https://launchpad.net/ubuntu/+source/libbpp-seq/2.4.1-10/+build/26502252 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-041 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:13:58 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 13 Aug 17:10:54 ntpdate[1913]: adjust time server 10.211.37.1 offset -0.000446 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=arm64 PACKAGEBUILD-26502252 --image-type chroot /home/buildd/filecache-default/f16216f5497f1f0724e8a3a0f3bd4b5063e2189b Creating target for build PACKAGEBUILD-26502252 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=arm64 PACKAGEBUILD-26502252 Starting target for build PACKAGEBUILD-26502252 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=arm64 PACKAGEBUILD-26502252 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26502252 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=arm64 PACKAGEBUILD-26502252 Updating target for build PACKAGEBUILD-26502252 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main arm64 Packages [1373 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe arm64 Packages [14.6 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5971 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 Packages [92.9 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [32.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe arm64 Packages [499 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [157 kB] Fetched 23.8 MB in 12s (1927 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgprofng0 libgssapi-krb5-2 libhogweed6 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libtsan2 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 149 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 150 MB of archives. After this operation, 158 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main arm64 libcrypt-dev arm64 1:4.4.36-2 [118 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libc6-dev arm64 2.38-1ubuntu3 [1571 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libc-dev-bin arm64 2.38-1ubuntu3 [19.4 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main arm64 libcrypt1 arm64 1:4.4.36-2 [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main arm64 linux-libc-dev arm64 6.3.0-7.7 [1518 kB] Get:6 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libc6 arm64 2.38-1ubuntu3 [2735 kB] Get:7 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libc-bin arm64 2.38-1ubuntu3 [589 kB] Get:8 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 gcc-13-base arm64 13.2.0-2ubuntu1 [42.9 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libgcc-s1 arm64 13.2.0-2ubuntu1 [46.7 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main arm64 base-files arm64 13ubuntu1 [74.1 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main arm64 debianutils arm64 5.8-1 [103 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main arm64 bash arm64 5.2.15-2ubuntu1 [780 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main arm64 bsdutils arm64 1:2.38.1-5ubuntu2 [94.5 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main arm64 coreutils arm64 9.1-1ubuntu2 [1347 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main arm64 liblzma5 arm64 5.4.1-0.2 [122 kB] Get:16 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libstdc++6 arm64 13.2.0-2ubuntu1 [731 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main arm64 libzstd1 arm64 1.5.5+dfsg2-1ubuntu2 [270 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main arm64 libgcrypt20 arm64 1.10.2-2ubuntu1 [470 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main arm64 libacl1 arm64 2.3.1-3 [16.3 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main arm64 libapparmor1 arm64 3.0.8-1ubuntu4 [46.5 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main arm64 libaudit-common all 1:3.1.1-1 [5426 B] Get:22 http://ftpmaster.internal/ubuntu mantic/main arm64 libcap-ng0 arm64 0.8.3-1build2 [14.6 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main arm64 libaudit1 arm64 1:3.1.1-1 [46.4 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main arm64 libblkid1 arm64 2.38.1-5ubuntu2 [110 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main arm64 libcap2 arm64 1:2.66-4ubuntu1 [29.1 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main arm64 libip4tc2 arm64 1.8.9-2ubuntu2 [22.3 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main arm64 libperl5.36 arm64 5.36.0-7ubuntu1 [4674 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main arm64 perl arm64 5.36.0-7ubuntu1 [235 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main arm64 perl-base arm64 5.36.0-7ubuntu1 [1730 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main arm64 perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:31 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libdb5.3 arm64 5.3.28+dfsg2-2 [731 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main arm64 zlib1g arm64 1:1.2.13.dfsg-1ubuntu5 [60.6 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main arm64 debconf all 1.5.82 [125 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libssl3 arm64 3.0.10-1ubuntu2 [1763 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main arm64 libkmod2 arm64 30+20230519-1ubuntu2 [49.3 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main arm64 libpcre2-8-0 arm64 10.42-2 [210 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main arm64 libselinux1 arm64 3.5-1 [77.5 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main arm64 libmount1 arm64 2.38.1-5ubuntu2 [119 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main arm64 libpam0g arm64 1.5.2-6ubuntu1 [65.8 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main arm64 libseccomp2 arm64 2.5.4-1ubuntu3 [49.3 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main arm64 systemd-sysv arm64 253.5-1ubuntu1 [11.5 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main arm64 systemd arm64 253.5-1ubuntu1 [2981 kB] Get:43 http://ftpmaster.internal/ubuntu mantic/main arm64 libsystemd-shared arm64 253.5-1ubuntu1 [1788 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main arm64 systemd-dev all 253.5-1ubuntu1 [78.5 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main arm64 libargon2-1 arm64 0~20190702+dfsg-3 [18.9 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main arm64 libudev1 arm64 253.5-1ubuntu1 [157 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main arm64 libdevmapper1.02.1 arm64 2:1.02.185-2ubuntu1 [128 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main arm64 libuuid1 arm64 2.38.1-5ubuntu2 [32.5 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main arm64 libcryptsetup12 arm64 2:2.6.1-4ubuntu1 [238 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main arm64 libfdisk1 arm64 2.38.1-5ubuntu2 [140 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main arm64 libp11-kit0 arm64 0.24.1-2ubuntu1 [226 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main arm64 mount arm64 2.38.1-5ubuntu2 [112 kB] Get:53 http://ftpmaster.internal/ubuntu mantic/main arm64 libsystemd0 arm64 253.5-1ubuntu1 [396 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main arm64 libapt-pkg6.0 arm64 2.7.3 [898 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main arm64 tar arm64 1.34+dfsg-1.2ubuntu1 [283 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main arm64 dpkg arm64 1.21.22ubuntu1 [1390 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main arm64 dash arm64 0.5.12-6ubuntu1 [89.9 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main arm64 diffutils arm64 1:3.8-4 [172 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main arm64 findutils arm64 4.9.0-5 [300 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main arm64 grep arm64 3.11-2 [158 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main arm64 hostname arm64 3.23+nmu1ubuntu1 [10.7 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main arm64 libncurses6 arm64 6.4+20230625-2 [109 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main arm64 libncursesw6 arm64 6.4+20230625-2 [142 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main arm64 libtinfo6 arm64 6.4+20230625-2 [104 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main arm64 ncurses-bin arm64 6.4+20230625-2 [184 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main arm64 sed arm64 4.9-1 [191 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main arm64 libsmartcols1 arm64 2.38.1-5ubuntu2 [58.2 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main arm64 util-linux-extra arm64 2.38.1-5ubuntu2 [81.4 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main arm64 util-linux arm64 2.38.1-5ubuntu2 [1074 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main arm64 init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main arm64 ncurses-base all 6.4+20230625-2 [24.5 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main arm64 sysvinit-utils arm64 3.07-1ubuntu1 [32.7 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main arm64 lsb-base all 11.6 [4606 B] Get:74 http://ftpmaster.internal/ubuntu mantic/main arm64 adduser all 3.137ubuntu1 [101 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main arm64 gpgv arm64 2.2.40-1.1ubuntu1 [135 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2ubuntu3 [241 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main arm64 libnettle8 arm64 3.9.1-2 [190 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main arm64 libhogweed6 arm64 3.9.1-2 [198 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main arm64 libidn2-0 arm64 2.3.4-1 [108 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main arm64 libtasn1-6 arm64 4.19.0-3 [42.8 kB] Get:81 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libgnutls30 arm64 3.8.1-3ubuntu1 [937 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main arm64 apt arm64 2.7.3 [1327 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main arm64 libpam-modules-bin arm64 1.5.2-6ubuntu1 [46.1 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main arm64 libpam-modules arm64 1.5.2-6ubuntu1 [283 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main arm64 logsave arm64 1.47.0-2ubuntu1 [21.6 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main arm64 libext2fs2 arm64 1.47.0-2ubuntu1 [221 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main arm64 e2fsprogs arm64 1.47.0-2ubuntu1 [590 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main arm64 init arm64 1.65.2ubuntu1 [5508 B] Get:89 http://ftpmaster.internal/ubuntu mantic/main arm64 libattr1 arm64 1:2.5.1-4 [12.2 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main arm64 libdebconfclient0 arm64 0.270ubuntu1 [11.0 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main arm64 libmd0 arm64 1.1.0-1 [24.4 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main arm64 libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main arm64 libsemanage-common all 3.5-1 [9890 B] Get:94 http://ftpmaster.internal/ubuntu mantic/main arm64 libsepol2 arm64 3.5-1 [289 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main arm64 libsemanage2 arm64 3.5-1 [89.3 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main arm64 usrmerge all 35ubuntu1 [58.2 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main arm64 libcom-err2 arm64 1.47.0-2ubuntu1 [21.6 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main arm64 libproc2-0 arm64 2:4.0.3-1ubuntu1 [53.1 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main arm64 libss2 arm64 1.47.0-2ubuntu1 [16.1 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main arm64 mawk arm64 1.3.4.20230730-1 [122 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main arm64 procps arm64 2:4.0.3-1ubuntu1 [606 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main arm64 sensible-utils all 0.0.20 [19.6 kB] Get:103 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 openssl arm64 3.0.10-1ubuntu2 [1166 kB] Get:104 http://ftpmaster.internal/ubuntu mantic/main arm64 ca-certificates all 20230311ubuntu1 [152 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main arm64 libgssapi-krb5-2 arm64 1.20.1-2 [139 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main arm64 libkrb5-3 arm64 1.20.1-2 [345 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main arm64 libkrb5support0 arm64 1.20.1-2 [32.6 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main arm64 libk5crypto3 arm64 1.20.1-2 [84.8 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main arm64 readline-common all 8.2-1.3 [55.7 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main arm64 libreadline8 arm64 8.2-1.3 [150 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main arm64 libsqlite3-0 arm64 3.42.0-1 [662 kB] Get:112 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 tzdata all 2023c-9ubuntu1 [270 kB] Get:113 http://ftpmaster.internal/ubuntu mantic/main arm64 libpng16-16 arm64 1.6.40-1 [182 kB] Get:114 http://ftpmaster.internal/ubuntu mantic/main arm64 xz-utils arm64 5.4.1-0.2 [271 kB] Get:115 http://ftpmaster.internal/ubuntu mantic/main arm64 advancecomp arm64 2.5-1 [171 kB] Get:116 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libgprofng0 arm64 2.41-4ubuntu1 [806 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libctf0 arm64 2.41-4ubuntu1 [94.7 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libctf-nobfd0 arm64 2.41-4ubuntu1 [98.9 kB] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.41-4ubuntu1 [3310 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libbinutils arm64 2.41-4ubuntu1 [753 kB] Get:121 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 binutils arm64 2.41-4ubuntu1 [18.0 kB] Get:122 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 binutils-common arm64 2.41-4ubuntu1 [248 kB] Get:123 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libsframe1 arm64 2.41-4ubuntu1 [14.1 kB] Get:124 http://ftpmaster.internal/ubuntu mantic/main arm64 libisl23 arm64 0.26-3 [713 kB] Get:125 http://ftpmaster.internal/ubuntu mantic/main arm64 libmpfr6 arm64 4.2.0-1 [256 kB] Get:126 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 cpp-13 arm64 13.2.0-2ubuntu1 [9533 kB] Get:127 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 g++ arm64 4:13.2.0-1ubuntu1 [1108 B] Get:128 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 gcc arm64 4:13.2.0-1ubuntu1 [5190 B] Get:129 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 cpp arm64 4:13.2.0-1ubuntu1 [28.9 kB] Get:130 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libcc1-0 arm64 13.2.0-2ubuntu1 [49.6 kB] Get:131 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libgomp1 arm64 13.2.0-2ubuntu1 [134 kB] Get:132 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libitm1 arm64 13.2.0-2ubuntu1 [27.9 kB] Get:133 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libatomic1 arm64 13.2.0-2ubuntu1 [11.7 kB] Get:134 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libasan8 arm64 13.2.0-2ubuntu1 [2747 kB] Get:135 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 liblsan0 arm64 13.2.0-2ubuntu1 [1184 kB] Get:136 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libubsan1 arm64 13.2.0-2ubuntu1 [1089 kB] Get:137 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libhwasan0 arm64 13.2.0-2ubuntu1 [1242 kB] Get:138 http://ftpmaster.internal/ubuntu mantic-proposed/universe arm64 g++-12 arm64 12.3.0-7ubuntu2 [10.9 MB] Get:139 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 gcc-12 arm64 12.3.0-7ubuntu2 [19.1 MB] Get:140 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 cpp-12 arm64 12.3.0-7ubuntu2 [9574 kB] Get:141 http://ftpmaster.internal/ubuntu mantic-proposed/universe arm64 libstdc++-12-dev arm64 12.3.0-7ubuntu2 [2168 kB] Get:142 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libgcc-12-dev arm64 12.3.0-7ubuntu2 [1157 kB] Get:143 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libtsan2 arm64 13.2.0-2ubuntu1 [2626 kB] Get:144 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 gcc-12-base arm64 12.3.0-7ubuntu2 [43.2 kB] Get:145 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libgcc-13-dev arm64 13.2.0-2ubuntu1 [2466 kB] Get:146 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 gcc-13 arm64 13.2.0-2ubuntu1 [19.1 MB] Get:147 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libstdc++-13-dev arm64 13.2.0-2ubuntu1 [2344 kB] Get:148 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 g++-13 arm64 13.2.0-2ubuntu1 [10.9 MB] Get:149 http://ftpmaster.internal/ubuntu mantic/main arm64 dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:150 http://ftpmaster.internal/ubuntu mantic/main arm64 libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/main arm64 lto-disabled-list all 42 [12.4 kB] Get:152 http://ftpmaster.internal/ubuntu mantic/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] Get:153 http://ftpmaster.internal/ubuntu mantic/main arm64 libfakeroot arm64 1.32.1-1 [31.8 kB] Get:154 http://ftpmaster.internal/ubuntu mantic/main arm64 fakeroot arm64 1.32.1-1 [59.7 kB] Get:155 http://ftpmaster.internal/ubuntu mantic/main arm64 gpg arm64 2.2.40-1.1ubuntu1 [509 kB] Get:156 http://ftpmaster.internal/ubuntu mantic/main arm64 gpgconf arm64 2.2.40-1.1ubuntu1 [95.3 kB] Get:157 http://ftpmaster.internal/ubuntu mantic/main arm64 gpg-agent arm64 2.2.40-1.1ubuntu1 [211 kB] Get:158 http://ftpmaster.internal/ubuntu mantic/main arm64 pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 150 MB in 1min 52s (1341 kB/s) (Reading database ... 13115 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.36-2_arm64.deb ... Unpacking libcrypt-dev:arm64 (1:4.4.36-2) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.38-1ubuntu3_arm64.deb ... Unpacking libc6-dev:arm64 (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Replacing files in old package libc6:arm64 (2.36-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.38-1ubuntu3_arm64.deb ... Unpacking libc-dev-bin (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.36-2_arm64.deb ... Unpacking libcrypt1:arm64 (1:4.4.36-2) over (1:4.4.33-1) ... Setting up libcrypt1:arm64 (1:4.4.36-2) ... (Reading database ... 13124 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.3.0-7.7_arm64.deb ... Unpacking linux-libc-dev:arm64 (6.3.0-7.7) over (5.19.0-21.21) ... Preparing to unpack .../libc6_2.38-1ubuntu3_arm64.deb ... Unpacking libc6:arm64 (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Setting up libc6:arm64 (2.38-1ubuntu3) ... (Reading database ... 13129 files and directories currently installed.) Preparing to unpack .../libc-bin_2.38-1ubuntu3_arm64.deb ... Unpacking libc-bin (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Setting up libc-bin (2.38-1ubuntu3) ... Selecting previously unselected package gcc-13-base:arm64. (Reading database ... 13131 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.2.0-2ubuntu1_arm64.deb ... Unpacking gcc-13-base:arm64 (13.2.0-2ubuntu1) ... Setting up gcc-13-base:arm64 (13.2.0-2ubuntu1) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-2ubuntu1_arm64.deb ... Unpacking libgcc-s1:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libgcc-s1:arm64 (13.2.0-2ubuntu1) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu1_arm64.deb ... Unpacking base-files (13ubuntu1) over (12.3ubuntu1) ... Setting up base-files (13ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../debianutils_5.8-1_arm64.deb ... Unpacking debianutils (5.8-1) over (5.7-0.4) ... Setting up debianutils (5.8-1) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_arm64.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-5ubuntu2_arm64.deb ... Unpacking bsdutils (1:2.38.1-5ubuntu2) over (1:2.38.1-4ubuntu1) ... Setting up bsdutils (1:2.38.1-5ubuntu2) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_arm64.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.2_arm64.deb ... Unpacking liblzma5:arm64 (5.4.1-0.2) over (5.2.9-0.0) ... Setting up liblzma5:arm64 (5.4.1-0.2) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libstdc++6_13.2.0-2ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libstdc++6:arm64 (13.2.0-2ubuntu1) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-1ubuntu2_arm64.deb ... Unpacking libzstd1:arm64 (1.5.5+dfsg2-1ubuntu2) over (1.5.2+dfsg-1) ... Setting up libzstd1:arm64 (1.5.5+dfsg2-1ubuntu2) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.2-2ubuntu1_arm64.deb ... Unpacking libgcrypt20:arm64 (1.10.2-2ubuntu1) over (1.10.1-2ubuntu1) ... Setting up libgcrypt20:arm64 (1.10.2-2ubuntu1) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-3_arm64.deb ... Unpacking libacl1:arm64 (2.3.1-3) over (2.3.1-2) ... Setting up libacl1:arm64 (2.3.1-3) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.0.8-1ubuntu4_arm64.deb ... Unpacking libapparmor1:arm64 (3.0.8-1ubuntu4) over (3.0.8-1ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a3.1.1-1_all.deb ... Unpacking libaudit-common (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit-common (1:3.1.1-1) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1build2_arm64.deb ... Unpacking libcap-ng0:arm64 (0.8.3-1build2) over (0.8.3-1build1) ... Setting up libcap-ng0:arm64 (0.8.3-1build2) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.1-1_arm64.deb ... Unpacking libaudit1:arm64 (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit1:arm64 (1:3.1.1-1) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libblkid1_2.38.1-5ubuntu2_arm64.deb ... Unpacking libblkid1:arm64 (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libblkid1:arm64 (2.38.1-5ubuntu2) ... (Reading database ... 13136 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4ubuntu1_arm64.deb ... Unpacking libcap2:arm64 (1:2.66-4ubuntu1) over (1:2.44-1build3) ... Setting up libcap2:arm64 (1:2.66-4ubuntu1) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.9-2ubuntu2_arm64.deb ... Unpacking libip4tc2:arm64 (1.8.9-2ubuntu2) over (1.8.7-1ubuntu7) ... Preparing to unpack .../libperl5.36_5.36.0-7ubuntu1_arm64.deb ... Unpacking libperl5.36:arm64 (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl_5.36.0-7ubuntu1_arm64.deb ... Unpacking perl (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-7ubuntu1_arm64.deb ... Unpacking perl-base (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Setting up perl-base (5.36.0-7ubuntu1) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7ubuntu1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-2_arm64.deb ... Unpacking libdb5.3:arm64 (5.3.28+dfsg2-2) over (5.3.28+dfsg1-0.10) ... Setting up libdb5.3:arm64 (5.3.28+dfsg2-2) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu5_arm64.deb ... Unpacking zlib1g:arm64 (1:1.2.13.dfsg-1ubuntu5) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:arm64 (1:1.2.13.dfsg-1ubuntu5) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../debconf_1.5.82_all.deb ... Unpacking debconf (1.5.82) over (1.5.79ubuntu1) ... Setting up debconf (1.5.82) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.10-1ubuntu2_arm64.deb ... Unpacking libssl3:arm64 (3.0.10-1ubuntu2) over (3.0.5-2ubuntu2) ... Preparing to unpack .../libkmod2_30+20230519-1ubuntu2_arm64.deb ... Unpacking libkmod2:arm64 (30+20230519-1ubuntu2) over (30+20220905-1ubuntu1) ... Preparing to unpack .../libpcre2-8-0_10.42-2_arm64.deb ... Unpacking libpcre2-8-0:arm64 (10.42-2) over (10.40-1ubuntu1) ... Setting up libpcre2-8-0:arm64 (10.42-2) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1_arm64.deb ... Unpacking libselinux1:arm64 (3.5-1) over (3.4-1build1) ... Setting up libselinux1:arm64 (3.5-1) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-5ubuntu2_arm64.deb ... Unpacking libmount1:arm64 (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libmount1:arm64 (2.38.1-5ubuntu2) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-6ubuntu1_arm64.deb ... Unpacking libpam0g:arm64 (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam0g:arm64 (1.5.2-6ubuntu1) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1ubuntu3_arm64.deb ... Unpacking libseccomp2:arm64 (2.5.4-1ubuntu3) over (2.5.4-1ubuntu2) ... Setting up libseccomp2:arm64 (2.5.4-1ubuntu3) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../systemd-sysv_253.5-1ubuntu1_arm64.deb ... Unpacking systemd-sysv (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libssl3:arm64 (3.0.10-1ubuntu2) ... (Reading database ... 13139 files and directories currently installed.) Preparing to unpack .../systemd_253.5-1ubuntu1_arm64.deb ... Unpacking systemd (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd-shared_253.5-1ubuntu1_arm64.deb ... Unpacking libsystemd-shared:arm64 (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Selecting previously unselected package systemd-dev. Preparing to unpack .../systemd-dev_253.5-1ubuntu1_all.deb ... Unpacking systemd-dev (253.5-1ubuntu1) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-3_arm64.deb ... Unpacking libargon2-1:arm64 (0~20190702+dfsg-3) over (0~20171227-0.3) ... Preparing to unpack .../libudev1_253.5-1ubuntu1_arm64.deb ... Unpacking libudev1:arm64 (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libudev1:arm64 (253.5-1ubuntu1) ... (Reading database ... 13194 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-2ubuntu1_arm64.deb ... Unpacking libdevmapper1.02.1:arm64 (2:1.02.185-2ubuntu1) over (2:1.02.185-1ubuntu1) ... Preparing to unpack .../libuuid1_2.38.1-5ubuntu2_arm64.deb ... Unpacking libuuid1:arm64 (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libuuid1:arm64 (2.38.1-5ubuntu2) ... (Reading database ... 13194 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.6.1-4ubuntu1_arm64.deb ... Unpacking libcryptsetup12:arm64 (2:2.6.1-4ubuntu1) over (2:2.5.0-6ubuntu3) ... Preparing to unpack .../libfdisk1_2.38.1-5ubuntu2_arm64.deb ... Unpacking libfdisk1:arm64 (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libp11-kit0_0.24.1-2ubuntu1_arm64.deb ... Unpacking libp11-kit0:arm64 (0.24.1-2ubuntu1) over (0.24.1-1ubuntu2) ... Setting up libp11-kit0:arm64 (0.24.1-2ubuntu1) ... (Reading database ... 13194 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-5ubuntu2_arm64.deb ... Unpacking mount (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libsystemd0_253.5-1ubuntu1_arm64.deb ... Unpacking libsystemd0:arm64 (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libsystemd0:arm64 (253.5-1ubuntu1) ... (Reading database ... 13195 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.3_arm64.deb ... Unpacking libapt-pkg6.0:arm64 (2.7.3) over (2.5.4) ... Setting up libapt-pkg6.0:arm64 (2.7.3) ... (Reading database ... 13195 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.2ubuntu1_arm64.deb ... Unpacking tar (1.34+dfsg-1.2ubuntu1) over (1.34+dfsg-1.1) ... Setting up tar (1.34+dfsg-1.2ubuntu1) ... (Reading database ... 13195 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.22ubuntu1_arm64.deb ... Unpacking dpkg (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.22ubuntu1) ... (Reading database ... 13198 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6ubuntu1_arm64.deb ... Unpacking dash (0.5.12-6ubuntu1) over (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... Setting up dash (0.5.12-6ubuntu1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-4_arm64.deb ... Unpacking diffutils (1:3.8-4) over (1:3.8-1) ... Setting up diffutils (1:3.8-4) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_arm64.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-3ubuntu1) ... Setting up findutils (4.9.0-5) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-2_arm64.deb ... Unpacking grep (3.11-2) over (3.8-3) ... Setting up grep (3.11-2) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu1ubuntu1_arm64.deb ... Unpacking hostname (3.23+nmu1ubuntu1) over (3.23ubuntu2) ... Setting up hostname (3.23+nmu1ubuntu1) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4+20230625-2_arm64.deb ... Unpacking libncurses6:arm64 (6.4+20230625-2) over (6.3+20220423-2) ... Preparing to unpack .../libncursesw6_6.4+20230625-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.4+20230625-2) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.4+20230625-2_arm64.deb ... Unpacking libtinfo6:arm64 (6.4+20230625-2) over (6.3+20220423-2) ... Setting up libtinfo6:arm64 (6.4+20230625-2) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20230625-2_arm64.deb ... Unpacking ncurses-bin (6.4+20230625-2) over (6.3+20220423-2) ... Setting up ncurses-bin (6.4+20230625-2) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_arm64.deb ... Unpacking sed (4.9-1) over (4.8-1ubuntu2) ... Setting up sed (4.9-1) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-5ubuntu2_arm64.deb ... Unpacking libsmartcols1:arm64 (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libsmartcols1:arm64 (2.38.1-5ubuntu2) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-5ubuntu2_arm64.deb ... Unpacking util-linux-extra (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux-extra (2.38.1-5ubuntu2) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-5ubuntu2_arm64.deb ... Unpacking util-linux (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux (2.38.1-5ubuntu2) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2ubuntu1_all.deb ... Unpacking init-system-helpers (1.65.2ubuntu1) over (1.65.2) ... Setting up init-system-helpers (1.65.2ubuntu1) ... (Reading database ... 13196 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20230625-2_all.deb ... Unpacking ncurses-base (6.4+20230625-2) over (6.3+20220423-2) ... Setting up ncurses-base (6.4+20230625-2) ... (Reading database ... 13194 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.2ubuntu1) ... Preparing to unpack .../sysvinit-utils_3.07-1ubuntu1_arm64.deb ... Unpacking sysvinit-utils (3.07-1ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.07-1ubuntu1) ... (Reading database ... 13194 files and directories currently installed.) Preparing to unpack .../adduser_3.137ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.137ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1ubuntu1_arm64.deb ... Unpacking gpgv (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Setting up gpgv (2.2.40-1.1ubuntu1) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2ubuntu3_arm64.deb ... Unpacking libgmp10:arm64 (2:6.3.0+dfsg-2ubuntu3) over (2:6.2.1+dfsg1-1.1ubuntu1) ... Setting up libgmp10:arm64 (2:6.3.0+dfsg-2ubuntu3) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2_arm64.deb ... Unpacking libnettle8:arm64 (3.9.1-2) over (3.8.1-2) ... Setting up libnettle8:arm64 (3.9.1-2) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2_arm64.deb ... Unpacking libhogweed6:arm64 (3.9.1-2) over (3.8.1-2) ... Setting up libhogweed6:arm64 (3.9.1-2) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.4-1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.4-1) over (2.3.3-1build1) ... Setting up libidn2-0:arm64 (2.3.4-1) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3_arm64.deb ... Unpacking libtasn1-6:arm64 (4.19.0-3) over (4.19.0-2) ... Setting up libtasn1-6:arm64 (4.19.0-3) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.1-3ubuntu1_arm64.deb ... Unpacking libgnutls30:arm64 (3.8.1-3ubuntu1) over (3.7.7-2ubuntu2) ... Setting up libgnutls30:arm64 (3.8.1-3ubuntu1) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.3_arm64.deb ... Unpacking apt (2.7.3) over (2.5.4) ... Setting up apt (2.7.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-6ubuntu1_arm64.deb ... Unpacking libpam-modules-bin (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules-bin (1.5.2-6ubuntu1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-6ubuntu1_arm64.deb ... Unpacking libpam-modules:arm64 (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules:arm64 (1.5.2-6ubuntu1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2ubuntu1_arm64.deb ... Unpacking logsave (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../libext2fs2_1.47.0-2ubuntu1_arm64.deb ... Unpacking libext2fs2:arm64 (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Setting up libext2fs2:arm64 (1.47.0-2ubuntu1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2ubuntu1_arm64.deb ... Unpacking e2fsprogs (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Setting up libargon2-1:arm64 (0~20190702+dfsg-3) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.185-2ubuntu1) ... Setting up libcryptsetup12:arm64 (2:2.6.1-4ubuntu1) ... Setting up libfdisk1:arm64 (2.38.1-5ubuntu2) ... Setting up libkmod2:arm64 (30+20230519-1ubuntu2) ... Setting up libapparmor1:arm64 (3.0.8-1ubuntu4) ... Setting up libip4tc2:arm64 (1.8.9-2ubuntu2) ... Setting up libsystemd-shared:arm64 (253.5-1ubuntu1) ... Setting up systemd-dev (253.5-1ubuntu1) ... Setting up mount (2.38.1-5ubuntu2) ... Setting up systemd (253.5-1ubuntu1) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (253.5-1ubuntu1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../init_1.65.2ubuntu1_arm64.deb ... Unpacking init (1.65.2ubuntu1) over (1.65.2) ... Preparing to unpack .../libattr1_1%3a2.5.1-4_arm64.deb ... Unpacking libattr1:arm64 (1:2.5.1-4) over (1:2.5.1-3) ... Setting up libattr1:arm64 (1:2.5.1-4) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270ubuntu1_arm64.deb ... Unpacking libdebconfclient0:arm64 (0.270ubuntu1) over (0.264ubuntu1) ... Setting up libdebconfclient0:arm64 (0.270ubuntu1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-1_arm64.deb ... Unpacking libmd0:arm64 (1.1.0-1) over (1.0.4-2) ... Setting up libmd0:arm64 (1.1.0-1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-6ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-runtime (1.5.2-6ubuntu1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1build1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-1_arm64.deb ... Unpacking libsepol2:arm64 (3.5-1) over (3.4-2) ... Setting up libsepol2:arm64 (3.5-1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1_arm64.deb ... Unpacking libsemanage2:arm64 (3.5-1) over (3.4-1build1) ... Setting up libsemanage2:arm64 (3.5-1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../usrmerge_35ubuntu1_all.deb ... Unpacking usrmerge (35ubuntu1) over (33ubuntu1) ... Setting up usrmerge (35ubuntu1) ... (Reading database ... 13155 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.47.0-2ubuntu1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.3-1ubuntu1_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.3-1ubuntu1) ... Preparing to unpack .../02-libss2_1.47.0-2ubuntu1_arm64.deb ... Unpacking libss2:arm64 (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../03-mawk_1.3.4.20230730-1_arm64.deb ... Unpacking mawk (1.3.4.20230730-1) over (1.3.4.20200120-3.1) ... Preparing to unpack .../04-procps_2%3a4.0.3-1ubuntu1_arm64.deb ... Unpacking procps (2:4.0.3-1ubuntu1) over (2:3.3.17-7ubuntu1) ... Preparing to unpack .../05-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) over (0.0.17) ... Preparing to unpack .../06-openssl_3.0.10-1ubuntu2_arm64.deb ... Unpacking openssl (3.0.10-1ubuntu2) over (3.0.5-2ubuntu2) ... Preparing to unpack .../07-ca-certificates_20230311ubuntu1_all.deb ... Unpacking ca-certificates (20230311ubuntu1) over (20211016ubuntu1) ... Preparing to unpack .../08-libgssapi-krb5-2_1.20.1-2_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../09-libkrb5-3_1.20.1-2_arm64.deb ... Unpacking libkrb5-3:arm64 (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../10-libkrb5support0_1.20.1-2_arm64.deb ... Unpacking libkrb5support0:arm64 (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../11-libk5crypto3_1.20.1-2_arm64.deb ... Unpacking libk5crypto3:arm64 (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../12-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../13-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../14-libsqlite3-0_3.42.0-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.42.0-1) over (3.40.0-1) ... Preparing to unpack .../15-tzdata_2023c-9ubuntu1_all.deb ... Unpacking tzdata (2023c-9ubuntu1) over (2022g-1ubuntu1) ... Preparing to unpack .../16-libpng16-16_1.6.40-1_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.40-1) over (1.6.39-2) ... Preparing to unpack .../17-xz-utils_5.4.1-0.2_arm64.deb ... Unpacking xz-utils (5.4.1-0.2) over (5.2.9-0.0) ... Preparing to unpack .../18-advancecomp_2.5-1_arm64.deb ... Unpacking advancecomp (2.5-1) over (2.4-1) ... Preparing to unpack .../19-libgprofng0_2.41-4ubuntu1_arm64.deb ... Unpacking libgprofng0:arm64 (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../20-libctf0_2.41-4ubuntu1_arm64.deb ... Unpacking libctf0:arm64 (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../21-libctf-nobfd0_2.41-4ubuntu1_arm64.deb ... Unpacking libctf-nobfd0:arm64 (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../22-binutils-aarch64-linux-gnu_2.41-4ubuntu1_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../23-libbinutils_2.41-4ubuntu1_arm64.deb ... Unpacking libbinutils:arm64 (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../24-binutils_2.41-4ubuntu1_arm64.deb ... Unpacking binutils (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../25-binutils-common_2.41-4ubuntu1_arm64.deb ... Unpacking binutils-common:arm64 (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Selecting previously unselected package libsframe1:arm64. Preparing to unpack .../26-libsframe1_2.41-4ubuntu1_arm64.deb ... Unpacking libsframe1:arm64 (2.41-4ubuntu1) ... Preparing to unpack .../27-libisl23_0.26-3_arm64.deb ... Unpacking libisl23:arm64 (0.26-3) over (0.25-1) ... Preparing to unpack .../28-libmpfr6_4.2.0-1_arm64.deb ... Unpacking libmpfr6:arm64 (4.2.0-1) over (4.1.0-3build3) ... Selecting previously unselected package cpp-13. Preparing to unpack .../29-cpp-13_13.2.0-2ubuntu1_arm64.deb ... Unpacking cpp-13 (13.2.0-2ubuntu1) ... Preparing to unpack .../30-g++_4%3a13.2.0-1ubuntu1_arm64.deb ... Unpacking g++ (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../31-gcc_4%3a13.2.0-1ubuntu1_arm64.deb ... Unpacking gcc (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../32-cpp_4%3a13.2.0-1ubuntu1_arm64.deb ... Unpacking cpp (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../33-libcc1-0_13.2.0-2ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../34-libgomp1_13.2.0-2ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../35-libitm1_13.2.0-2ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../36-libatomic1_13.2.0-2ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../37-libasan8_13.2.0-2ubuntu1_arm64.deb ... Unpacking libasan8:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../38-liblsan0_13.2.0-2ubuntu1_arm64.deb ... Unpacking liblsan0:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../39-libubsan1_13.2.0-2ubuntu1_arm64.deb ... Unpacking libubsan1:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../40-libhwasan0_13.2.0-2ubuntu1_arm64.deb ... Unpacking libhwasan0:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../41-g++-12_12.3.0-7ubuntu2_arm64.deb ... Unpacking g++-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../42-gcc-12_12.3.0-7ubuntu2_arm64.deb ... Unpacking gcc-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../43-cpp-12_12.3.0-7ubuntu2_arm64.deb ... Unpacking cpp-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../44-libstdc++-12-dev_12.3.0-7ubuntu2_arm64.deb ... Unpacking libstdc++-12-dev:arm64 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../45-libgcc-12-dev_12.3.0-7ubuntu2_arm64.deb ... Unpacking libgcc-12-dev:arm64 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../46-libtsan2_13.2.0-2ubuntu1_arm64.deb ... Unpacking libtsan2:arm64 (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../47-gcc-12-base_12.3.0-7ubuntu2_arm64.deb ... Unpacking gcc-12-base:arm64 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Selecting previously unselected package libgcc-13-dev:arm64. Preparing to unpack .../48-libgcc-13-dev_13.2.0-2ubuntu1_arm64.deb ... Unpacking libgcc-13-dev:arm64 (13.2.0-2ubuntu1) ... Selecting previously unselected package gcc-13. Preparing to unpack .../49-gcc-13_13.2.0-2ubuntu1_arm64.deb ... Unpacking gcc-13 (13.2.0-2ubuntu1) ... Selecting previously unselected package libstdc++-13-dev:arm64. Preparing to unpack .../50-libstdc++-13-dev_13.2.0-2ubuntu1_arm64.deb ... Unpacking libstdc++-13-dev:arm64 (13.2.0-2ubuntu1) ... Selecting previously unselected package g++-13. Preparing to unpack .../51-g++-13_13.2.0-2ubuntu1_arm64.deb ... Unpacking g++-13 (13.2.0-2ubuntu1) ... Preparing to unpack .../52-dpkg-dev_1.21.22ubuntu1_all.deb ... Unpacking dpkg-dev (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../53-libdpkg-perl_1.21.22ubuntu1_all.deb ... Unpacking libdpkg-perl (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../54-lto-disabled-list_42_all.deb ... Unpacking lto-disabled-list (42) over (37) ... Preparing to unpack .../55-build-essential_12.10ubuntu1_arm64.deb ... Unpacking build-essential (12.10ubuntu1) over (12.9ubuntu3) ... Preparing to unpack .../56-libfakeroot_1.32.1-1_arm64.deb ... Unpacking libfakeroot:arm64 (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../57-fakeroot_1.32.1-1_arm64.deb ... Unpacking fakeroot (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../58-gpg_2.2.40-1.1ubuntu1_arm64.deb ... Unpacking gpg (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../59-gpgconf_2.2.40-1.1ubuntu1_arm64.deb ... Unpacking gpgconf (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../60-gpg-agent_2.2.40-1.1ubuntu1_arm64.deb ... Unpacking gpg-agent (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../61-pkgbinarymangler_153_all.deb ... Unpacking pkgbinarymangler (153) over (149) ... Setting up lsb-base (11.6) ... Setting up lto-disabled-list (42) ... Setting up init (1.65.2ubuntu1) ... Setting up libsqlite3-0:arm64 (3.42.0-1) ... Setting up binutils-common:arm64 (2.41-4ubuntu1) ... Installing new version of config file /etc/gprofng.rc ... Setting up linux-libc-dev:arm64 (6.3.0-7.7) ... Setting up libctf-nobfd0:arm64 (2.41-4ubuntu1) ... Setting up libcom-err2:arm64 (1.47.0-2ubuntu1) ... Setting up libgomp1:arm64 (13.2.0-2ubuntu1) ... Setting up libsframe1:arm64 (2.41-4ubuntu1) ... Setting up libfakeroot:arm64 (1.32.1-1) ... Setting up libkrb5support0:arm64 (1.20.1-2) ... Setting up gcc-12-base:arm64 (12.3.0-7ubuntu2) ... Setting up tzdata (2023c-9ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Aug 13 17:13:57 UTC 2023. Universal Time is now: Sun Aug 13 17:13:57 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.32.1-1) ... Setting up perl-modules-5.36 (5.36.0-7ubuntu1) ... Setting up libmpfr6:arm64 (4.2.0-1) ... Setting up libncurses6:arm64 (6.4+20230625-2) ... Setting up xz-utils (5.4.1-0.2) ... Setting up libproc2-0:arm64 (2:4.0.3-1ubuntu1) ... Setting up libpng16-16:arm64 (1.6.40-1) ... Setting up libatomic1:arm64 (13.2.0-2ubuntu1) ... Setting up libss2:arm64 (1.47.0-2ubuntu1) ... Setting up libncursesw6:arm64 (6.4+20230625-2) ... Setting up libk5crypto3:arm64 (1.20.1-2) ... Setting up logsave (1.47.0-2ubuntu1) ... Setting up libubsan1:arm64 (13.2.0-2ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.20) ... Setting up libhwasan0:arm64 (13.2.0-2ubuntu1) ... Setting up libcrypt-dev:arm64 (1:4.4.36-2) ... Setting up libasan8:arm64 (13.2.0-2ubuntu1) ... Setting up procps (2:4.0.3-1ubuntu1) ... Setting up mawk (1.3.4.20230730-1) ... Setting up libkrb5-3:arm64 (1.20.1-2) ... Setting up libtsan2:arm64 (13.2.0-2ubuntu1) ... Setting up libbinutils:arm64 (2.41-4ubuntu1) ... Setting up libisl23:arm64 (0.26-3) ... Setting up libc-dev-bin (2.38-1ubuntu3) ... Setting up openssl (3.0.10-1ubuntu2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:arm64 (13.2.0-2ubuntu1) ... Setting up libperl5.36:arm64 (5.36.0-7ubuntu1) ... Setting up liblsan0:arm64 (13.2.0-2ubuntu1) ... Setting up libitm1:arm64 (13.2.0-2ubuntu1) ... Setting up libctf0:arm64 (2.41-4ubuntu1) ... Setting up cpp-12 (12.3.0-7ubuntu2) ... Setting up pkgbinarymangler (153) ... Setting up cpp-13 (13.2.0-2ubuntu1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up e2fsprogs (1.47.0-2ubuntu1) ... Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7ubuntu1) ... Setting up libgprofng0:arm64 (2.41-4ubuntu1) ... Setting up libgcc-12-dev:arm64 (12.3.0-7ubuntu2) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-2) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up libgcc-13-dev:arm64 (13.2.0-2ubuntu1) ... Setting up cpp (4:13.2.0-1ubuntu1) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:arm64 (2.38-1ubuntu3) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up libstdc++-13-dev:arm64 (13.2.0-2ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:arm64 (12.3.0-7ubuntu2) ... Setting up binutils-aarch64-linux-gnu (2.41-4ubuntu1) ... Setting up binutils (2.41-4ubuntu1) ... Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-7ubuntu2) ... Setting up gcc-13 (13.2.0-2ubuntu1) ... Setting up g++-12 (12.3.0-7ubuntu2) ... Setting up g++-13 (13.2.0-2ubuntu1) ... Setting up gcc (4:13.2.0-1ubuntu1) ... Setting up g++ (4:13.2.0-1ubuntu1) ... Setting up build-essential (12.10ubuntu1) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... Processing triggers for debianutils (5.8-1) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26502252 arm64 mantic-proposed -c chroot:build-PACKAGEBUILD-26502252 --arch=arm64 --dist=mantic-proposed --nolog libbpp-seq_2.4.1-10.dsc Initiating build PACKAGEBUILD-26502252 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:13:58 UTC 2023 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-041.buildd +==============================================================================+ | libbpp-seq 2.4.1-10 (arm64) Sun, 13 Aug 2023 17:14:10 +0000 | +==============================================================================+ Package: libbpp-seq Version: 2.4.1-10 Source Version: 2.4.1-10 Distribution: mantic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26502252/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-ZNJt7c/resolver-2Qv7FS' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq_2.4.1-10.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-seq-ZNJt7c/libbpp-seq-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-ZNJt7c' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [391 B] Get:5 copy:/<>/apt_archive ./ Packages [474 B] Fetched 1822 B in 0s (51.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 130 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [688 B] Get:2 http://ftpmaster.internal/ubuntu mantic/main arm64 libelf1 arm64 0.189-4 [56.2 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main arm64 libexpat1 arm64 2.5.0-2 [72.2 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main arm64 libicu72 arm64 72.1-3ubuntu2 [10.7 MB] Get:5 http://ftpmaster.internal/ubuntu mantic/main arm64 libxml2 arm64 2.9.14+dfsg-1.3 [722 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main arm64 bsdextrautils arm64 2.38.1-5ubuntu2 [68.8 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main arm64 libmagic-mgc arm64 1:5.44-3 [293 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main arm64 libmagic1 arm64 1:5.44-3 [84.3 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main arm64 file arm64 1:5.44-3 [21.8 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main arm64 gettext-base arm64 0.21-13 [37.1 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main arm64 libuchardet0 arm64 0.0.7-1build2 [77.3 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main arm64 groff-base arm64 1.23.0-2 [986 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main arm64 libnghttp2-14 arm64 1.55.1-1 [72.0 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main arm64 libpipeline1 arm64 1.5.7-1 [23.3 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main arm64 libpsl5 arm64 0.21.2-1 [59.0 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main arm64 libuv1 arm64 1.44.2-1 [87.3 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main arm64 man-db arm64 2.11.2-3 [1214 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main arm64 m4 arm64 1.4.19-3 [239 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main arm64 autoconf all 2.71-3 [339 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:22 http://ftpmaster.internal/ubuntu mantic/main arm64 autopoint all 0.21-13 [422 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main arm64 libarchive13 arm64 3.6.2-1ubuntu1 [371 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main arm64 libbrotli1 arm64 1.0.9-2build8 [312 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-3 [21.0 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-3 [54.0 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main arm64 libldap2 arm64 2.6.6+dfsg-1~exp1ubuntu1 [191 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build4 [59.2 kB] Get:29 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libssh-4 arm64 0.10.5-2 [186 kB] Get:30 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 libcurl4 arm64 8.2.1-1ubuntu2 [311 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main arm64 librhash0 arm64 1.4.3-3 [125 kB] Get:33 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 cmake-data all 3.27.2-1 [2127 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main arm64 cmake arm64 3.27.2-1 [10.1 MB] Get:35 http://ftpmaster.internal/ubuntu mantic/universe arm64 d-shlibs all 0.104 [10.2 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main arm64 libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main arm64 libtool all 2.4.7-7 [166 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main arm64 dh-autoreconf all 20 [16.1 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main arm64 libsub-override-perl all 0.09-4 [8706 B] Get:41 http://ftpmaster.internal/ubuntu mantic/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:43 http://ftpmaster.internal/ubuntu mantic/main arm64 libdw1 arm64 0.189-4 [253 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main arm64 dwz arm64 0.15-1 [110 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main arm64 gettext arm64 0.21-13 [841 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main arm64 debhelper all 13.11.4ubuntu3 [925 kB] Get:50 http://ftpmaster.internal/ubuntu mantic-proposed/universe arm64 libbpp-core4 arm64 2.4.1-10 [498 kB] Get:51 http://ftpmaster.internal/ubuntu mantic-proposed/universe arm64 libbpp-core-dev arm64 2.4.1-10 [1060 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.4 MB in 28s (1248 kB/s) Selecting previously unselected package libelf1:arm64. (Reading database ... 13557 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.189-4_arm64.deb ... Unpacking libelf1:arm64 (0.189-4) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../01-libexpat1_2.5.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../02-libicu72_72.1-3ubuntu2_arm64.deb ... Unpacking libicu72:arm64 (72.1-3ubuntu2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38.1-5ubuntu2_arm64.deb ... Unpacking bsdextrautils (2.38.1-5ubuntu2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../06-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-13_arm64.deb ... Unpacking gettext-base (0.21-13) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../09-libuchardet0_0.0.7-1build2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-2_arm64.deb ... Unpacking groff-base (1.23.0-2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../11-libnghttp2-14_1.55.1-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.55.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../12-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../13-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../14-libuv1_1.44.2-1_arm64.deb ... Unpacking libuv1:arm64 (1.44.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../15-man-db_2.11.2-3_arm64.deb ... Unpacking man-db (2.11.2-3) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.21-13_all.deb ... Unpacking autopoint (0.21-13) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../21-libarchive13_3.6.2-1ubuntu1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.2-1ubuntu1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../22-libbrotli1_1.0.9-2build8_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2build8) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../23-libsasl2-modules-db_2.1.28+dfsg1-3_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-3) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../24-libsasl2-2_2.1.28+dfsg1-3_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-3) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../25-libldap2_2.6.6+dfsg-1~exp1ubuntu1_arm64.deb ... Unpacking libldap2:arm64 (2.6.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2build4_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:arm64. Preparing to unpack .../27-libssh-4_0.10.5-2_arm64.deb ... Unpacking libssh-4:arm64 (0.10.5-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../28-libcurl4_8.2.1-1ubuntu2_arm64.deb ... Unpacking libcurl4:arm64 (8.2.1-1ubuntu2) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../29-libjsoncpp25_1.9.5-6_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-6) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../30-librhash0_1.4.3-3_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3) ... Selecting previously unselected package cmake-data. Preparing to unpack .../31-cmake-data_3.27.2-1_all.deb ... Unpacking cmake-data (3.27.2-1) ... Selecting previously unselected package cmake. Preparing to unpack .../32-cmake_3.27.2-1_arm64.deb ... Unpacking cmake (3.27.2-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../33-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.11.4ubuntu3_all.deb ... Unpacking libdebhelper-perl (13.11.4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../38-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../39-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../40-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:arm64. Preparing to unpack .../41-libdw1_0.189-4_arm64.deb ... Unpacking libdw1:arm64 (0.189-4) ... Selecting previously unselected package debugedit. Preparing to unpack .../42-debugedit_1%3a5.0-5_arm64.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-13_arm64.deb ... Unpacking gettext (0.21-13) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.11.4ubuntu3_all.deb ... Unpacking debhelper (13.11.4ubuntu3) ... Selecting previously unselected package libbpp-core4:arm64. Preparing to unpack .../48-libbpp-core4_2.4.1-10_arm64.deb ... Unpacking libbpp-core4:arm64 (2.4.1-10) ... Selecting previously unselected package libbpp-core-dev:arm64. Preparing to unpack .../49-libbpp-core-dev_2.4.1-10_arm64.deb ... Unpacking libbpp-core-dev:arm64 (2.4.1-10) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../50-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:arm64 (2.5.0-2) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libpsl5:arm64 (0.21.2-1) ... Setting up libicu72:arm64 (72.1-3ubuntu2) ... Setting up bsdextrautils (2.38.1-5ubuntu2) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4ubuntu3) ... Setting up libbrotli1:arm64 (1.0.9-2build8) ... Setting up libnghttp2-14:arm64 (1.55.1-1) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:arm64 (1.44.2-1) ... Setting up libbpp-core4:arm64 (2.4.1-10) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up autopoint (0.21-13) ... Setting up libjsoncpp25:arm64 (1.9.5-6) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-3) ... Setting up libssh-4:arm64 (0.10.5-2) ... Setting up autoconf (2.71-3) ... Setting up librhash0:arm64 (1.4.3-3) ... Setting up libuchardet0:arm64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up cmake-data (3.27.2-1) ... Setting up libelf1:arm64 (0.189-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3) ... Setting up libldap2:arm64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:arm64 (0.189-4) ... Setting up gettext (0.21-13) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:arm64 (3.6.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-core-dev:arm64 (2.4.1-10) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:arm64 (8.2.1-1ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up cmake (3.27.2-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:13:58 UTC 2023 arm64 (aarch64) Toolchain package versions: binutils_2.41-4ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 libc6-dev_2.38-1ubuntu3 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.41-4ubuntu1 binutils-aarch64-linux-gnu_2.41-4ubuntu1 binutils-common_2.41-4ubuntu1 bsdextrautils_2.38.1-5ubuntu2 bsdutils_1:2.38.1-5ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 cmake_3.27.2-1 cmake-data_3.27.2-1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-12_12.3.0-7ubuntu2 cpp-13_13.2.0-2ubuntu1 d-shlibs_0.104 dash_0.5.12-6ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22ubuntu1 dpkg-dev_1.21.22ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc_4:13.2.0-1ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-12-base_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 gcc-13-base_13.2.0-2ubuntu1 gettext_0.21-13 gettext-base_0.21-13 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu4 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1ubuntu1 libargon2-1_0~20190702+dfsg-3 libasan8_13.2.0-2ubuntu1 libassuan0_2.5.5-5 libatomic1_13.2.0-2ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-4ubuntu1 libblkid1_2.38.1-5ubuntu2 libbpp-core-dev_2.4.1-10 libbpp-core4_2.4.1-10 libbrotli1_1.0.9-2build8 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-1ubuntu3 libc-dev-bin_2.38-1ubuntu3 libc6_2.38-1ubuntu3 libc6-dev_2.38-1ubuntu3 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-2ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu1 libctf-nobfd0_2.41-4ubuntu1 libctf0_2.41-4ubuntu1 libcurl4_8.2.1-1ubuntu2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.21.22ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfdisk1_2.38.1-5ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-7ubuntu2 libgcc-13-dev_13.2.0-2ubuntu1 libgcc-s1_13.2.0-2ubuntu1 libgcrypt20_1.10.2-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2ubuntu3 libgnutls30_3.8.1-3ubuntu1 libgomp1_13.2.0-2ubuntu1 libgpg-error0_1.46-1 libgprofng0_2.41-4ubuntu1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.9.1-2 libhwasan0_13.2.0-2ubuntu1 libicu72_72.1-3ubuntu2 libidn2-0_2.3.4-1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-2ubuntu1 libjansson4_2.14-2 libjson-c5_0.16-2 libjsoncpp25_1.9.5-6 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_13.2.0-2ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.1.0-1 libmount1_2.38.1-5ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncurses6_6.4+20230625-2 libncursesw6_6.4+20230625-2 libnettle8_3.9.1-2 libnghttp2-14_1.55.1-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-2ubuntu1 libpam-modules_1.5.2-6ubuntu1 libpam-modules-bin_1.5.2-6ubuntu1 libpam-runtime_1.5.2-6ubuntu1 libpam0g_1.5.2-6ubuntu1 libpcre2-8-0_10.42-2 libperl5.36_5.36.0-7ubuntu1 libpipeline1_1.5.7-1 libpng16-16_1.6.40-1 libproc2-0_2:4.0.3-1ubuntu1 libprocps8_2:3.3.17-7ubuntu1 libpsl5_0.21.2-1 libreadline8_8.2-1.3 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1ubuntu3 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-4ubuntu1 libsmartcols1_2.38.1-5ubuntu2 libsqlite3-0_3.42.0-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-2 libssl3_3.0.10-1ubuntu2 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_253.5-1ubuntu1 libsystemd0_253.5-1ubuntu1 libtasn1-6_4.19.0-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-2ubuntu1 libubsan1_13.2.0-2ubuntu1 libuchardet0_0.0.7-1build2 libudev1_253.5-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-5ubuntu2 libuv1_1.44.2-1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1ubuntu2 linux-libc-dev_6.3.0-7.7 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-2ubuntu1 lsb-base_11.6 lto-disabled-list_42 m4_1.4.19-3 make_4.3-4.1build1 man-db_2.11.2-3 mawk_1.3.4.20230730-1 mount_2.38.1-5ubuntu2 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 openssl_3.0.10-1ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7ubuntu1 perl-base_5.36.0-7ubuntu1 perl-modules-5.36_5.36.0-7ubuntu1 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_153 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_253.5-1ubuntu1 systemd-dev_253.5-1ubuntu1 systemd-sysv_253.5-1ubuntu1 sysvinit-utils_3.07-1ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.38.1-5ubuntu2 util-linux-extra_2.38.1-5ubuntu2 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-seq Binary: libbpp-seq-dev, libbpp-seq12 Architecture: any Version: 2.4.1-10 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev Package-List: libbpp-seq-dev deb libdevel optional arch=any libbpp-seq12 deb libs optional arch=any Checksums-Sha1: a79687bdf2ce4c5c2031cb5da8394a9420804f90 322620 libbpp-seq_2.4.1.orig.tar.gz e7f4afad355dc327ef3a55ef9cc77dcb077b8de1 28208 libbpp-seq_2.4.1-10.debian.tar.xz Checksums-Sha256: dbfcb04803e4b7f08f9f159da8a947c91906c3ca8b20683ac193f6dc524d4655 322620 libbpp-seq_2.4.1.orig.tar.gz a38c526879ef263d2c256193735dfaedefecebdfa3ecde418274c1fd491a19ab 28208 libbpp-seq_2.4.1-10.debian.tar.xz Files: bdafc80aab9591ff79556138d6555941 322620 libbpp-seq_2.4.1.orig.tar.gz 3e53b8d2d122c4c7c8dc3a125ff5b923 28208 libbpp-seq_2.4.1-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmTYxTwACgkQPCZ2P2xn 5uKraBAAp4i121hkdvTFdymdPx5K8nYrbBCe/Ld4pVhX1oNAg/ZMJmNA2kodQEG0 td6lCvLPA4zXoKvD/Qd10zwAtpVz1b4Oj6RxJV5YBRJ3B25q3YZQ/rBj7Rl60fc9 pNGAEeNmYBXp/J+dFrJowzarGBniRz867AR0g5fXNGGzVQeuQh3SUw4ERcYJGDFl 2m+yOADOtuclpfSQApqDwNVtcVvXQVkT+C3u1WsE/9pGIgdLwr/v+EWTK6ZrAgAs /cf0RGhRMMmLANoNsGhVV4YhoHb8tYJc0M7IhLZiB55w+DPSfDGUCv26VZaEXfbr pHp8MTgWgMo14PJw/suSYpgPztxARpNqEmL7iVoVdEjzpxir2Hgh/2VtR/QBnmKz 3OSGBFLw7EJlR7MEVQBtn6JoHJETON2FbcW48FbqTXsHVYiVl66kkhBwBLbpt71D apPDr1LS4OEHUobKlUvxZhddhCkBgCdCBAJi106xXUM3YWzrxAMpOvbEYLD6GVEV xKNphLE2Z9OLJ2e/WOHqKwOL6zrJ0qcPOPA+Og0OkK+66iCUgMgddNbpYQWjFkwW 1sURexZoCpDSTRM8XQy5fvHxL/XrJ32nrM+7Oxn+TBDpT0bMKCHML2Vj2gooBm/n y+dOXI1IULTyL/xC2k6/aRCV0CdBOk/UCC+HcLgRL8lMP0zhX0w= =bBHQ -----END PGP SIGNATURE----- gpgv: Signature made Sun Aug 13 11:57:48 2023 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-seq_2.4.1-10.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-seq in /<> dpkg-source: info: unpacking libbpp-seq_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq_2.4.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26502252 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26502252 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26502252 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbpp-seq dpkg-buildpackage: info: source version 2.4.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.4s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-aarch64-linux-gnu dh_auto_build -a cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/depend make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src /<>/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src /<>/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 2%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o [ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 81%] Linking CXX static library libbpp-seq.a cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-static.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq.a "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o" In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp /usr/bin/ranlib libbpp-seq.a In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 82%] Built target bpp-seq-static [ 82%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 92%] Linking CXX shared library libbpp-seq.so cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq.so.12 -o libbpp-seq.so.12.0.0 "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o" /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq.so.12.0.0 libbpp-seq.so.12 libbpp-seq.so make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 92%] Built target bpp-seq-shared make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/depend make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test /<>/obj-aarch64-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test /<>/obj-aarch64-linux-gnu/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test /<>/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test /<>/obj-aarch64-linux-gnu/test/CMakeFiles/test_containers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 93%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o [ 93%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -MF CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o.d -o CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -c /<>/test/test_alphabets.cpp cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -MF CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o.d -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /<>/test/test_alignment_scores.cpp [ 95%] Building CXX object test/CMakeFiles/test_containers.dir/test_containers.cpp.o [ 95%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -MF CMakeFiles/test_bowker.dir/test_bowker.cpp.o.d -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<>/test/test_bowker.cpp cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_containers.dir/test_containers.cpp.o -MF CMakeFiles/test_containers.dir/test_containers.cpp.o.d -o CMakeFiles/test_containers.dir/test_containers.cpp.o -c /<>/test/test_containers.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_alignment_scores.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_containers.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/test/test_alphabets.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_bowker.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 95%] Linking CXX executable test_containers cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/<>/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 95%] Built target test_containers make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test /<>/obj-aarch64-linux-gnu/test/CMakeFiles/test_io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 96%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_io.dir/test_io.cpp.o -MF CMakeFiles/test_io.dir/test_io.cpp.o.d -o CMakeFiles/test_io.dir/test_io.cpp.o -c /<>/test/test_io.cpp [ 96%] Linking CXX executable test_alphabets cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -o test_alphabets -Wl,-rpath,/<>/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 [ 96%] Linking CXX executable test_bowker cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<>/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 [ 97%] Linking CXX executable test_alignment_scores cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_scores.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -o test_alignment_scores -Wl,-rpath,/<>/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 97%] Built target test_alphabets make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test /<>/obj-aarch64-linux-gnu/test/CMakeFiles/test_sequences.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o -MF CMakeFiles/test_sequences.dir/test_sequences.cpp.o.d -o CMakeFiles/test_sequences.dir/test_sequences.cpp.o -c /<>/test/test_sequences.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 98%] Built target test_bowker make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test /<>/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 99%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_walker.dir/test_walker.cpp.o -MF CMakeFiles/test_walker.dir/test_walker.cpp.o.d -o CMakeFiles/test_walker.dir/test_walker.cpp.o -c /<>/test/test_walker.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/test/test_io.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 99%] Built target test_alignment_scores In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_sequences.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/test/test_walker.cpp:42: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 99%] Linking CXX executable test_sequences cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o -o test_sequences -Wl,-rpath,/<>/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 99%] Built target test_sequences [ 99%] Linking CXX executable test_io cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_io.dir/test_io.cpp.o -o test_io -Wl,-rpath,/<>/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 [100%] Linking CXX executable test_walker cd /<>/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o -o test_walker -Wl,-rpath,/<>/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target test_io make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target test_walker make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh_auto_test -a cd obj-aarch64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /<>/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_alignment_scores 1: Test command: /<>/obj-aarch64-linux-gnu/test/test_alignment_scores 1: Working Directory: /<>/test 1: Test timeout computed to be: 60000 test 2 Start 2: test_alphabets 2: Test command: /<>/obj-aarch64-linux-gnu/test/test_alphabets 2: Working Directory: /<>/test 2: Test timeout computed to be: 60000 test 3 Start 3: test_bowker 3: Test command: /<>/obj-aarch64-linux-gnu/test/test_bowker 3: Working Directory: /<>/test 3: Test timeout computed to be: 60000 test 4 Start 4: test_containers 4: Test command: /<>/obj-aarch64-linux-gnu/test/test_containers 4: Working Directory: /<>/test 4: Test timeout computed to be: 60000 1: 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1: 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 0 1: 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1: 0.000000 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.333333 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 1: 0.000000 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.333333 1.000000 1.000000 1.000000 1.000000 1/7 Test #1: test_alignment_scores ............ Passed 0.01 sec test 5 Start 5: test_io 5: Test command: /<>/obj-aarch64-linux-gnu/test/test_io 5: Working Directory: /<>/test 5: Test timeout computed to be: 60000 2/7 Test #2: test_alphabets ................... Passed 0.01 sec test 6 Start 6: test_sequences 6: Test command: /<>/obj-aarch64-linux-gnu/test/test_sequences 6: Working Directory: /<>/test 6: Test timeout computed to be: 60000 3: 2 0.919699 4: 47 4: ----AUGCCG---GCGU----UUU----G--G-CCGACGUGUUUU-- 4: ---GAAGGCG---G-GU----UUU----GC-GACCGACG--UUUU-- 4: [>>> ] 8% [>>>> ] 12% [>>>>>> ] 17% [>>>>>>>> ] 21% [>>>>>>>>> ] 25% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 38% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>>>> ] 51% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 72% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 80% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 85% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 93% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% 4: 30 4: -AUGCCGGCGUUUUG-G-CCGACGUGUUUU 4: GAAGGCGG-GUUUUGCGACCGACG--UUUU 3/7 Test #4: test_containers .................. Passed 0.01 sec test 7 Start 7: test_walker 7: Test command: /<>/obj-aarch64-linux-gnu/test/test_walker 7: Working Directory: /<>/test 7: Test timeout computed to be: 60000 6: --- Strict match --- 6: ATTT: 0 6: TCG: 3 6: GATC: 29 6: CGTC: 33 6: CWCAT: 19 6: --- Degenerated match --- 6: CTCAT: 19 6: AAGCA: 16 4/7 Test #6: test_sequences ................... Passed 0.01 sec 5: example.fasta contains 100 sequences 7: 0 A 4 7: 1 U 5 7: 2 G 6 7: 3 C 7 7: 4 C 8 7: 5 G 9 7: 6 G 13 7: 7 C 14 7: 8 G 15 7: 9 U 16 7: 10 U 21 7: 11 U 22 7: 12 U 23 7: 13 G 28 7: 14 G 31 7: 15 C 33 7: 16 C 34 7: 17 G 35 7: 18 A 36 7: 19 C 37 7: 20 G 38 7: 21 U 39 7: 22 G 40 7: 23 U 41 7: 24 U 42 7: 25 U 43 7: 26 U 44 7: 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: _________________________________________________ 7: 0 - 0 7: 1 - 0 7: 2 - 0 7: 3 - 0 7: 4 A 0 7: 5 U 1 7: 6 G 2 7: 7 C 3 7: 8 C 4 7: 9 G 5 7: 10 - 5 7: 11 - 5 7: 12 - 5 7: 13 G 6 7: 14 C 7 7: 15 G 8 7: 16 U 9 7: 17 - 9 7: 18 - 9 7: 19 - 9 7: 20 - 9 7: 21 U 10 7: 22 U 11 7: 23 U 12 7: 24 - 12 7: 25 - 12 7: 26 - 12 7: 27 - 12 7: 28 G 13 7: 29 - 13 7: 30 - 13 7: 31 G 14 7: 32 - 14 7: 33 C 15 7: 34 C 16 7: 35 G 17 7: 36 A 18 7: 37 C 19 7: 38 G 20 7: 39 U 21 7: 40 G 22 7: 41 U 23 7: 42 U 24 7: 43 U 25 7: 44 U 26 7: 45 - 26 7: 46 - 26 7: 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 5/7 Test #7: test_walker ...................... Passed 0.03 sec 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 6/7 Test #5: test_io .......................... Passed 0.09 sec 3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0088 0.0522 0.1028 0.4946 3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0104 0.051 0.0982 0.5004 7/7 Test #3: test_bowker ...................... Passed 83.10 sec 100% tests passed, 0 tests failed out of 7 Total Test time (real) = 83.11 sec make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-aarch64-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-config.cmake -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.a -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.so.12 -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQuality.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequencePositionIterators.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App/SequenceApplicationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSite.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQualityTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Transliterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CodonSiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/GeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Sequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Site.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/StringSequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotation.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DNAToRNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolListTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolList.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DistanceMatrix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/SequenceFileIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/GenBank.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Fasta.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Phylip.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPhd.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/StreamSequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/MaseTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusIoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractIAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Stockholm.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Mase.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPoly.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Dcse.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Clustal.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/WordAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/Alphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNY.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWalker.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/MapSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/NucleicAcidsReplication.h -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-targets-none.cmake make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. set -e install -d -m 755 debian/libbpp-seq-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libbpp-seq12/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.a debian/libbpp-seq-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.so debian/libbpp-seq-dev/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.so.12 debian/libbpp-seq12/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 debian/libbpp-seq12/usr/lib/aarch64-linux-gnu PKGDEV=libbpp-seq-dev PKGSHL=libbpp-seq12 install -d -m 755 debian/libbpp-seq-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-dev/usr/include install -d -m 755 debian/libbpp-seq-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libbpp-seq-dev/usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a c4bb27e4fe292b7f38abaf20c733c5c8735b809d dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 pkgstriptranslations: processing libbpp-seq12 (in debian/libbpp-seq12); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-dev (in debian/libbpp-seq-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq12-dbgsym (in debian/.debhelper/libbpp-seq12/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq12/DEBIAN/control, package libbpp-seq12, directory debian/libbpp-seq12 INFO: pkgstripfiles: waiting for lock (libbpp-seq12) ... pkgstripfiles: processing control file: debian/.debhelper/libbpp-seq12/dbgsym-root/DEBIAN/control, package libbpp-seq12-dbgsym, directory debian/.debhelper/libbpp-seq12/dbgsym-root dpkg-deb: building package 'libbpp-seq12-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-seq12/libbpp-seq12-dbgsym_2.4.1-10_arm64.deb'. INFO: pkgstripfiles: waiting for lock (libbpp-seq12) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq12) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq12) ... INFO: pkgstripfiles: waiting for lock (libbpp-seq12) ... Renaming libbpp-seq12-dbgsym_2.4.1-10_arm64.deb to libbpp-seq12-dbgsym_2.4.1-10_arm64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq-dev/DEBIAN/control, package libbpp-seq-dev, directory debian/libbpp-seq-dev Searching for duplicated docs in dependency libbpp-seq12... symlinking changelog.Debian.gz in libbpp-seq-dev to file in libbpp-seq12 INFO: pkgstripfiles: waiting for lock (libbpp-seq12) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-dev' in '../libbpp-seq-dev_2.4.1-10_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq12 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq12' in '../libbpp-seq12_2.4.1-10_arm64.deb'. dpkg-genbuildinfo --build=any -O../libbpp-seq_2.4.1-10_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbpp-seq_2.4.1-10_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-13T17:24:09Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-seq_2.4.1-10_arm64.changes: ---------------------------------- Format: 1.8 Date: Sun, 13 Aug 2023 13:21:18 +0200 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 Built-For-Profiles: noudeb Architecture: arm64 Version: 2.4.1-10 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: libbpp-seq-dev - Bio++ Sequence library development files libbpp-seq12 - Bio++ Sequence library Closes: 1037721 1042204 Changes: libbpp-seq (2.4.1-10) unstable; urgency=medium . * Team upload. * Standards-Version: 4.6.2 (routine-update) * Update symbols for gcc-13. Closes: #1037721, #1042204 * d/patches/spelling: fix a typo * d/control: Use ${devlibs:Depends} for the -dev package. Checksums-Sha1: 4357aafa67550298b79734e3537263feb9e85c85 813810 libbpp-seq-dev_2.4.1-10_arm64.deb 97921e04e3f9b5663343b44dc4db938b6c685e37 5543248 libbpp-seq12-dbgsym_2.4.1-10_arm64.ddeb 7ed4fa7524e92e8c651e501ad37e476acc70cbaf 395954 libbpp-seq12_2.4.1-10_arm64.deb 27781496b69ba83415e80b4739758e886c8129c4 7164 libbpp-seq_2.4.1-10_arm64.buildinfo Checksums-Sha256: cde9112996a383dfe4cb8a6c3cefceba0dd0c62c64fb0498fea423467799066b 813810 libbpp-seq-dev_2.4.1-10_arm64.deb ba7d066f01accd5c1e06486f46a311f34a50b4d0f1077ab223a87f7dcf11b0bc 5543248 libbpp-seq12-dbgsym_2.4.1-10_arm64.ddeb 26a6a9e6df7bab86b3acbc948955e8db5d59daacaab01ee99318e3b7bf5a9b6a 395954 libbpp-seq12_2.4.1-10_arm64.deb 534d68e6a527a105946d4914700b7f05a10b74f287271596ebfbbd26aaa227f6 7164 libbpp-seq_2.4.1-10_arm64.buildinfo Files: 8bd41c0e1027966ff56c7a5f16d3a160 813810 libdevel optional libbpp-seq-dev_2.4.1-10_arm64.deb 58e03c156d2d4342b981e7d290007ee1 5543248 debug optional libbpp-seq12-dbgsym_2.4.1-10_arm64.ddeb a3afb66d82336673617d4b93e0aba0f4 395954 libs optional libbpp-seq12_2.4.1-10_arm64.deb 4b20ce10c7a66969a6fdfd3dca0ee536 7164 science optional libbpp-seq_2.4.1-10_arm64.buildinfo /<>/libbpp-seq_2.4.1-10_arm64.changes.new could not be renamed to /<>/libbpp-seq_2.4.1-10_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 libbpp-seq12-dbgsym Architecture: arm64 Version: 2.4.1-10 Checksums-Md5: 8bd41c0e1027966ff56c7a5f16d3a160 813810 libbpp-seq-dev_2.4.1-10_arm64.deb 58e03c156d2d4342b981e7d290007ee1 5543248 libbpp-seq12-dbgsym_2.4.1-10_arm64.ddeb a3afb66d82336673617d4b93e0aba0f4 395954 libbpp-seq12_2.4.1-10_arm64.deb Checksums-Sha1: 4357aafa67550298b79734e3537263feb9e85c85 813810 libbpp-seq-dev_2.4.1-10_arm64.deb 97921e04e3f9b5663343b44dc4db938b6c685e37 5543248 libbpp-seq12-dbgsym_2.4.1-10_arm64.ddeb 7ed4fa7524e92e8c651e501ad37e476acc70cbaf 395954 libbpp-seq12_2.4.1-10_arm64.deb Checksums-Sha256: cde9112996a383dfe4cb8a6c3cefceba0dd0c62c64fb0498fea423467799066b 813810 libbpp-seq-dev_2.4.1-10_arm64.deb ba7d066f01accd5c1e06486f46a311f34a50b4d0f1077ab223a87f7dcf11b0bc 5543248 libbpp-seq12-dbgsym_2.4.1-10_arm64.ddeb 26a6a9e6df7bab86b3acbc948955e8db5d59daacaab01ee99318e3b7bf5a9b6a 395954 libbpp-seq12_2.4.1-10_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Sun, 13 Aug 2023 17:24:08 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.3), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-4ubuntu1), binutils-aarch64-linux-gnu (= 2.41-4ubuntu1), binutils-common (= 2.41-4ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), cmake (= 3.27.2-1), cmake-data (= 3.27.2-1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-12 (= 12.3.0-7ubuntu2), cpp-13 (= 13.2.0-2ubuntu1), d-shlibs (= 0.104), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-2ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-12 (= 12.3.0-7ubuntu2), gcc-12-base (= 12.3.0-7ubuntu2), gcc-13 (= 13.2.0-2ubuntu1), gcc-13-base (= 13.2.0-2ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gpgv (= 2.2.40-1.1ubuntu1), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapt-pkg6.0 (= 2.7.3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1ubuntu1), libasan8 (= 13.2.0-2ubuntu1), libatomic1 (= 13.2.0-2ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4ubuntu1), libblkid1 (= 2.38.1-5ubuntu2), libbpp-core-dev (= 2.4.1-10), libbpp-core4 (= 2.4.1-10), libbrotli1 (= 1.0.9-2build8), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-1ubuntu3), libc-dev-bin (= 2.38-1ubuntu3), libc6 (= 2.38-1ubuntu3), libc6-dev (= 2.38-1ubuntu3), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-2ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4ubuntu1), libctf0 (= 2.41-4ubuntu1), libcurl4 (= 8.2.1-1ubuntu2), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.3.0-7ubuntu2), libgcc-13-dev (= 13.2.0-2ubuntu1), libgcc-s1 (= 13.2.0-2ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2ubuntu3), libgnutls30 (= 3.8.1-3ubuntu1), libgomp1 (= 13.2.0-2ubuntu1), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.41-4ubuntu1), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.9.1-2), libhwasan0 (= 13.2.0-2ubuntu1), libicu72 (= 72.1-3ubuntu2), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-2ubuntu1), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblsan0 (= 13.2.0-2ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.3-1ubuntu1), libpsl5 (= 0.21.2-1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-4ubuntu1), libsmartcols1 (= 2.38.1-5ubuntu2), libssh-4 (= 0.10.5-2), libssl3 (= 3.0.10-1ubuntu2), libstdc++-13-dev (= 13.2.0-2ubuntu1), libstdc++6 (= 13.2.0-2ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-2ubuntu1), libubsan1 (= 13.2.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5ubuntu2), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.3), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 42), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), passwd (= 1:4.13+dfsg1-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), ubuntu-keyring (= 2021.03.26), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1691925678" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-seq-dev_2.4.1-10_arm64.deb --------------------------------- new Debian package, version 2.0. size 813810 bytes: control archive=4320 bytes. 954 bytes, 21 lines control 10821 bytes, 133 lines md5sums Package: libbpp-seq-dev Source: libbpp-seq Version: 2.4.1-10 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 7152 Depends: libbpp-seq12 (= 2.4.1-10), libbpp-core-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library development files Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of Bio++ classes for sequence analysis classes. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Alphabet/ -rw-r--r-- root/root 8838 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -rw-r--r-- root/root 17141 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/Alphabet.h -rw-r--r-- root/root 6250 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -rw-r--r-- root/root 2835 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -rw-r--r-- root/root 3834 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetState.h -rw-r--r-- root/root 8263 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetTools.h -rw-r--r-- root/root 2907 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h -rw-r--r-- root/root 4501 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h -rw-r--r-- root/root 13007 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h -rw-r--r-- root/root 3083 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/DNA.h -rw-r--r-- root/root 2991 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h -rw-r--r-- root/root 2984 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h -rw-r--r-- root/root 4080 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h -rw-r--r-- root/root 3307 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h -rw-r--r-- root/root 8599 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h -rw-r--r-- root/root 4181 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h -rw-r--r-- root/root 3759 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -rw-r--r-- root/root 4621 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -rw-r--r-- root/root 2784 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -rw-r--r-- root/root 3032 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNA.h -rw-r--r-- root/root 4111 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNY.h -rw-r--r-- root/root 15640 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/WordAlphabet.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/AlphabetIndex/ -rw-r--r-- root/root 5055 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -rw-r--r-- root/root 4300 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -rw-r--r-- root/root 3649 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -rw-r--r-- root/root 3647 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -rw-r--r-- root/root 3570 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h -rw-r--r-- root/root 3271 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h -rw-r--r-- root/root 4018 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h -rw-r--r-- root/root 3484 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h -rw-r--r-- root/root 3649 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h -rw-r--r-- root/root 3676 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h -rw-r--r-- root/root 3675 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h -rw-r--r-- root/root 3544 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h -rw-r--r-- root/root 3563 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h -rw-r--r-- root/root 3083 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h -rw-r--r-- root/root 3416 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h -rw-r--r-- root/root 3226 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h -rw-r--r-- root/root 3561 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h -rw-r--r-- root/root 5531 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h -rw-r--r-- root/root 4135 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h -rw-r--r-- root/root 4096 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h -rw-r--r-- root/root 4088 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h -rw-r--r-- root/root 3681 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h -rw-r--r-- root/root 4189 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h -rw-r--r-- root/root 3292 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h -rw-r--r-- root/root 3195 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/App/ -rw-r--r-- root/root 12347 2018-08-13 21:41 ./usr/include/Bpp/Seq/App/SequenceApplicationTools.h -rw-r--r-- root/root 11040 2018-08-13 21:41 ./usr/include/Bpp/Seq/CodonSiteTools.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Container/ -rw-r--r-- root/root 4968 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h -rw-r--r-- root/root 7089 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h -rw-r--r-- root/root 11864 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h -rw-r--r-- root/root 7851 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/MapSequenceContainer.h -rw-r--r-- root/root 8721 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h -rw-r--r-- root/root 11011 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainer.h -rw-r--r-- root/root 4345 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h -rw-r--r-- root/root 3137 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainerIterator.h -rw-r--r-- root/root 12842 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainerTools.h -rw-r--r-- root/root 6732 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainer.h -rw-r--r-- root/root 2936 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainerExceptions.h -rw-r--r-- root/root 3884 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainerIterator.h -rw-r--r-- root/root 23382 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainerTools.h -rw-r--r-- root/root 9718 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/VectorSequenceContainer.h -rw-r--r-- root/root 9499 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/VectorSiteContainer.h -rw-r--r-- root/root 6403 2018-08-13 21:41 ./usr/include/Bpp/Seq/CoreSequence.h -rw-r--r-- root/root 4280 2018-08-13 21:41 ./usr/include/Bpp/Seq/CoreSite.h -rw-r--r-- root/root 3190 2018-08-13 21:41 ./usr/include/Bpp/Seq/DNAToRNA.h -rw-r--r-- root/root 7430 2018-08-13 21:41 ./usr/include/Bpp/Seq/DistanceMatrix.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/GeneticCode/ -rw-r--r-- root/root 3612 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h -rw-r--r-- root/root 3483 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h -rw-r--r-- root/root 8386 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/GeneticCode.h -rw-r--r-- root/root 3599 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h -rw-r--r-- root/root 3629 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h -rw-r--r-- root/root 3427 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h -rw-r--r-- root/root 3686 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h -rw-r--r-- root/root 3441 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Io/ -rw-r--r-- root/root 5418 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractIAlignment.h -rw-r--r-- root/root 5352 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractISequence.h -rw-r--r-- root/root 2631 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractOAlignment.h -rw-r--r-- root/root 3393 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractOSequence.h -rw-r--r-- root/root 3322 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h -rw-r--r-- root/root 3332 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h -rw-r--r-- root/root 3950 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h -rw-r--r-- root/root 3950 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h -rw-r--r-- root/root 3311 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h -rw-r--r-- root/root 3339 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h -rw-r--r-- root/root 3313 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h -rw-r--r-- root/root 4752 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Clustal.h -rw-r--r-- root/root 3252 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Dcse.h -rw-r--r-- root/root 7377 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Fasta.h -rw-r--r-- root/root 2698 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/GenBank.h -rw-r--r-- root/root 4259 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/ISequence.h -rw-r--r-- root/root 2583 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/ISequenceStream.h -rw-r--r-- root/root 2156 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequence.h -rw-r--r-- root/root 4292 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequenceFactory.h -rw-r--r-- root/root 2057 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequenceStream.h -rw-r--r-- root/root 8432 2023-08-13 11:21 ./usr/include/Bpp/Seq/Io/Mase.h -rw-r--r-- root/root 5904 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/MaseTools.h -rw-r--r-- root/root 4723 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/NexusIoSequence.h -rw-r--r-- root/root 2961 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/NexusTools.h -rw-r--r-- root/root 4284 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/OSequence.h -rw-r--r-- root/root 2481 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/OSequenceStream.h -rw-r--r-- root/root 4873 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/PhredPhd.h -rw-r--r-- root/root 2918 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/PhredPoly.h -rw-r--r-- root/root 6671 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Phylip.h -rw-r--r-- root/root 2571 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/SequenceFileIndex.h -rw-r--r-- root/root 3752 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Stockholm.h -rw-r--r-- root/root 4174 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/StreamSequenceIterator.h -rw-r--r-- root/root 3540 2018-08-13 21:41 ./usr/include/Bpp/Seq/NucleicAcidsReplication.h -rw-r--r-- root/root 11109 2018-08-13 21:41 ./usr/include/Bpp/Seq/Sequence.h -rw-r--r-- root/root 4566 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceExceptions.h -rw-r--r-- root/root 3171 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceIterator.h -rw-r--r-- root/root 6708 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequencePositionIterators.h -rw-r--r-- root/root 16583 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceTools.h -rw-r--r-- root/root 2890 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWalker.h -rw-r--r-- root/root 14418 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithAnnotation.h -rw-r--r-- root/root 7050 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithAnnotationTools.h -rw-r--r-- root/root 25452 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithQuality.h -rw-r--r-- root/root 7161 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithQualityTools.h -rw-r--r-- root/root 5750 2018-08-13 21:41 ./usr/include/Bpp/Seq/Site.h -rw-r--r-- root/root 3331 2018-08-13 21:41 ./usr/include/Bpp/Seq/SiteExceptions.h -rw-r--r-- root/root 2354 2018-08-13 21:41 ./usr/include/Bpp/Seq/SiteIterator.h -rw-r--r-- root/root 8688 2018-08-13 21:41 ./usr/include/Bpp/Seq/SiteTools.h -rw-r--r-- root/root 7494 2018-08-13 21:41 ./usr/include/Bpp/Seq/StringSequenceTools.h -rw-r--r-- root/root 21226 2018-08-13 21:41 ./usr/include/Bpp/Seq/SymbolList.h -rw-r--r-- root/root 8167 2018-08-13 21:41 ./usr/include/Bpp/Seq/SymbolListTools.h -rw-r--r-- root/root 5580 2018-08-13 21:41 ./usr/include/Bpp/Seq/Transliterator.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/cmake/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/cmake/bpp-seq/ -rw-r--r-- root/root 2765 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-config-version.cmake -rw-r--r-- root/root 2259 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-config.cmake -rw-r--r-- root/root 1486 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-targets-none.cmake -rw-r--r-- root/root 4571 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/cmake/bpp-seq/bpp-seq-targets.cmake -rw-r--r-- root/root 6471712 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/libbpp-seq.a lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/libbpp-seq.so -> libbpp-seq.so.12 drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/ lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/changelog.Debian.gz -> ../libbpp-seq12/changelog.Debian.gz -rw-r--r-- root/root 23163 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/copyright libbpp-seq12_2.4.1-10_arm64.deb ------------------------------- new Debian package, version 2.0. size 395954 bytes: control archive=928 bytes. 922 bytes, 20 lines control 233 bytes, 3 lines md5sums 38 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libbpp-seq12 Source: libbpp-seq Version: 2.4.1-10 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1446 Depends: libbpp-core4 (>= 2.4.1), libc6 (>= 2.29), libgcc-s1 (>= 4.2), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the Bio++ classes for sequence analysis. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/libbpp-seq.so.12 -> libbpp-seq.so.12.0.0 -rw-r--r-- root/root 1443864 2023-08-13 11:21 ./usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/ -rw-r--r-- root/root 847 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/changelog.Debian.gz -rw-r--r-- root/root 23163 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 505740 Build-Time: 553 Distribution: mantic-proposed Host Architecture: arm64 Install-Time: 44 Job: libbpp-seq_2.4.1-10.dsc Machine Architecture: arm64 Package: libbpp-seq Package-Time: 599 Source-Version: 2.4.1-10 Space: 505740 Status: successful Version: 2.4.1-10 -------------------------------------------------------------------------------- Finished at 2023-08-13T17:24:09Z Build needed 00:09:59, 505740k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=arm64 PACKAGEBUILD-26502252 Scanning for processes to kill in build PACKAGEBUILD-26502252