test_fastq cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fastq.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_fastq.dir/test_fastq.cpp.o -o test_fastq -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/riscv64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 -latomic make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 95%] Built target test_fastq [ 96%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 97%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 98%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [100%] Linking CXX static library libbpp-seq-omics.a cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq-omics.a CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o 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/<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/riscv64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/riscv64-linux-gnu install -d -m 755 debian/libbpp-seq-omics3/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/riscv64-linux-gnu mv /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq-omics.so.3 debian/libbpp-seq-omics3/usr/lib/riscv64-linux-gnu mv /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq-omics.so.3.0.0 debian/libbpp-seq-omics3/usr/lib/riscv64-linux-gnu PKGDEV=libbpp-seq-omics-dev PKGSHL=libbpp-seq-omics3 install -d -m 755 debian/libbpp-seq-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/cmake debian/libbpp-seq-omics-dev/usr/lib/riscv64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a 6ec19ca345d44c289e236aeeaaa502a81e399d9c dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package libbpp-seq-omics-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing libbpp-seq-omics-dev (in debian/libbpp-seq-omics-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-omics3 (in debian/libbpp-seq-omics3); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-omics3-dbgsym (in debian/.debhelper/libbpp-seq-omics3/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/libbpp-seq-omics-dev/DEBIAN/control, package libbpp-seq-omics-dev, directory debian/libbpp-seq-omics-dev pkgstripfiles: processing control file: debian/libbpp-seq-omics3/DEBIAN/control, package libbpp-seq-omics3, directory debian/libbpp-seq-omics3 Searching for duplicated docs in dependency libbpp-seq-omics3... INFO: pkgstripfiles: waiting for lock (libbpp-seq-omics3) ... symlinking changelog.Debian.gz in libbpp-seq-omics-dev to file in libbpp-seq-omics3 pkgstripfiles: processing control file: debian/.debhelper/libbpp-seq-omics3/dbgsym-root/DEBIAN/control, package libbpp-seq-omics3-dbgsym, directory debian/.debhelper/libbpp-seq-omics3/dbgsym-root dpkg-deb: building package 'libbpp-seq-omics3-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-seq-omics3/libbpp-seq-omics3-dbgsym_2.4.1-7_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package libbpp-seq-omics-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.4.1-7_riscv64.deb'. pkgstripfiles: Truncating usr/share/doc/libbpp-seq-omics3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package libbpp-seq-omics3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-omics3' in '../libbpp-seq-omics3_2.4.1-7_riscv64.deb'. Renaming libbpp-seq-omics3-dbgsym_2.4.1-7_riscv64.deb to libbpp-seq-omics3-dbgsym_2.4.1-7_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libbpp-seq-omics_2.4.1-7_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-19T07:56:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-seq-omics_2.4.1-7_riscv64.changes: ----------------------------------------- Format: 1.8 Date: Tue, 12 Oct 2021 18:47:10 +0200 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3 Built-For-Profiles: noudeb Architecture: riscv64 Version: 2.4.1-7 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files) libbpp-seq-omics3 - Bio++ Sequence library: genomics components Closes: 984092 Changes: libbpp-seq-omics (2.4.1-7) unstable; urgency=medium . * Apply multi-arch hints. + libbpp-seq-omics-dev: Add Multi-Arch: same. * Update symbols file Closes: #984092 Checksums-Sha1: 592f287da9c3746b6205f50e1c28c1d5d6aaad9d 1930934 libbpp-seq-omics-dev_2.4.1-7_riscv64.deb 3a7ffedd71c14f23250c2a32ece8ea7651489ee1 4301650 libbpp-seq-omics3-dbgsym_2.4.1-7_riscv64.ddeb a313ca0feabadf29c69b93736233b55b39422fbf 218920 libbpp-seq-omics3_2.4.1-7_riscv64.deb ac1b5c09860e6e012cc98e1ea45c875867a67ab7 7255 libbpp-seq-omics_2.4.1-7_riscv64.buildinfo Checksums-Sha256: 030e276db69257c05a4573e59f7c26d97be05f47b83ac6a0f6f99ab215ce0eda 1930934 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq-omics3-dbgsym Architecture: riscv64 Version: 2.4.1-7 Checksums-Md5: 71a2bfda832520fd59fe061640922cd3 1930934 libbpp-seq-omics-dev_2.4.1-7_riscv64.deb 63634e28f7a2feb509b72b847ddbcf15 4301650 libbpp-seq-omics3-dbgsym_2.4.1-7_riscv64.ddeb aa1a963886ccb44a8e3c100f32699c29 218920 libbpp-seq-omics3_2.4.1-7_riscv64.deb Checksums-Sha1: 592f287da9c3746b6205f50e1c28c1d5d6aaad9d 1930934 libbpp-seq-omics-dev_2.4.1-7_riscv64.deb 3a7ffedd71c14f23250c2a32ece8ea7651489ee1 4301650 libbpp-seq-omics3-dbgsym_2.4.1-7_riscv64.ddeb a313ca0feabadf29c69b93736233b55b39422fbf 218920 libbpp-seq-omics3_2.4.1-7_riscv64.deb Checksums-Sha256: 030e276db69257c05a4573e59f7c26d97be05f47b83ac6a0f6f99ab215ce0eda 1930934 libbpp-seq-omics-dev_2.4.1-7_riscv64.deb ad7087257ce615479df8377a4d13179cf9fa19d0b7d7d1c7ad0b19047c8fc85a 4301650 libbpp-seq-omics3-dbgsym_2.4.1-7_riscv64.ddeb 103df39be1fc1b1e3835fbfdfc9cd0d453ffd5d311342951486384ab6eaf44d4 218920 libbpp-seq-omics3_2.4.1-7_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Tue, 19 Oct 2021 07:56:08 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), apt (= 2.3.10), autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu1), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), binutils-riscv64-linux-gnu (= 2.37-7ubuntu1), bsdextrautils (= 2.36.1-8ubuntu2), bsdutils (= 1:2.36.1-8ubuntu2), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), cmake (= 3.18.4-2ubuntu2), cmake-data (= 3.18.4-2ubuntu2), 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2021.03.26), util-linux (= 2.36.1-8ubuntu2), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634057230" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-seq-omics-dev_2.4.1-7_riscv64.deb ---------------------------------------- new Debian package, version 2.0. size 1930934 bytes: control archive=2178 bytes. 1000 bytes, 21 lines control 4185 bytes, 48 lines md5sums Package: libbpp-seq-omics-dev Source: libbpp-seq-omics Version: 2.4.1-7 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 16505 Depends: libbpp-seq-omics3 (= 2.4.1-7), libbpp-seq-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library: genomics components (development files) Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes dedicated to genomic sequencing. drwxr-xr-x root/root 0 2021-10-12 16:47 ./ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/Bed/ -rw-r--r-- root/root 4694 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -rw-r--r-- root/root 2497 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/FeatureReader.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/Gff/ -rw-r--r-- root/root 4782 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Feature/Gtf/ -rw-r--r-- root/root 3639 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -rw-r--r-- root/root 20572 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/SequenceFeature.h -rw-r--r-- root/root 3441 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Io/ -rw-r--r-- root/root 4066 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Fastq.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/include/Bpp/Seq/Io/Maf/ -rw-r--r-- root/root 9903 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -rw-r--r-- root/root 2884 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -rw-r--r-- root/root 4640 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -rw-r--r-- root/root 2878 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -rw-r--r-- root/root 2916 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -rw-r--r-- root/root 3396 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -rw-r--r-- root/root 4524 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -rw-r--r-- root/root 3918 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -rw-r--r-- root/root 3060 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -rw-r--r-- root/root 3608 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -rw-r--r-- root/root 3781 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -rw-r--r-- root/root 3307 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -rw-r--r-- root/root 2724 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -rw-r--r-- root/root 4455 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/IterationListener.h -rw-r--r-- root/root 8676 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafBlock.h -rw-r--r-- root/root 6822 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafIterator.h -rw-r--r-- root/root 4248 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafParser.h -rw-r--r-- root/root 8026 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafSequence.h -rw-r--r-- root/root 22454 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -rw-r--r-- root/root 3223 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -rw-r--r-- root/root 4276 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -rw-r--r-- root/root 5518 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -rw-r--r-- root/root 3696 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -rw-r--r-- root/root 7473 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -rw-r--r-- root/root 3042 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -rw-r--r-- root/root 5728 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -rw-r--r-- root/root 3211 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -rw-r--r-- root/root 2999 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -rw-r--r-- root/root 4025 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -rw-r--r-- root/root 4120 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -rw-r--r-- root/root 3928 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -rw-r--r-- root/root 3136 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -rw-r--r-- root/root 3946 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -rw-r--r-- root/root 4026 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -rw-r--r-- root/root 2900 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/cmake/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq-omics/ -rw-r--r-- root/root 1722 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake -rw-r--r-- root/root 2324 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake -rw-r--r-- root/root 1579 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake -rw-r--r-- root/root 3997 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -rw-r--r-- root/root 16610000 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/libbpp-seq-omics.a lrwxrwxrwx root/root 0 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/libbpp-seq-omics.so -> libbpp-seq-omics.so.3 drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics-dev/ lrwxrwxrwx root/root 0 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics-dev/changelog.Debian.gz -> ../libbpp-seq-omics3/changelog.Debian.gz -rw-r--r-- root/root 23176 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics-dev/copyright libbpp-seq-omics3_2.4.1-7_riscv64.deb ------------------------------------- new Debian package, version 2.0. size 218920 bytes: control archive=961 bytes. 1011 bytes, 21 lines control 248 bytes, 3 lines md5sums 48 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libbpp-seq-omics3 Source: libbpp-seq-omics Version: 2.4.1-7 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 610 Depends: libbpp-core4 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.32), libgcc-s1 (>= 3.4), libstdc++6 (>= 11) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library: genomics components Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the dynamic library of the Bio++ classes dedicated to genomic sequencing. drwxr-xr-x root/root 0 2021-10-12 16:47 ./ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/libbpp-seq-omics.so.3 -> libbpp-seq-omics.so.3.0.0 -rw-r--r-- root/root 587512 2021-10-12 16:47 ./usr/lib/riscv64-linux-gnu/libbpp-seq-omics.so.3.0.0 drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics3/ -rw-r--r-- root/root 1028 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics3/changelog.Debian.gz -rw-r--r-- root/root 23176 2021-10-12 16:47 ./usr/share/doc/libbpp-seq-omics3/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 348736 Build-Time: 1146 Distribution: jammy-proposed Host Architecture: riscv64 Install-Time: 160 Job: libbpp-seq-omics_2.4.1-7.dsc Machine Architecture: riscv64 Package: libbpp-seq-omics Package-Time: 1330 Source-Version: 2.4.1-7 Space: 348736 Status: successful Version: 2.4.1-7 -------------------------------------------------------------------------------- Finished at 2021-10-19T07:56:14Z Build needed 00:22:10, 348736k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22297297 Scanning for processes to kill in build PACKAGEBUILD-22297297 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22297297 Stopping target for build PACKAGEBUILD-22297297 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22297297 Removing build PACKAGEBUILD-22297297