https://launchpad.net/ubuntu/+source/libbpp-seq/2.4.1-10/+build/26502254 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-019 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:10:11 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 13 Aug 17:11:35 ntpdate[3119]: adjust time server 10.211.37.1 offset 0.001374 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26502254 --image-type chroot /home/buildd/filecache-default/7984b9498478de1d58b749dc057a3cf5e3226d68 Creating target for build PACKAGEBUILD-26502254 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26502254 Starting target for build PACKAGEBUILD-26502254 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26502254 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26502254 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26502254 Updating target for build PACKAGEBUILD-26502254 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el Packages [1341 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe ppc64el Packages [14.9 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5971 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el Packages [91.7 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [32.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el Packages [480 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [157 kB] Fetched 24.0 MB in 6s (4119 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libtsan2 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 148 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 156 MB of archives. After this operation, 166 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcrypt-dev ppc64el 1:4.4.36-2 [144 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc6-dev ppc64el 2.38-1ubuntu3 [2084 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc-dev-bin ppc64el 2.38-1ubuntu3 [21.0 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcrypt1 ppc64el 1:4.4.36-2 [108 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el linux-libc-dev ppc64el 6.3.0-7.7 [1533 kB] Get:6 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc6 ppc64el 2.38-1ubuntu3 [3244 kB] Get:7 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc-bin ppc64el 2.38-1ubuntu3 [745 kB] Get:8 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-2ubuntu1 [42.9 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgcc-s1 ppc64el 13.2.0-2ubuntu1 [38.5 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main ppc64el base-files ppc64el 13ubuntu1 [74.2 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main ppc64el debianutils ppc64el 5.8-1 [104 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main ppc64el bash ppc64el 5.2.15-2ubuntu1 [956 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main ppc64el bsdutils ppc64el 1:2.38.1-5ubuntu2 [95.5 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main ppc64el coreutils ppc64el 9.1-1ubuntu2 [1508 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main ppc64el liblzma5 ppc64el 5.4.1-0.2 [154 kB] Get:16 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libstdc++6 ppc64el 13.2.0-2ubuntu1 [871 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-1ubuntu2 [384 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main ppc64el libgcrypt20 ppc64el 1.10.2-2ubuntu1 [740 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main ppc64el libacl1 ppc64el 2.3.1-3 [20.4 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main ppc64el libapparmor1 ppc64el 3.0.8-1ubuntu4 [50.8 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main ppc64el libaudit-common all 1:3.1.1-1 [5426 B] Get:22 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcap-ng0 ppc64el 0.8.3-1build2 [16.0 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main ppc64el libaudit1 ppc64el 1:3.1.1-1 [51.6 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main ppc64el libblkid1 ppc64el 2.38.1-5ubuntu2 [135 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcap2 ppc64el 1:2.66-4ubuntu1 [34.4 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main ppc64el libip4tc2 ppc64el 1.8.9-2ubuntu2 [25.5 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main ppc64el libperl5.36 ppc64el 5.36.0-7ubuntu1 [4849 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main ppc64el perl ppc64el 5.36.0-7ubuntu1 [235 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main ppc64el perl-base ppc64el 5.36.0-7ubuntu1 [1858 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main ppc64el perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:31 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg2-2 [853 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main ppc64el zlib1g ppc64el 1:1.2.13.dfsg-1ubuntu5 [71.4 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main ppc64el debconf all 1.5.82 [125 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libssl3 ppc64el 3.0.10-1ubuntu2 [2148 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main ppc64el libkmod2 ppc64el 30+20230519-1ubuntu2 [62.1 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpcre2-8-0 ppc64el 10.42-2 [257 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main ppc64el libselinux1 ppc64el 3.5-1 [97.2 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmount1 ppc64el 2.38.1-5ubuntu2 [145 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam0g ppc64el 1.5.2-6ubuntu1 [73.4 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main ppc64el libseccomp2 ppc64el 2.5.4-1ubuntu3 [61.6 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main ppc64el systemd-sysv ppc64el 253.5-1ubuntu1 [11.5 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main ppc64el systemd ppc64el 253.5-1ubuntu1 [3279 kB] Get:43 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsystemd-shared ppc64el 253.5-1ubuntu1 [2070 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main ppc64el systemd-dev all 253.5-1ubuntu1 [78.5 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main ppc64el libargon2-1 ppc64el 0~20190702+dfsg-3 [21.8 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main ppc64el libudev1 ppc64el 253.5-1ubuntu1 [182 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-2ubuntu1 [179 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main ppc64el libuuid1 ppc64el 2.38.1-5ubuntu2 [36.4 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcryptsetup12 ppc64el 2:2.6.1-4ubuntu1 [343 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main ppc64el libfdisk1 ppc64el 2.38.1-5ubuntu2 [167 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main ppc64el libp11-kit0 ppc64el 0.24.1-2ubuntu1 [258 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main ppc64el mount ppc64el 2.38.1-5ubuntu2 [119 kB] Get:53 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsystemd0 ppc64el 253.5-1ubuntu1 [484 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main ppc64el libapt-pkg6.0 ppc64el 2.7.3 [1007 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main ppc64el tar ppc64el 1.34+dfsg-1.2ubuntu1 [354 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main ppc64el dpkg ppc64el 1.21.22ubuntu1 [1469 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main ppc64el dash ppc64el 0.5.12-6ubuntu1 [107 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main ppc64el diffutils ppc64el 1:3.8-4 [196 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main ppc64el findutils ppc64el 4.9.0-5 [328 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main ppc64el grep ppc64el 3.11-2 [172 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main ppc64el hostname ppc64el 3.23+nmu1ubuntu1 [11.1 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main ppc64el libncurses6 ppc64el 6.4+20230625-2 [145 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main ppc64el libncursesw6 ppc64el 6.4+20230625-2 [182 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main ppc64el libtinfo6 ppc64el 6.4+20230625-2 [131 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main ppc64el ncurses-bin ppc64el 6.4+20230625-2 [199 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main ppc64el sed ppc64el 4.9-1 [208 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsmartcols1 ppc64el 2.38.1-5ubuntu2 [71.4 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main ppc64el util-linux-extra ppc64el 2.38.1-5ubuntu2 [88.9 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main ppc64el util-linux ppc64el 2.38.1-5ubuntu2 [1140 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main ppc64el init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main ppc64el ncurses-base all 6.4+20230625-2 [24.5 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main ppc64el sysvinit-utils ppc64el 3.07-1ubuntu1 [34.8 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main ppc64el lsb-base all 11.6 [4606 B] Get:74 http://ftpmaster.internal/ubuntu mantic/main ppc64el adduser all 3.137ubuntu1 [101 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpgv ppc64el 2.2.40-1.1ubuntu1 [174 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-2ubuntu3 [275 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main ppc64el libnettle8 ppc64el 3.9.1-2 [222 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main ppc64el libhogweed6 ppc64el 3.9.1-2 [206 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main ppc64el libidn2-0 ppc64el 2.3.4-1 [111 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main ppc64el libtasn1-6 ppc64el 4.19.0-3 [54.9 kB] Get:81 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgnutls30 ppc64el 3.8.1-3ubuntu1 [1044 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main ppc64el apt ppc64el 2.7.3 [1389 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam-modules-bin ppc64el 1.5.2-6ubuntu1 [51.9 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam-modules ppc64el 1.5.2-6ubuntu1 [323 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main ppc64el logsave ppc64el 1.47.0-2ubuntu1 [22.2 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main ppc64el libext2fs2 ppc64el 1.47.0-2ubuntu1 [264 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main ppc64el e2fsprogs ppc64el 1.47.0-2ubuntu1 [656 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main ppc64el init ppc64el 1.65.2ubuntu1 [5510 B] Get:89 http://ftpmaster.internal/ubuntu mantic/main ppc64el libattr1 ppc64el 1:2.5.1-4 [13.2 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdebconfclient0 ppc64el 0.270ubuntu1 [10.9 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmd0 ppc64el 1.1.0-1 [30.2 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsemanage-common all 3.5-1 [9890 B] Get:94 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsepol2 ppc64el 3.5-1 [383 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsemanage2 ppc64el 3.5-1 [113 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main ppc64el usrmerge all 35ubuntu1 [58.2 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcom-err2 ppc64el 1.47.0-2ubuntu1 [22.2 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main ppc64el libproc2-0 ppc64el 2:4.0.3-1ubuntu1 [62.1 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main ppc64el libss2 ppc64el 1.47.0-2ubuntu1 [17.5 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main ppc64el mawk ppc64el 1.3.4.20230730-1 [136 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main ppc64el procps ppc64el 2:4.0.3-1ubuntu1 [632 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main ppc64el sensible-utils all 0.0.20 [19.6 kB] Get:103 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el openssl ppc64el 3.0.10-1ubuntu2 [1207 kB] Get:104 http://ftpmaster.internal/ubuntu mantic/main ppc64el ca-certificates all 20230311ubuntu1 [152 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-2 [181 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main ppc64el libkrb5-3 ppc64el 1.20.1-2 [425 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main ppc64el libkrb5support0 ppc64el 1.20.1-2 [37.2 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main ppc64el libk5crypto3 ppc64el 1.20.1-2 [106 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main ppc64el readline-common all 8.2-1.3 [55.7 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main ppc64el libreadline8 ppc64el 8.2-1.3 [175 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsqlite3-0 ppc64el 3.42.0-1 [761 kB] Get:112 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el tzdata all 2023c-9ubuntu1 [270 kB] Get:113 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpng16-16 ppc64el 1.6.40-1 [237 kB] Get:114 http://ftpmaster.internal/ubuntu mantic/main ppc64el xz-utils ppc64el 5.4.1-0.2 [277 kB] Get:115 http://ftpmaster.internal/ubuntu mantic/main ppc64el advancecomp ppc64el 2.5-1 [235 kB] Get:116 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libctf0 ppc64el 2.41-4ubuntu1 [111 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libctf-nobfd0 ppc64el 2.41-4ubuntu1 [111 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.41-4ubuntu1 [2498 kB] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libbinutils ppc64el 2.41-4ubuntu1 [693 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el binutils ppc64el 2.41-4ubuntu1 [3076 B] Get:121 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el binutils-common ppc64el 2.41-4ubuntu1 [228 kB] Get:122 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libsframe1 ppc64el 2.41-4ubuntu1 [15.9 kB] Get:123 http://ftpmaster.internal/ubuntu mantic/main ppc64el libisl23 ppc64el 0.26-3 [864 kB] Get:124 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmpfr6 ppc64el 4.2.0-1 [343 kB] Get:125 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cpp-13 ppc64el 13.2.0-2ubuntu1 [9725 kB] Get:126 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el g++ ppc64el 4:13.2.0-1ubuntu1 [1110 B] Get:127 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc ppc64el 4:13.2.0-1ubuntu1 [5206 B] Get:128 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cpp ppc64el 4:13.2.0-1ubuntu1 [28.9 kB] Get:129 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libcc1-0 ppc64el 13.2.0-2ubuntu1 [48.7 kB] Get:130 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgomp1 ppc64el 13.2.0-2ubuntu1 [155 kB] Get:131 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libitm1 ppc64el 13.2.0-2ubuntu1 [32.6 kB] Get:132 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libatomic1 ppc64el 13.2.0-2ubuntu1 [10.6 kB] Get:133 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libasan8 ppc64el 13.2.0-2ubuntu1 [2837 kB] Get:134 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el liblsan0 ppc64el 13.2.0-2ubuntu1 [1232 kB] Get:135 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libubsan1 ppc64el 13.2.0-2ubuntu1 [1133 kB] Get:136 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libquadmath0 ppc64el 13.2.0-2ubuntu1 [156 kB] Get:137 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el g++-12 ppc64el 12.3.0-7ubuntu2 [11.4 MB] Get:138 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-12 ppc64el 12.3.0-7ubuntu2 [19.8 MB] Get:139 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cpp-12 ppc64el 12.3.0-7ubuntu2 [10.1 MB] Get:140 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el libstdc++-12-dev ppc64el 12.3.0-7ubuntu2 [2302 kB] Get:141 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgcc-12-dev ppc64el 12.3.0-7ubuntu2 [1512 kB] Get:142 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libtsan2 ppc64el 13.2.0-2ubuntu1 [2656 kB] Get:143 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-12-base ppc64el 12.3.0-7ubuntu2 [43.2 kB] Get:144 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgcc-13-dev ppc64el 13.2.0-2ubuntu1 [1578 kB] Get:145 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-13 ppc64el 13.2.0-2ubuntu1 [19.5 MB] Get:146 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libstdc++-13-dev ppc64el 13.2.0-2ubuntu1 [2471 kB] Get:147 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el g++-13 ppc64el 13.2.0-2ubuntu1 [11.2 MB] Get:148 http://ftpmaster.internal/ubuntu mantic/main ppc64el dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:149 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:150 http://ftpmaster.internal/ubuntu mantic/main ppc64el lto-disabled-list all 42 [12.4 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] Get:152 http://ftpmaster.internal/ubuntu mantic/main ppc64el libfakeroot ppc64el 1.32.1-1 [33.9 kB] Get:153 http://ftpmaster.internal/ubuntu mantic/main ppc64el fakeroot ppc64el 1.32.1-1 [62.1 kB] Get:154 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpg ppc64el 2.2.40-1.1ubuntu1 [646 kB] Get:155 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpgconf ppc64el 2.2.40-1.1ubuntu1 [106 kB] Get:156 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpg-agent ppc64el 2.2.40-1.1ubuntu1 [253 kB] Get:157 http://ftpmaster.internal/ubuntu mantic/main ppc64el pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 156 MB in 2min 24s (1081 kB/s) (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.36-2_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.36-2) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Replacing files in old package libc6:ppc64el (2.36-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc-dev-bin (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.36-2_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.36-2) over (1:4.4.33-1) ... Setting up libcrypt1:ppc64el (1:4.4.36-2) ... (Reading database ... 13037 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.3.0-7.7_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (6.3.0-7.7) over (5.19.0-21.21) ... Preparing to unpack .../libc6_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc6:ppc64el (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Setting up libc6:ppc64el (2.38-1ubuntu3) ... (Reading database ... 13041 files and directories currently installed.) Preparing to unpack .../libc-bin_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc-bin (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Setting up libc-bin (2.38-1ubuntu3) ... Selecting previously unselected package gcc-13-base:ppc64el. (Reading database ... 13043 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking gcc-13-base:ppc64el (13.2.0-2ubuntu1) ... Setting up gcc-13-base:ppc64el (13.2.0-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libgcc-s1:ppc64el (13.2.0-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu1_ppc64el.deb ... Unpacking base-files (13ubuntu1) over (12.3ubuntu1) ... Setting up base-files (13ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../debianutils_5.8-1_ppc64el.deb ... Unpacking debianutils (5.8-1) over (5.7-0.4) ... Setting up debianutils (5.8-1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_ppc64el.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-5ubuntu2_ppc64el.deb ... Unpacking bsdutils (1:2.38.1-5ubuntu2) over (1:2.38.1-4ubuntu1) ... Setting up bsdutils (1:2.38.1-5ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_ppc64el.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.2_ppc64el.deb ... Unpacking liblzma5:ppc64el (5.4.1-0.2) over (5.2.9-0.0) ... Setting up liblzma5:ppc64el (5.4.1-0.2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libstdc++6_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libstdc++6:ppc64el (13.2.0-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-1ubuntu2_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.5.5+dfsg2-1ubuntu2) over (1.5.2+dfsg-1) ... Setting up libzstd1:ppc64el (1.5.5+dfsg2-1ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.2-2ubuntu1_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.10.2-2ubuntu1) over (1.10.1-2ubuntu1) ... Setting up libgcrypt20:ppc64el (1.10.2-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-3_ppc64el.deb ... Unpacking libacl1:ppc64el (2.3.1-3) over (2.3.1-2) ... Setting up libacl1:ppc64el (2.3.1-3) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.0.8-1ubuntu4_ppc64el.deb ... Unpacking libapparmor1:ppc64el (3.0.8-1ubuntu4) over (3.0.8-1ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a3.1.1-1_all.deb ... Unpacking libaudit-common (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit-common (1:3.1.1-1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1build2_ppc64el.deb ... Unpacking libcap-ng0:ppc64el (0.8.3-1build2) over (0.8.3-1build1) ... Setting up libcap-ng0:ppc64el (0.8.3-1build2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.1-1_ppc64el.deb ... Unpacking libaudit1:ppc64el (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit1:ppc64el (1:3.1.1-1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libblkid1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libblkid1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libblkid1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4ubuntu1_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.66-4ubuntu1) over (1:2.44-1build3) ... Setting up libcap2:ppc64el (1:2.66-4ubuntu1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.9-2ubuntu2_ppc64el.deb ... Unpacking libip4tc2:ppc64el (1.8.9-2ubuntu2) over (1.8.7-1ubuntu7) ... Preparing to unpack .../libperl5.36_5.36.0-7ubuntu1_ppc64el.deb ... Unpacking libperl5.36:ppc64el (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl_5.36.0-7ubuntu1_ppc64el.deb ... Unpacking perl (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-7ubuntu1_ppc64el.deb ... Unpacking perl-base (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Setting up perl-base (5.36.0-7ubuntu1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7ubuntu1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-2_ppc64el.deb ... Unpacking libdb5.3:ppc64el (5.3.28+dfsg2-2) over (5.3.28+dfsg1-0.10) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg2-2) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu5_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.2.13.dfsg-1ubuntu5) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:ppc64el (1:1.2.13.dfsg-1ubuntu5) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../debconf_1.5.82_all.deb ... Unpacking debconf (1.5.82) over (1.5.79ubuntu1) ... Setting up debconf (1.5.82) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.10-1ubuntu2_ppc64el.deb ... Unpacking libssl3:ppc64el (3.0.10-1ubuntu2) over (3.0.5-2ubuntu2) ... Preparing to unpack .../libkmod2_30+20230519-1ubuntu2_ppc64el.deb ... Unpacking libkmod2:ppc64el (30+20230519-1ubuntu2) over (30+20220905-1ubuntu1) ... Preparing to unpack .../libpcre2-8-0_10.42-2_ppc64el.deb ... Unpacking libpcre2-8-0:ppc64el (10.42-2) over (10.40-1ubuntu1) ... Setting up libpcre2-8-0:ppc64el (10.42-2) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1_ppc64el.deb ... Unpacking libselinux1:ppc64el (3.5-1) over (3.4-1build1) ... Setting up libselinux1:ppc64el (3.5-1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libmount1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libmount1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-6ubuntu1_ppc64el.deb ... Unpacking libpam0g:ppc64el (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam0g:ppc64el (1.5.2-6ubuntu1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1ubuntu3_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.5.4-1ubuntu3) over (2.5.4-1ubuntu2) ... Setting up libseccomp2:ppc64el (2.5.4-1ubuntu3) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../systemd-sysv_253.5-1ubuntu1_ppc64el.deb ... Unpacking systemd-sysv (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libssl3:ppc64el (3.0.10-1ubuntu2) ... (Reading database ... 13051 files and directories currently installed.) Preparing to unpack .../systemd_253.5-1ubuntu1_ppc64el.deb ... Unpacking systemd (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd-shared_253.5-1ubuntu1_ppc64el.deb ... Unpacking libsystemd-shared:ppc64el (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Selecting previously unselected package systemd-dev. Preparing to unpack .../systemd-dev_253.5-1ubuntu1_all.deb ... Unpacking systemd-dev (253.5-1ubuntu1) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-3_ppc64el.deb ... Unpacking libargon2-1:ppc64el (0~20190702+dfsg-3) over (0~20171227-0.3) ... Preparing to unpack .../libudev1_253.5-1ubuntu1_ppc64el.deb ... Unpacking libudev1:ppc64el (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libudev1:ppc64el (253.5-1ubuntu1) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-2ubuntu1_ppc64el.deb ... Unpacking libdevmapper1.02.1:ppc64el (2:1.02.185-2ubuntu1) over (2:1.02.185-1ubuntu1) ... Preparing to unpack .../libuuid1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libuuid1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libuuid1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.6.1-4ubuntu1_ppc64el.deb ... Unpacking libcryptsetup12:ppc64el (2:2.6.1-4ubuntu1) over (2:2.5.0-6ubuntu3) ... Preparing to unpack .../libfdisk1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libfdisk1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libp11-kit0_0.24.1-2ubuntu1_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.24.1-2ubuntu1) over (0.24.1-1ubuntu2) ... Setting up libp11-kit0:ppc64el (0.24.1-2ubuntu1) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking mount (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libsystemd0_253.5-1ubuntu1_ppc64el.deb ... Unpacking libsystemd0:ppc64el (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libsystemd0:ppc64el (253.5-1ubuntu1) ... (Reading database ... 13086 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.3_ppc64el.deb ... Unpacking libapt-pkg6.0:ppc64el (2.7.3) over (2.5.4) ... Setting up libapt-pkg6.0:ppc64el (2.7.3) ... (Reading database ... 13086 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.2ubuntu1_ppc64el.deb ... Unpacking tar (1.34+dfsg-1.2ubuntu1) over (1.34+dfsg-1.1) ... Setting up tar (1.34+dfsg-1.2ubuntu1) ... (Reading database ... 13086 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.22ubuntu1_ppc64el.deb ... Unpacking dpkg (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.22ubuntu1) ... (Reading database ... 13089 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6ubuntu1_ppc64el.deb ... Unpacking dash (0.5.12-6ubuntu1) over (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... Setting up dash (0.5.12-6ubuntu1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-4_ppc64el.deb ... Unpacking diffutils (1:3.8-4) over (1:3.8-1) ... Setting up diffutils (1:3.8-4) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_ppc64el.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-3ubuntu1) ... Setting up findutils (4.9.0-5) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../grep_3.11-2_ppc64el.deb ... Unpacking grep (3.11-2) over (3.8-3) ... Setting up grep (3.11-2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu1ubuntu1_ppc64el.deb ... Unpacking hostname (3.23+nmu1ubuntu1) over (3.23ubuntu2) ... Setting up hostname (3.23+nmu1ubuntu1) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4+20230625-2_ppc64el.deb ... Unpacking libncurses6:ppc64el (6.4+20230625-2) over (6.3+20220423-2) ... Preparing to unpack .../libncursesw6_6.4+20230625-2_ppc64el.deb ... Unpacking libncursesw6:ppc64el (6.4+20230625-2) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.4+20230625-2_ppc64el.deb ... Unpacking libtinfo6:ppc64el (6.4+20230625-2) over (6.3+20220423-2) ... Setting up libtinfo6:ppc64el (6.4+20230625-2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20230625-2_ppc64el.deb ... Unpacking ncurses-bin (6.4+20230625-2) over (6.3+20220423-2) ... Setting up ncurses-bin (6.4+20230625-2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_ppc64el.deb ... Unpacking sed (4.9-1) over (4.8-1ubuntu2) ... Setting up sed (4.9-1) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libsmartcols1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libsmartcols1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking util-linux-extra (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux-extra (2.38.1-5ubuntu2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking util-linux (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux (2.38.1-5ubuntu2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2ubuntu1_all.deb ... Unpacking init-system-helpers (1.65.2ubuntu1) over (1.65.2) ... Setting up init-system-helpers (1.65.2ubuntu1) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20230625-2_all.deb ... Unpacking ncurses-base (6.4+20230625-2) over (6.3+20220423-2) ... Setting up ncurses-base (6.4+20230625-2) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.2ubuntu1) ... Preparing to unpack .../sysvinit-utils_3.07-1ubuntu1_ppc64el.deb ... Unpacking sysvinit-utils (3.07-1ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.07-1ubuntu1) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../adduser_3.137ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.137ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpgv (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Setting up gpgv (2.2.40-1.1ubuntu1) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2ubuntu3_ppc64el.deb ... Unpacking libgmp10:ppc64el (2:6.3.0+dfsg-2ubuntu3) over (2:6.2.1+dfsg1-1.1ubuntu1) ... Setting up libgmp10:ppc64el (2:6.3.0+dfsg-2ubuntu3) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2_ppc64el.deb ... Unpacking libnettle8:ppc64el (3.9.1-2) over (3.8.1-2) ... Setting up libnettle8:ppc64el (3.9.1-2) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2_ppc64el.deb ... Unpacking libhogweed6:ppc64el (3.9.1-2) over (3.8.1-2) ... Setting up libhogweed6:ppc64el (3.9.1-2) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.4-1_ppc64el.deb ... Unpacking libidn2-0:ppc64el (2.3.4-1) over (2.3.3-1build1) ... Setting up libidn2-0:ppc64el (2.3.4-1) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3_ppc64el.deb ... Unpacking libtasn1-6:ppc64el (4.19.0-3) over (4.19.0-2) ... Setting up libtasn1-6:ppc64el (4.19.0-3) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.1-3ubuntu1_ppc64el.deb ... Unpacking libgnutls30:ppc64el (3.8.1-3ubuntu1) over (3.7.7-2ubuntu2) ... Setting up libgnutls30:ppc64el (3.8.1-3ubuntu1) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.3_ppc64el.deb ... Unpacking apt (2.7.3) over (2.5.4) ... Setting up apt (2.7.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-6ubuntu1_ppc64el.deb ... Unpacking libpam-modules-bin (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules-bin (1.5.2-6ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-6ubuntu1_ppc64el.deb ... Unpacking libpam-modules:ppc64el (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules:ppc64el (1.5.2-6ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking logsave (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../libext2fs2_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking libext2fs2:ppc64el (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Setting up libext2fs2:ppc64el (1.47.0-2ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking e2fsprogs (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Setting up libargon2-1:ppc64el (0~20190702+dfsg-3) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.185-2ubuntu1) ... Setting up libcryptsetup12:ppc64el (2:2.6.1-4ubuntu1) ... Setting up libfdisk1:ppc64el (2.38.1-5ubuntu2) ... Setting up libkmod2:ppc64el (30+20230519-1ubuntu2) ... Setting up libapparmor1:ppc64el (3.0.8-1ubuntu4) ... Setting up libip4tc2:ppc64el (1.8.9-2ubuntu2) ... Setting up libsystemd-shared:ppc64el (253.5-1ubuntu1) ... Setting up systemd-dev (253.5-1ubuntu1) ... Setting up mount (2.38.1-5ubuntu2) ... Setting up systemd (253.5-1ubuntu1) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (253.5-1ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../init_1.65.2ubuntu1_ppc64el.deb ... Unpacking init (1.65.2ubuntu1) over (1.65.2) ... Preparing to unpack .../libattr1_1%3a2.5.1-4_ppc64el.deb ... Unpacking libattr1:ppc64el (1:2.5.1-4) over (1:2.5.1-3) ... Setting up libattr1:ppc64el (1:2.5.1-4) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270ubuntu1_ppc64el.deb ... Unpacking libdebconfclient0:ppc64el (0.270ubuntu1) over (0.264ubuntu1) ... Setting up libdebconfclient0:ppc64el (0.270ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-1_ppc64el.deb ... Unpacking libmd0:ppc64el (1.1.0-1) over (1.0.4-2) ... Setting up libmd0:ppc64el (1.1.0-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-6ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-runtime (1.5.2-6ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1build1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-1_ppc64el.deb ... Unpacking libsepol2:ppc64el (3.5-1) over (3.4-2) ... Setting up libsepol2:ppc64el (3.5-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1_ppc64el.deb ... Unpacking libsemanage2:ppc64el (3.5-1) over (3.4-1build1) ... Setting up libsemanage2:ppc64el (3.5-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../usrmerge_35ubuntu1_all.deb ... Unpacking usrmerge (35ubuntu1) over (33ubuntu1) ... Setting up usrmerge (35ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking libcom-err2:ppc64el (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Selecting previously unselected package libproc2-0:ppc64el. Preparing to unpack .../01-libproc2-0_2%3a4.0.3-1ubuntu1_ppc64el.deb ... Unpacking libproc2-0:ppc64el (2:4.0.3-1ubuntu1) ... Preparing to unpack .../02-libss2_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking libss2:ppc64el (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../03-mawk_1.3.4.20230730-1_ppc64el.deb ... Unpacking mawk (1.3.4.20230730-1) over (1.3.4.20200120-3.1) ... Preparing to unpack .../04-procps_2%3a4.0.3-1ubuntu1_ppc64el.deb ... Unpacking procps (2:4.0.3-1ubuntu1) over (2:3.3.17-7ubuntu1) ... Preparing to unpack .../05-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) over (0.0.17) ... Preparing to unpack .../06-openssl_3.0.10-1ubuntu2_ppc64el.deb ... Unpacking openssl (3.0.10-1ubuntu2) over (3.0.5-2ubuntu2) ... Preparing to unpack .../07-ca-certificates_20230311ubuntu1_all.deb ... Unpacking ca-certificates (20230311ubuntu1) over (20211016ubuntu1) ... Preparing to unpack .../08-libgssapi-krb5-2_1.20.1-2_ppc64el.deb ... Unpacking libgssapi-krb5-2:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../09-libkrb5-3_1.20.1-2_ppc64el.deb ... Unpacking libkrb5-3:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../10-libkrb5support0_1.20.1-2_ppc64el.deb ... Unpacking libkrb5support0:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../11-libk5crypto3_1.20.1-2_ppc64el.deb ... Unpacking libk5crypto3:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../12-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../13-libreadline8_8.2-1.3_ppc64el.deb ... Unpacking libreadline8:ppc64el (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../14-libsqlite3-0_3.42.0-1_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.42.0-1) over (3.40.0-1) ... Preparing to unpack .../15-tzdata_2023c-9ubuntu1_all.deb ... Unpacking tzdata (2023c-9ubuntu1) over (2022g-1ubuntu1) ... Preparing to unpack .../16-libpng16-16_1.6.40-1_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.40-1) over (1.6.39-2) ... Preparing to unpack .../17-xz-utils_5.4.1-0.2_ppc64el.deb ... Unpacking xz-utils (5.4.1-0.2) over (5.2.9-0.0) ... Preparing to unpack .../18-advancecomp_2.5-1_ppc64el.deb ... Unpacking advancecomp (2.5-1) over (2.4-1) ... Preparing to unpack .../19-libctf0_2.41-4ubuntu1_ppc64el.deb ... Unpacking libctf0:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../20-libctf-nobfd0_2.41-4ubuntu1_ppc64el.deb ... Unpacking libctf-nobfd0:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../21-binutils-powerpc64le-linux-gnu_2.41-4ubuntu1_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../22-libbinutils_2.41-4ubuntu1_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../23-binutils_2.41-4ubuntu1_ppc64el.deb ... Unpacking binutils (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../24-binutils-common_2.41-4ubuntu1_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Selecting previously unselected package libsframe1:ppc64el. Preparing to unpack .../25-libsframe1_2.41-4ubuntu1_ppc64el.deb ... Unpacking libsframe1:ppc64el (2.41-4ubuntu1) ... Preparing to unpack .../26-libisl23_0.26-3_ppc64el.deb ... Unpacking libisl23:ppc64el (0.26-3) over (0.25-1) ... Preparing to unpack .../27-libmpfr6_4.2.0-1_ppc64el.deb ... Unpacking libmpfr6:ppc64el (4.2.0-1) over (4.1.0-3build3) ... Selecting previously unselected package cpp-13. Preparing to unpack .../28-cpp-13_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking cpp-13 (13.2.0-2ubuntu1) ... Preparing to unpack .../29-g++_4%3a13.2.0-1ubuntu1_ppc64el.deb ... Unpacking g++ (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../30-gcc_4%3a13.2.0-1ubuntu1_ppc64el.deb ... Unpacking gcc (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../31-cpp_4%3a13.2.0-1ubuntu1_ppc64el.deb ... Unpacking cpp (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../32-libcc1-0_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../33-libgomp1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../34-libitm1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../35-libatomic1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../36-libasan8_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libasan8:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../37-liblsan0_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../38-libubsan1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libubsan1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../39-libquadmath0_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libquadmath0:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../40-g++-12_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking g++-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../41-gcc-12_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking gcc-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../42-cpp-12_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking cpp-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../43-libstdc++-12-dev_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking libstdc++-12-dev:ppc64el (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../44-libgcc-12-dev_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking libgcc-12-dev:ppc64el (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../45-libtsan2_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libtsan2:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../46-gcc-12-base_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking gcc-12-base:ppc64el (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Selecting previously unselected package libgcc-13-dev:ppc64el. Preparing to unpack .../47-libgcc-13-dev_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libgcc-13-dev:ppc64el (13.2.0-2ubuntu1) ... Selecting previously unselected package gcc-13. Preparing to unpack .../48-gcc-13_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking gcc-13 (13.2.0-2ubuntu1) ... Selecting previously unselected package libstdc++-13-dev:ppc64el. Preparing to unpack .../49-libstdc++-13-dev_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libstdc++-13-dev:ppc64el (13.2.0-2ubuntu1) ... Selecting previously unselected package g++-13. Preparing to unpack .../50-g++-13_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking g++-13 (13.2.0-2ubuntu1) ... Preparing to unpack .../51-dpkg-dev_1.21.22ubuntu1_all.deb ... Unpacking dpkg-dev (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../52-libdpkg-perl_1.21.22ubuntu1_all.deb ... Unpacking libdpkg-perl (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../53-lto-disabled-list_42_all.deb ... Unpacking lto-disabled-list (42) over (37) ... Preparing to unpack .../54-build-essential_12.10ubuntu1_ppc64el.deb ... Unpacking build-essential (12.10ubuntu1) over (12.9ubuntu3) ... Preparing to unpack .../55-libfakeroot_1.32.1-1_ppc64el.deb ... Unpacking libfakeroot:ppc64el (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../56-fakeroot_1.32.1-1_ppc64el.deb ... Unpacking fakeroot (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../57-gpg_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpg (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../58-gpgconf_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpgconf (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../59-gpg-agent_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpg-agent (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../60-pkgbinarymangler_153_all.deb ... Unpacking pkgbinarymangler (153) over (149) ... Setting up lsb-base (11.6) ... Setting up lto-disabled-list (42) ... Setting up init (1.65.2ubuntu1) ... Setting up libsqlite3-0:ppc64el (3.42.0-1) ... Setting up binutils-common:ppc64el (2.41-4ubuntu1) ... Setting up linux-libc-dev:ppc64el (6.3.0-7.7) ... Setting up libctf-nobfd0:ppc64el (2.41-4ubuntu1) ... Setting up libcom-err2:ppc64el (1.47.0-2ubuntu1) ... Setting up libgomp1:ppc64el (13.2.0-2ubuntu1) ... Setting up libsframe1:ppc64el (2.41-4ubuntu1) ... Setting up libfakeroot:ppc64el (1.32.1-1) ... Setting up libkrb5support0:ppc64el (1.20.1-2) ... Setting up gcc-12-base:ppc64el (12.3.0-7ubuntu2) ... Setting up tzdata (2023c-9ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Aug 13 17:14:27 UTC 2023. Universal Time is now: Sun Aug 13 17:14:27 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.32.1-1) ... Setting up perl-modules-5.36 (5.36.0-7ubuntu1) ... Setting up libmpfr6:ppc64el (4.2.0-1) ... Setting up libncurses6:ppc64el (6.4+20230625-2) ... Setting up xz-utils (5.4.1-0.2) ... Setting up libquadmath0:ppc64el (13.2.0-2ubuntu1) ... Setting up libproc2-0:ppc64el (2:4.0.3-1ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.40-1) ... Setting up libatomic1:ppc64el (13.2.0-2ubuntu1) ... Setting up libss2:ppc64el (1.47.0-2ubuntu1) ... Setting up libncursesw6:ppc64el (6.4+20230625-2) ... Setting up libk5crypto3:ppc64el (1.20.1-2) ... Setting up logsave (1.47.0-2ubuntu1) ... Setting up libubsan1:ppc64el (13.2.0-2ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.20) ... Setting up libcrypt-dev:ppc64el (1:4.4.36-2) ... Setting up libasan8:ppc64el (13.2.0-2ubuntu1) ... Setting up procps (2:4.0.3-1ubuntu1) ... Setting up mawk (1.3.4.20230730-1) ... Setting up libkrb5-3:ppc64el (1.20.1-2) ... Setting up libtsan2:ppc64el (13.2.0-2ubuntu1) ... Setting up libbinutils:ppc64el (2.41-4ubuntu1) ... Setting up libisl23:ppc64el (0.26-3) ... Setting up libc-dev-bin (2.38-1ubuntu3) ... Setting up openssl (3.0.10-1ubuntu2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:ppc64el (13.2.0-2ubuntu1) ... Setting up libperl5.36:ppc64el (5.36.0-7ubuntu1) ... Setting up liblsan0:ppc64el (13.2.0-2ubuntu1) ... Setting up libitm1:ppc64el (13.2.0-2ubuntu1) ... Setting up libctf0:ppc64el (2.41-4ubuntu1) ... Setting up cpp-12 (12.3.0-7ubuntu2) ... Setting up pkgbinarymangler (153) ... Setting up cpp-13 (13.2.0-2ubuntu1) ... Setting up libreadline8:ppc64el (8.2-1.3) ... Setting up e2fsprogs (1.47.0-2ubuntu1) ... Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7ubuntu1) ... Setting up libgcc-12-dev:ppc64el (12.3.0-7ubuntu2) ... Setting up libgssapi-krb5-2:ppc64el (1.20.1-2) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up libgcc-13-dev:ppc64el (13.2.0-2ubuntu1) ... Setting up cpp (4:13.2.0-1ubuntu1) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:ppc64el (2.38-1ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.41-4ubuntu1) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up libstdc++-13-dev:ppc64el (13.2.0-2ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:ppc64el (12.3.0-7ubuntu2) ... Setting up binutils (2.41-4ubuntu1) ... Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-7ubuntu2) ... Setting up gcc-13 (13.2.0-2ubuntu1) ... Setting up g++-12 (12.3.0-7ubuntu2) ... Setting up g++-13 (13.2.0-2ubuntu1) ... Setting up gcc (4:13.2.0-1ubuntu1) ... Setting up g++ (4:13.2.0-1ubuntu1) ... Setting up build-essential (12.10ubuntu1) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... Processing triggers for debianutils (5.8-1) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26502254 ppc64el mantic-proposed -c chroot:build-PACKAGEBUILD-26502254 --arch=ppc64el --dist=mantic-proposed --nolog libbpp-seq_2.4.1-10.dsc Initiating build PACKAGEBUILD-26502254 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:10:11 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-019.buildd +==============================================================================+ | libbpp-seq 2.4.1-10 (ppc64el) Sun, 13 Aug 2023 17:14:30 +0000 | +==============================================================================+ Package: libbpp-seq Version: 2.4.1-10 Source Version: 2.4.1-10 Distribution: mantic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26502254/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-xMKE6S/resolver-Hcg3X7' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq_2.4.1-10.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-seq-xMKE6S/libbpp-seq-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-xMKE6S' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [391 B] Get:5 copy:/<>/apt_archive ./ Packages [475 B] Fetched 1823 B in 0s (151 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 37.3 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [692 B] Get:2 http://ftpmaster.internal/ubuntu mantic/main ppc64el libelf1 ppc64el 0.189-4 [66.3 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main ppc64el libexpat1 ppc64el 2.5.0-2 [96.2 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main ppc64el libicu72 ppc64el 72.1-3ubuntu2 [11.1 MB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3 [822 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main ppc64el bsdextrautils ppc64el 2.38.1-5ubuntu2 [76.4 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmagic-mgc ppc64el 1:5.44-3 [293 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmagic1 ppc64el 1:5.44-3 [104 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main ppc64el file ppc64el 1:5.44-3 [22.4 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main ppc64el gettext-base ppc64el 0.21-13 [42.3 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main ppc64el groff-base ppc64el 1.23.0-2 [1105 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main ppc64el libnghttp2-14 ppc64el 1.55.1-1 [87.4 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpsl5 ppc64el 0.21.2-1 [60.6 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main ppc64el libuv1 ppc64el 1.44.2-1 [106 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main ppc64el man-db ppc64el 2.11.2-3 [1260 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main ppc64el m4 ppc64el 1.4.19-3 [275 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main ppc64el autoconf all 2.71-3 [339 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:22 http://ftpmaster.internal/ubuntu mantic/main ppc64el autopoint all 0.21-13 [422 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main ppc64el libarchive13 ppc64el 3.6.2-1ubuntu1 [525 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main ppc64el libbrotli1 ppc64el 1.0.9-2build8 [370 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-3 [22.9 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-3 [65.5 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main ppc64el libldap2 ppc64el 2.6.6+dfsg-1~exp1ubuntu1 [228 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:29 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libssh-4 ppc64el 0.10.5-2 [239 kB] Get:30 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libcurl4 ppc64el 8.2.1-1ubuntu2 [401 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main ppc64el libjsoncpp25 ppc64el 1.9.5-6 [86.8 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main ppc64el librhash0 ppc64el 1.4.3-3 [144 kB] Get:33 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cmake-data all 3.27.2-1 [2127 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cmake ppc64el 3.27.2-1 [11.3 MB] Get:35 http://ftpmaster.internal/ubuntu mantic/universe ppc64el d-shlibs all 0.104 [10.2 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main ppc64el libtool all 2.4.7-7 [166 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:41 http://ftpmaster.internal/ubuntu mantic/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:43 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdw1 ppc64el 0.189-4 [292 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main ppc64el gettext ppc64el 0.21-13 [970 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main ppc64el debhelper all 13.11.4ubuntu3 [925 kB] Get:50 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el libbpp-core4 ppc64el 2.4.1-10 [570 kB] Get:51 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el libbpp-core-dev ppc64el 2.4.1-10 [1163 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.3 MB in 17s (2241 kB/s) Selecting previously unselected package libelf1:ppc64el. (Reading database ... 13473 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.189-4_ppc64el.deb ... Unpacking libelf1:ppc64el (0.189-4) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../01-libexpat1_2.5.0-2_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.5.0-2) ... Selecting previously unselected package libicu72:ppc64el. Preparing to unpack .../02-libicu72_72.1-3ubuntu2_ppc64el.deb ... Unpacking libicu72:ppc64el (72.1-3ubuntu2) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking bsdextrautils (2.38.1-5ubuntu2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../06-libmagic1_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.44-3_ppc64el.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-13_ppc64el.deb ... Unpacking gettext-base (0.21-13) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../09-libuchardet0_0.0.7-1build2_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-2_ppc64el.deb ... Unpacking groff-base (1.23.0-2) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../11-libnghttp2-14_1.55.1-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.55.1-1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../12-libpipeline1_1.5.7-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.7-1) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../13-libpsl5_0.21.2-1_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.2-1) ... Selecting previously unselected package libuv1:ppc64el. Preparing to unpack .../14-libuv1_1.44.2-1_ppc64el.deb ... Unpacking libuv1:ppc64el (1.44.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../15-man-db_2.11.2-3_ppc64el.deb ... Unpacking man-db (2.11.2-3) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.19-3_ppc64el.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.21-13_all.deb ... Unpacking autopoint (0.21-13) ... Selecting previously unselected package libarchive13:ppc64el. Preparing to unpack .../21-libarchive13_3.6.2-1ubuntu1_ppc64el.deb ... Unpacking libarchive13:ppc64el (3.6.2-1ubuntu1) ... Selecting previously unselected package libbrotli1:ppc64el. Preparing to unpack .../22-libbrotli1_1.0.9-2build8_ppc64el.deb ... Unpacking libbrotli1:ppc64el (1.0.9-2build8) ... Selecting previously unselected package libsasl2-modules-db:ppc64el. Preparing to unpack .../23-libsasl2-modules-db_2.1.28+dfsg1-3_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg1-3) ... Selecting previously unselected package libsasl2-2:ppc64el. Preparing to unpack .../24-libsasl2-2_2.1.28+dfsg1-3_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.28+dfsg1-3) ... Selecting previously unselected package libldap2:ppc64el. Preparing to unpack .../25-libldap2_2.6.6+dfsg-1~exp1ubuntu1_ppc64el.deb ... Unpacking libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2build4_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:ppc64el. Preparing to unpack .../27-libssh-4_0.10.5-2_ppc64el.deb ... Unpacking libssh-4:ppc64el (0.10.5-2) ... Selecting previously unselected package libcurl4:ppc64el. Preparing to unpack .../28-libcurl4_8.2.1-1ubuntu2_ppc64el.deb ... Unpacking libcurl4:ppc64el (8.2.1-1ubuntu2) ... Selecting previously unselected package libjsoncpp25:ppc64el. Preparing to unpack .../29-libjsoncpp25_1.9.5-6_ppc64el.deb ... Unpacking libjsoncpp25:ppc64el (1.9.5-6) ... Selecting previously unselected package librhash0:ppc64el. Preparing to unpack .../30-librhash0_1.4.3-3_ppc64el.deb ... Unpacking librhash0:ppc64el (1.4.3-3) ... Selecting previously unselected package cmake-data. Preparing to unpack .../31-cmake-data_3.27.2-1_all.deb ... Unpacking cmake-data (3.27.2-1) ... Selecting previously unselected package cmake. Preparing to unpack .../32-cmake_3.27.2-1_ppc64el.deb ... Unpacking cmake (3.27.2-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../33-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.11.4ubuntu3_all.deb ... Unpacking libdebhelper-perl (13.11.4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../38-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../39-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../40-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:ppc64el. Preparing to unpack .../41-libdw1_0.189-4_ppc64el.deb ... Unpacking libdw1:ppc64el (0.189-4) ... Selecting previously unselected package debugedit. Preparing to unpack .../42-debugedit_1%3a5.0-5_ppc64el.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_ppc64el.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-13_ppc64el.deb ... Unpacking gettext (0.21-13) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.11.4ubuntu3_all.deb ... Unpacking debhelper (13.11.4ubuntu3) ... Selecting previously unselected package libbpp-core4:ppc64el. Preparing to unpack .../48-libbpp-core4_2.4.1-10_ppc64el.deb ... Unpacking libbpp-core4:ppc64el (2.4.1-10) ... Selecting previously unselected package libbpp-core-dev:ppc64el. Preparing to unpack .../49-libbpp-core-dev_2.4.1-10_ppc64el.deb ... Unpacking libbpp-core-dev:ppc64el (2.4.1-10) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../50-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:ppc64el (2.5.0-2) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libpsl5:ppc64el (0.21.2-1) ... Setting up libicu72:ppc64el (72.1-3ubuntu2) ... Setting up bsdextrautils (2.38.1-5ubuntu2) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4ubuntu3) ... Setting up libbrotli1:ppc64el (1.0.9-2build8) ... Setting up libnghttp2-14:ppc64el (1.55.1-1) ... Setting up libmagic1:ppc64el (1:5.44-3) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:ppc64el (1.44.2-1) ... Setting up libbpp-core4:ppc64el (2.4.1-10) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up autopoint (0.21-13) ... Setting up libjsoncpp25:ppc64el (1.9.5-6) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-3) ... Setting up libssh-4:ppc64el (0.10.5-2) ... Setting up autoconf (2.71-3) ... Setting up librhash0:ppc64el (1.4.3-3) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up cmake-data (3.27.2-1) ... Setting up libelf1:ppc64el (0.189-4) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3) ... Setting up libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:ppc64el (0.189-4) ... Setting up gettext (0.21-13) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:ppc64el (3.6.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-core-dev:ppc64el (2.4.1-10) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:ppc64el (8.2.1-1ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up cmake (3.27.2-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:10:11 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.41-4ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 libc6-dev_2.38-1ubuntu3 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.41-4ubuntu1 binutils-common_2.41-4ubuntu1 binutils-powerpc64le-linux-gnu_2.41-4ubuntu1 bsdextrautils_2.38.1-5ubuntu2 bsdutils_1:2.38.1-5ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 cmake_3.27.2-1 cmake-data_3.27.2-1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-12_12.3.0-7ubuntu2 cpp-13_13.2.0-2ubuntu1 d-shlibs_0.104 dash_0.5.12-6ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22ubuntu1 dpkg-dev_1.21.22ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc_4:13.2.0-1ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-12-base_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 gcc-13-base_13.2.0-2ubuntu1 gettext_0.21-13 gettext-base_0.21-13 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu4 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1ubuntu1 libargon2-1_0~20190702+dfsg-3 libasan8_13.2.0-2ubuntu1 libassuan0_2.5.5-5 libatomic1_13.2.0-2ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-4ubuntu1 libblkid1_2.38.1-5ubuntu2 libbpp-core-dev_2.4.1-10 libbpp-core4_2.4.1-10 libbrotli1_1.0.9-2build8 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-1ubuntu3 libc-dev-bin_2.38-1ubuntu3 libc6_2.38-1ubuntu3 libc6-dev_2.38-1ubuntu3 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-2ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu1 libctf-nobfd0_2.41-4ubuntu1 libctf0_2.41-4ubuntu1 libcurl4_8.2.1-1ubuntu2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.21.22ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfdisk1_2.38.1-5ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-7ubuntu2 libgcc-13-dev_13.2.0-2ubuntu1 libgcc-s1_13.2.0-2ubuntu1 libgcrypt20_1.10.2-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2ubuntu3 libgnutls30_3.8.1-3ubuntu1 libgomp1_13.2.0-2ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.9.1-2 libicu72_72.1-3ubuntu2 libidn2-0_2.3.4-1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-2ubuntu1 libjansson4_2.14-2 libjson-c5_0.16-2 libjsoncpp25_1.9.5-6 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_13.2.0-2ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.1.0-1 libmount1_2.38.1-5ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncurses6_6.4+20230625-2 libncursesw6_6.4+20230625-2 libnettle8_3.9.1-2 libnghttp2-14_1.55.1-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-2ubuntu1 libpam-modules_1.5.2-6ubuntu1 libpam-modules-bin_1.5.2-6ubuntu1 libpam-runtime_1.5.2-6ubuntu1 libpam0g_1.5.2-6ubuntu1 libpcre2-8-0_10.42-2 libperl5.36_5.36.0-7ubuntu1 libpipeline1_1.5.7-1 libpng16-16_1.6.40-1 libproc2-0_2:4.0.3-1ubuntu1 libprocps8_2:3.3.17-7ubuntu1 libpsl5_0.21.2-1 libquadmath0_13.2.0-2ubuntu1 libreadline8_8.2-1.3 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1ubuntu3 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-4ubuntu1 libsmartcols1_2.38.1-5ubuntu2 libsqlite3-0_3.42.0-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-2 libssl3_3.0.10-1ubuntu2 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_253.5-1ubuntu1 libsystemd0_253.5-1ubuntu1 libtasn1-6_4.19.0-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-2ubuntu1 libubsan1_13.2.0-2ubuntu1 libuchardet0_0.0.7-1build2 libudev1_253.5-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-5ubuntu2 libuv1_1.44.2-1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1ubuntu2 linux-libc-dev_6.3.0-7.7 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-2ubuntu1 lsb-base_11.6 lto-disabled-list_42 m4_1.4.19-3 make_4.3-4.1build1 man-db_2.11.2-3 mawk_1.3.4.20230730-1 mount_2.38.1-5ubuntu2 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 openssl_3.0.10-1ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7ubuntu1 perl-base_5.36.0-7ubuntu1 perl-modules-5.36_5.36.0-7ubuntu1 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_153 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_253.5-1ubuntu1 systemd-dev_253.5-1ubuntu1 systemd-sysv_253.5-1ubuntu1 sysvinit-utils_3.07-1ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.38.1-5ubuntu2 util-linux-extra_2.38.1-5ubuntu2 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-seq Binary: libbpp-seq-dev, libbpp-seq12 Architecture: any Version: 2.4.1-10 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev Package-List: libbpp-seq-dev deb libdevel optional arch=any libbpp-seq12 deb libs optional arch=any Checksums-Sha1: a79687bdf2ce4c5c2031cb5da8394a9420804f90 322620 libbpp-seq_2.4.1.orig.tar.gz e7f4afad355dc327ef3a55ef9cc77dcb077b8de1 28208 libbpp-seq_2.4.1-10.debian.tar.xz Checksums-Sha256: dbfcb04803e4b7f08f9f159da8a947c91906c3ca8b20683ac193f6dc524d4655 322620 libbpp-seq_2.4.1.orig.tar.gz a38c526879ef263d2c256193735dfaedefecebdfa3ecde418274c1fd491a19ab 28208 libbpp-seq_2.4.1-10.debian.tar.xz Files: bdafc80aab9591ff79556138d6555941 322620 libbpp-seq_2.4.1.orig.tar.gz 3e53b8d2d122c4c7c8dc3a125ff5b923 28208 libbpp-seq_2.4.1-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmTYxTwACgkQPCZ2P2xn 5uKraBAAp4i121hkdvTFdymdPx5K8nYrbBCe/Ld4pVhX1oNAg/ZMJmNA2kodQEG0 td6lCvLPA4zXoKvD/Qd10zwAtpVz1b4Oj6RxJV5YBRJ3B25q3YZQ/rBj7Rl60fc9 pNGAEeNmYBXp/J+dFrJowzarGBniRz867AR0g5fXNGGzVQeuQh3SUw4ERcYJGDFl 2m+yOADOtuclpfSQApqDwNVtcVvXQVkT+C3u1WsE/9pGIgdLwr/v+EWTK6ZrAgAs /cf0RGhRMMmLANoNsGhVV4YhoHb8tYJc0M7IhLZiB55w+DPSfDGUCv26VZaEXfbr pHp8MTgWgMo14PJw/suSYpgPztxARpNqEmL7iVoVdEjzpxir2Hgh/2VtR/QBnmKz 3OSGBFLw7EJlR7MEVQBtn6JoHJETON2FbcW48FbqTXsHVYiVl66kkhBwBLbpt71D apPDr1LS4OEHUobKlUvxZhddhCkBgCdCBAJi106xXUM3YWzrxAMpOvbEYLD6GVEV xKNphLE2Z9OLJ2e/WOHqKwOL6zrJ0qcPOPA+Og0OkK+66iCUgMgddNbpYQWjFkwW 1sURexZoCpDSTRM8XQy5fvHxL/XrJ32nrM+7Oxn+TBDpT0bMKCHML2Vj2gooBm/n y+dOXI1IULTyL/xC2k6/aRCV0CdBOk/UCC+HcLgRL8lMP0zhX0w= =bBHQ -----END PGP SIGNATURE----- gpgv: Signature made Sun Aug 13 11:57:48 2023 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-seq_2.4.1-10.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-seq in /<> dpkg-source: info: unpacking libbpp-seq_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq_2.4.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26502254 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26502254 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26502254 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbpp-seq dpkg-buildpackage: info: source version 2.4.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-powerpc64le-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/powerpc64le-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/powerpc64le-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (0.4s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-powerpc64le-linux-gnu dh_auto_build -a cd obj-powerpc64le-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-powerpc64le-linux-gnu/CMakeFiles /<>/obj-powerpc64le-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/depend make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/depend make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/src /<>/obj-powerpc64le-linux-gnu/src/CMakeFiles/bpp-seq-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/src /<>/obj-powerpc64le-linux-gnu/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o [ 0%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o [ 0%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp [ 44%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp [ 49%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp [ 49%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 61%] Linking CXX static library libbpp-seq.a cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-static.dir/cmake_clean_target.cmake cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq.a "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o" In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /usr/bin/ranlib libbpp-seq.a In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 62%] Built target bpp-seq-static [ 62%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp [ 85%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 92%] Linking CXX shared library libbpp-seq.so cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq.so.12 -o libbpp-seq.so.12.0.0 "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o" /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 cd /<>/obj-powerpc64le-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq.so.12.0.0 libbpp-seq.so.12 libbpp-seq.so make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 92%] Built target bpp-seq-shared make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/depend make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/test /<>/obj-powerpc64le-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/test /<>/obj-powerpc64le-linux-gnu/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/test /<>/obj-powerpc64le-linux-gnu/test/CMakeFiles/test_containers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/test /<>/obj-powerpc64le-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -MF CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o.d -o CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -c /<>/test/test_alphabets.cpp [ 94%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -MF CMakeFiles/test_bowker.dir/test_bowker.cpp.o.d -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<>/test/test_bowker.cpp [ 95%] Building CXX object test/CMakeFiles/test_containers.dir/test_containers.cpp.o [ 95%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_containers.dir/test_containers.cpp.o -MF CMakeFiles/test_containers.dir/test_containers.cpp.o.d -o CMakeFiles/test_containers.dir/test_containers.cpp.o -c /<>/test/test_containers.cpp cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -MF CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o.d -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /<>/test/test_alignment_scores.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_containers.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_alignment_scores.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/test/test_alphabets.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_bowker.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 95%] Linking CXX executable test_containers cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/<>/obj-powerpc64le-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 [ 95%] Linking CXX executable test_alphabets cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -o test_alphabets -Wl,-rpath,/<>/obj-powerpc64le-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 95%] Built target test_containers make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/depend make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/test /<>/obj-powerpc64le-linux-gnu/test/CMakeFiles/test_io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 96%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_io.dir/test_io.cpp.o -MF CMakeFiles/test_io.dir/test_io.cpp.o.d -o CMakeFiles/test_io.dir/test_io.cpp.o -c /<>/test/test_io.cpp [ 96%] Linking CXX executable test_bowker cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<>/obj-powerpc64le-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 96%] Built target test_alphabets make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/depend make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/test /<>/obj-powerpc64le-linux-gnu/test/CMakeFiles/test_sequences.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o -MF CMakeFiles/test_sequences.dir/test_sequences.cpp.o.d -o CMakeFiles/test_sequences.dir/test_sequences.cpp.o -c /<>/test/test_sequences.cpp [ 98%] Linking CXX executable test_alignment_scores cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_scores.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -o test_alignment_scores -Wl,-rpath,/<>/obj-powerpc64le-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 98%] Built target test_bowker make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/test /<>/obj-powerpc64le-linux-gnu/test/CMakeFiles/test_walker.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 99%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_walker.dir/test_walker.cpp.o -MF CMakeFiles/test_walker.dir/test_walker.cpp.o.d -o CMakeFiles/test_walker.dir/test_walker.cpp.o -c /<>/test/test_walker.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/test/test_io.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_sequences.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 99%] Built target test_alignment_scores In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/test/test_walker.cpp:42: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 99%] Linking CXX executable test_sequences cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o -o test_sequences -Wl,-rpath,/<>/obj-powerpc64le-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 [100%] Linking CXX executable test_walker cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o -o test_walker -Wl,-rpath,/<>/obj-powerpc64le-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target test_sequences [100%] Linking CXX executable test_io cd /<>/obj-powerpc64le-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_io.dir/test_io.cpp.o -o test_io -Wl,-rpath,/<>/obj-powerpc64le-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/powerpc64le-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target test_walker make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target test_io make[2]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-powerpc64le-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' dh_auto_test -a cd obj-powerpc64le-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/obj-powerpc64le-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-powerpc64le-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-powerpc64le-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-powerpc64le-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-powerpc64le-linux-gnu/DartConfiguration.tcl Test project /<>/obj-powerpc64le-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_alignment_scores 1: Test command: /<>/obj-powerpc64le-linux-gnu/test/test_alignment_scores 1: Working Directory: /<>/test 1: Test timeout computed to be: 60000 test 2 Start 2: test_alphabets 2: Test command: /<>/obj-powerpc64le-linux-gnu/test/test_alphabets 2: Working Directory: /<>/test 2: Test timeout computed to be: 60000 test 3 Start 3: test_bowker 3: Test command: /<>/obj-powerpc64le-linux-gnu/test/test_bowker 3: Working Directory: /<>/test 3: Test timeout computed to be: 60000 test 4 Start 4: test_containers 4: Test command: /<>/obj-powerpc64le-linux-gnu/test/test_containers 4: Working Directory: /<>/test 4: Test timeout computed to be: 60000 1: 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1: 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 0 1: 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1: 0.000000 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.333333 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 1: 0.000000 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.333333 1.000000 1.000000 1.000000 1.000000 1/7 Test #1: test_alignment_scores ............ Passed 0.01 sec test 5 Start 5: test_io 5: Test command: /<>/obj-powerpc64le-linux-gnu/test/test_io 5: Working Directory: /<>/test 5: Test timeout computed to be: 60000 2/7 Test #2: test_alphabets ................... Passed 0.01 sec test 6 Start 6: test_sequences 6: Test command: /<>/obj-powerpc64le-linux-gnu/test/test_sequences 6: Working Directory: /<>/test 6: Test timeout computed to be: 60000 3: 2 0.919699 4: 47 4: ----AUGCCG---GCGU----UUU----G--G-CCGACGUGUUUU-- 4: ---GAAGGCG---G-GU----UUU----GC-GACCGACG--UUUU-- 4: [>>> ] 8% [>>>> ] 12% [>>>>>> ] 17% [>>>>>>>> ] 21% [>>>>>>>>> ] 25% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 38% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>>>> ] 51% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 72% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 80% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 85% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 93% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% 4: 30 4: -AUGCCGGCGUUUUG-G-CCGACGUGUUUU 4: GAAGGCGG-GUUUUGCGACCGACG--UUUU 3/7 Test #4: test_containers .................. Passed 0.00 sec test 7 Start 7: test_walker 7: Test command: /<>/obj-powerpc64le-linux-gnu/test/test_walker 7: Working Directory: /<>/test 7: Test timeout computed to be: 60000 6: --- Strict match --- 6: ATTT: 0 6: TCG: 3 6: GATC: 29 6: CGTC: 33 6: CWCAT: 19 6: --- Degenerated match --- 6: CTCAT: 19 6: AAGCA: 16 4/7 Test #6: test_sequences ................... Passed 0.00 sec 7: 0 A 4 7: 1 U 5 7: 2 G 6 7: 3 C 7 7: 4 C 8 7: 5 G 9 7: 6 G 13 7: 7 C 14 7: 8 G 15 7: 9 U 16 7: 10 U 21 7: 11 U 22 7: 12 U 23 7: 13 G 28 7: 14 G 31 7: 15 C 33 7: 16 C 34 7: 17 G 35 7: 18 A 36 7: 19 C 37 7: 20 G 38 7: 21 U 39 7: 22 G 40 7: 23 U 41 7: 24 U 42 7: 25 U 43 7: 26 U 44 7: 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 4 7: 26 7: 44 5: example.fasta contains 100 sequences 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: _________________________________________________ 7: 0 - 0 7: 1 - 0 7: 2 - 0 7: 3 - 0 7: 4 A 0 7: 5 U 1 7: 6 G 2 7: 7 C 3 7: 8 C 4 7: 9 G 5 7: 10 - 5 7: 11 - 5 7: 12 - 5 7: 13 G 6 7: 14 C 7 7: 15 G 8 7: 16 U 9 7: 17 - 9 7: 18 - 9 7: 19 - 9 7: 20 - 9 7: 21 U 10 7: 22 U 11 7: 23 U 12 7: 24 - 12 7: 25 - 12 7: 26 - 12 7: 27 - 12 7: 28 G 13 7: 29 - 13 7: 30 - 13 7: 31 G 14 7: 32 - 14 7: 33 C 15 7: 34 C 16 7: 35 G 17 7: 36 A 18 7: 37 C 19 7: 38 G 20 7: 39 U 21 7: 40 G 22 7: 41 U 23 7: 42 U 24 7: 43 U 25 7: 44 U 26 7: 45 - 26 7: 46 - 26 7: 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 5/7 Test #7: test_walker ...................... Passed 0.02 sec 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 6/7 Test #5: test_io .......................... Passed 0.05 sec 3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0088 0.0504 0.0956 0.5112 3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0098 0.0494 0.0994 0.5074 7/7 Test #3: test_bowker ...................... Passed 24.29 sec 100% tests passed, 0 tests failed out of 7 Total Test time (real) = 24.29 sec make[1]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-powerpc64le-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-config.cmake -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.a -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.so.12.0.0 -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.so.12 -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Site.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App/SequenceApplicationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DistanceMatrix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolListTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/NucleicAcidsReplication.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQuality.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DNAToRNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequencePositionIterators.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSite.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/SequenceFileIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/MaseTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Phylip.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Stockholm.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPoly.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/GenBank.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Clustal.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/StreamSequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusIoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Dcse.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractIAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Fasta.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Mase.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPhd.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/GeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQualityTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CodonSiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWalker.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/Alphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/WordAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNY.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/MapSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Transliterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/StringSequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Sequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotation.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolList.h -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-targets-none.cmake make[1]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/powerpc64le-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. set -e install -d -m 755 debian/libbpp-seq-dev/usr/lib/powerpc64le-linux-gnu install -d -m 755 debian/libbpp-seq12/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.a debian/libbpp-seq-dev/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.so debian/libbpp-seq-dev/usr/lib/powerpc64le-linux-gnu mv /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.so.12 debian/libbpp-seq12/usr/lib/powerpc64le-linux-gnu mv /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libbpp-seq.so.12.0.0 debian/libbpp-seq12/usr/lib/powerpc64le-linux-gnu PKGDEV=libbpp-seq-dev PKGSHL=libbpp-seq12 install -d -m 755 debian/libbpp-seq-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-dev/usr/include install -d -m 755 debian/libbpp-seq-dev/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/cmake debian/libbpp-seq-dev/usr/lib/powerpc64le-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a b47948ded717002de755718bf3bb7abd8492c131 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 pkgstriptranslations: processing libbpp-seq-dev (in debian/libbpp-seq-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq12 (in debian/libbpp-seq12); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq12-dbgsym (in debian/.debhelper/libbpp-seq12/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq-dev/DEBIAN/control, package libbpp-seq-dev, directory debian/libbpp-seq-dev Searching for duplicated docs in dependency libbpp-seq12... symlinking changelog.Debian.gz in libbpp-seq-dev to file in libbpp-seq12 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-dev' in '../libbpp-seq-dev_2.4.1-10_ppc64el.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq12/DEBIAN/control, package libbpp-seq12, directory debian/libbpp-seq12 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq12 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq12' in '../libbpp-seq12_2.4.1-10_ppc64el.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libbpp-seq12/dbgsym-root/DEBIAN/control, package libbpp-seq12-dbgsym, directory debian/.debhelper/libbpp-seq12/dbgsym-root dpkg-deb: building package 'libbpp-seq12-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-seq12/libbpp-seq12-dbgsym_2.4.1-10_ppc64el.deb'. Renaming libbpp-seq12-dbgsym_2.4.1-10_ppc64el.deb to libbpp-seq12-dbgsym_2.4.1-10_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../libbpp-seq_2.4.1-10_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbpp-seq_2.4.1-10_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-13T17:17:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-seq_2.4.1-10_ppc64el.changes: ------------------------------------ Format: 1.8 Date: Sun, 13 Aug 2023 13:21:18 +0200 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 Built-For-Profiles: noudeb Architecture: ppc64el Version: 2.4.1-10 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: libbpp-seq-dev - Bio++ Sequence library development files libbpp-seq12 - Bio++ Sequence library Closes: 1037721 1042204 Changes: libbpp-seq (2.4.1-10) unstable; urgency=medium . * Team upload. * Standards-Version: 4.6.2 (routine-update) * Update symbols for gcc-13. Closes: #1037721, #1042204 * d/patches/spelling: fix a typo * d/control: Use ${devlibs:Depends} for the -dev package. Checksums-Sha1: 1011eaa55f0dcaf1e791499b500f8b51da86ad3d 925030 libbpp-seq-dev_2.4.1-10_ppc64el.deb 41cec7b7b7415d980466e8233404eda5f6ec4a71 5763352 libbpp-seq12-dbgsym_2.4.1-10_ppc64el.ddeb f72726b2e95c4bd43777493444d4f8774e4e5a19 442564 libbpp-seq12_2.4.1-10_ppc64el.deb 58557e2b585a947b7e3908f8c9c9233f0a84559d 7160 libbpp-seq_2.4.1-10_ppc64el.buildinfo Checksums-Sha256: a7cc5933ad28043d4575c37d2d9b18d6acd802394a3d46f7c007f493b157758c 925030 libbpp-seq-dev_2.4.1-10_ppc64el.deb a759c2e19b7a42d59bb255b09ab7b129476d00661cd38c05bce726d76d8e59cc 5763352 libbpp-seq12-dbgsym_2.4.1-10_ppc64el.ddeb d7860c50adb4edc620476af25487972f18ab0594c261f8a49a8683cacf66ccca 442564 libbpp-seq12_2.4.1-10_ppc64el.deb 05c83449ffc67b31b686f75616b890ebe37d34012a9eea37bef9302a2e506550 7160 libbpp-seq_2.4.1-10_ppc64el.buildinfo Files: 8cd5651e15d625661b5247e0833ca96a 925030 libdevel optional libbpp-seq-dev_2.4.1-10_ppc64el.deb e6d72813aca1517d04b0a056312a9d09 5763352 debug optional libbpp-seq12-dbgsym_2.4.1-10_ppc64el.ddeb 74318d2fa8ce47c4bd43dde62875b0a6 442564 libs optional libbpp-seq12_2.4.1-10_ppc64el.deb 2bf25429644ec7cbf78556c87b7ba14f 7160 science optional libbpp-seq_2.4.1-10_ppc64el.buildinfo /<>/libbpp-seq_2.4.1-10_ppc64el.changes.new could not be renamed to /<>/libbpp-seq_2.4.1-10_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 libbpp-seq12-dbgsym Architecture: ppc64el Version: 2.4.1-10 Checksums-Md5: 8cd5651e15d625661b5247e0833ca96a 925030 libbpp-seq-dev_2.4.1-10_ppc64el.deb e6d72813aca1517d04b0a056312a9d09 5763352 libbpp-seq12-dbgsym_2.4.1-10_ppc64el.ddeb 74318d2fa8ce47c4bd43dde62875b0a6 442564 libbpp-seq12_2.4.1-10_ppc64el.deb Checksums-Sha1: 1011eaa55f0dcaf1e791499b500f8b51da86ad3d 925030 libbpp-seq-dev_2.4.1-10_ppc64el.deb 41cec7b7b7415d980466e8233404eda5f6ec4a71 5763352 libbpp-seq12-dbgsym_2.4.1-10_ppc64el.ddeb f72726b2e95c4bd43777493444d4f8774e4e5a19 442564 libbpp-seq12_2.4.1-10_ppc64el.deb Checksums-Sha256: a7cc5933ad28043d4575c37d2d9b18d6acd802394a3d46f7c007f493b157758c 925030 libbpp-seq-dev_2.4.1-10_ppc64el.deb a759c2e19b7a42d59bb255b09ab7b129476d00661cd38c05bce726d76d8e59cc 5763352 libbpp-seq12-dbgsym_2.4.1-10_ppc64el.ddeb d7860c50adb4edc620476af25487972f18ab0594c261f8a49a8683cacf66ccca 442564 libbpp-seq12_2.4.1-10_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Sun, 13 Aug 2023 17:17:36 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.3), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-4ubuntu1), binutils-common (= 2.41-4ubuntu1), binutils-powerpc64le-linux-gnu (= 2.41-4ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), cmake (= 3.27.2-1), cmake-data (= 3.27.2-1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-12 (= 12.3.0-7ubuntu2), cpp-13 (= 13.2.0-2ubuntu1), d-shlibs (= 0.104), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-2ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-12 (= 12.3.0-7ubuntu2), gcc-12-base (= 12.3.0-7ubuntu2), gcc-13 (= 13.2.0-2ubuntu1), gcc-13-base (= 13.2.0-2ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gpgv (= 2.2.40-1.1ubuntu1), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapt-pkg6.0 (= 2.7.3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1ubuntu1), libasan8 (= 13.2.0-2ubuntu1), libatomic1 (= 13.2.0-2ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4ubuntu1), libblkid1 (= 2.38.1-5ubuntu2), libbpp-core-dev (= 2.4.1-10), libbpp-core4 (= 2.4.1-10), libbrotli1 (= 1.0.9-2build8), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-1ubuntu3), libc-dev-bin (= 2.38-1ubuntu3), libc6 (= 2.38-1ubuntu3), libc6-dev (= 2.38-1ubuntu3), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-2ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4ubuntu1), libctf0 (= 2.41-4ubuntu1), libcurl4 (= 8.2.1-1ubuntu2), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.3.0-7ubuntu2), libgcc-13-dev (= 13.2.0-2ubuntu1), libgcc-s1 (= 13.2.0-2ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2ubuntu3), libgnutls30 (= 3.8.1-3ubuntu1), libgomp1 (= 13.2.0-2ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.9.1-2), libicu72 (= 72.1-3ubuntu2), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-2ubuntu1), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblsan0 (= 13.2.0-2ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.3-1ubuntu1), libpsl5 (= 0.21.2-1), libquadmath0 (= 13.2.0-2ubuntu1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-4ubuntu1), libsmartcols1 (= 2.38.1-5ubuntu2), libssh-4 (= 0.10.5-2), libssl3 (= 3.0.10-1ubuntu2), libstdc++-13-dev (= 13.2.0-2ubuntu1), libstdc++6 (= 13.2.0-2ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-2ubuntu1), libubsan1 (= 13.2.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5ubuntu2), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.3), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 42), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), passwd (= 1:4.13+dfsg1-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), ubuntu-keyring (= 2021.03.26), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1691925678" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-seq-dev_2.4.1-10_ppc64el.deb ----------------------------------- new Debian package, version 2.0. size 925030 bytes: control archive=4327 bytes. 956 bytes, 21 lines control 10841 bytes, 133 lines md5sums Package: libbpp-seq-dev Source: libbpp-seq Version: 2.4.1-10 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8334 Depends: libbpp-seq12 (= 2.4.1-10), libbpp-core-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library development files Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of Bio++ classes for sequence analysis classes. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Alphabet/ -rw-r--r-- root/root 8838 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -rw-r--r-- root/root 17141 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/Alphabet.h -rw-r--r-- root/root 6250 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -rw-r--r-- root/root 2835 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -rw-r--r-- root/root 3834 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetState.h -rw-r--r-- root/root 8263 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetTools.h -rw-r--r-- root/root 2907 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h -rw-r--r-- root/root 4501 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h -rw-r--r-- root/root 13007 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h -rw-r--r-- root/root 3083 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/DNA.h -rw-r--r-- root/root 2991 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h -rw-r--r-- root/root 2984 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h -rw-r--r-- root/root 4080 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h -rw-r--r-- root/root 3307 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h -rw-r--r-- root/root 8599 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h -rw-r--r-- root/root 4181 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h -rw-r--r-- root/root 3759 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -rw-r--r-- root/root 4621 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -rw-r--r-- root/root 2784 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -rw-r--r-- root/root 3032 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNA.h -rw-r--r-- root/root 4111 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNY.h -rw-r--r-- root/root 15640 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/WordAlphabet.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/AlphabetIndex/ -rw-r--r-- root/root 5055 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -rw-r--r-- root/root 4300 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -rw-r--r-- root/root 3649 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -rw-r--r-- root/root 3647 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -rw-r--r-- root/root 3570 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h -rw-r--r-- root/root 3271 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h -rw-r--r-- root/root 4018 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h -rw-r--r-- root/root 3484 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h -rw-r--r-- root/root 3649 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h -rw-r--r-- root/root 3676 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h -rw-r--r-- root/root 3675 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h -rw-r--r-- root/root 3544 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h -rw-r--r-- root/root 3563 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h -rw-r--r-- root/root 3083 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h -rw-r--r-- root/root 3416 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h -rw-r--r-- root/root 3226 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h -rw-r--r-- root/root 3561 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h -rw-r--r-- root/root 5531 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h -rw-r--r-- root/root 4135 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h -rw-r--r-- root/root 4096 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h -rw-r--r-- root/root 4088 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h -rw-r--r-- root/root 3681 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h -rw-r--r-- root/root 4189 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h -rw-r--r-- root/root 3292 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h -rw-r--r-- root/root 3195 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/App/ -rw-r--r-- root/root 12347 2018-08-13 21:41 ./usr/include/Bpp/Seq/App/SequenceApplicationTools.h -rw-r--r-- root/root 11040 2018-08-13 21:41 ./usr/include/Bpp/Seq/CodonSiteTools.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Container/ -rw-r--r-- root/root 4968 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h -rw-r--r-- root/root 7089 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h -rw-r--r-- root/root 11864 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h -rw-r--r-- root/root 7851 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/MapSequenceContainer.h -rw-r--r-- root/root 8721 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h -rw-r--r-- root/root 11011 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainer.h -rw-r--r-- root/root 4345 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h -rw-r--r-- root/root 3137 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainerIterator.h -rw-r--r-- root/root 12842 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SequenceContainerTools.h -rw-r--r-- root/root 6732 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainer.h -rw-r--r-- root/root 2936 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainerExceptions.h -rw-r--r-- root/root 3884 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainerIterator.h -rw-r--r-- root/root 23382 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/SiteContainerTools.h -rw-r--r-- root/root 9718 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/VectorSequenceContainer.h -rw-r--r-- root/root 9499 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/VectorSiteContainer.h -rw-r--r-- root/root 6403 2018-08-13 21:41 ./usr/include/Bpp/Seq/CoreSequence.h -rw-r--r-- root/root 4280 2018-08-13 21:41 ./usr/include/Bpp/Seq/CoreSite.h -rw-r--r-- root/root 3190 2018-08-13 21:41 ./usr/include/Bpp/Seq/DNAToRNA.h -rw-r--r-- root/root 7430 2018-08-13 21:41 ./usr/include/Bpp/Seq/DistanceMatrix.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/GeneticCode/ -rw-r--r-- root/root 3612 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h -rw-r--r-- root/root 3483 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h -rw-r--r-- root/root 8386 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/GeneticCode.h -rw-r--r-- root/root 3599 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h -rw-r--r-- root/root 3629 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h -rw-r--r-- root/root 3427 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h -rw-r--r-- root/root 3686 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h -rw-r--r-- root/root 3441 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Io/ -rw-r--r-- root/root 5418 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractIAlignment.h -rw-r--r-- root/root 5352 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractISequence.h -rw-r--r-- root/root 2631 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractOAlignment.h -rw-r--r-- root/root 3393 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/AbstractOSequence.h -rw-r--r-- root/root 3322 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h -rw-r--r-- root/root 3332 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h -rw-r--r-- root/root 3950 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h -rw-r--r-- root/root 3950 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h -rw-r--r-- root/root 3311 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h -rw-r--r-- root/root 3339 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h -rw-r--r-- root/root 3313 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h -rw-r--r-- root/root 4752 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Clustal.h -rw-r--r-- root/root 3252 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Dcse.h -rw-r--r-- root/root 7377 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Fasta.h -rw-r--r-- root/root 2698 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/GenBank.h -rw-r--r-- root/root 4259 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/ISequence.h -rw-r--r-- root/root 2583 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/ISequenceStream.h -rw-r--r-- root/root 2156 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequence.h -rw-r--r-- root/root 4292 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequenceFactory.h -rw-r--r-- root/root 2057 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequenceStream.h -rw-r--r-- root/root 8432 2023-08-13 11:21 ./usr/include/Bpp/Seq/Io/Mase.h -rw-r--r-- root/root 5904 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/MaseTools.h -rw-r--r-- root/root 4723 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/NexusIoSequence.h -rw-r--r-- root/root 2961 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/NexusTools.h -rw-r--r-- root/root 4284 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/OSequence.h -rw-r--r-- root/root 2481 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/OSequenceStream.h -rw-r--r-- root/root 4873 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/PhredPhd.h -rw-r--r-- root/root 2918 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/PhredPoly.h -rw-r--r-- root/root 6671 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Phylip.h -rw-r--r-- root/root 2571 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/SequenceFileIndex.h -rw-r--r-- root/root 3752 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Stockholm.h -rw-r--r-- root/root 4174 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/StreamSequenceIterator.h -rw-r--r-- root/root 3540 2018-08-13 21:41 ./usr/include/Bpp/Seq/NucleicAcidsReplication.h -rw-r--r-- root/root 11109 2018-08-13 21:41 ./usr/include/Bpp/Seq/Sequence.h -rw-r--r-- root/root 4566 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceExceptions.h -rw-r--r-- root/root 3171 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceIterator.h -rw-r--r-- root/root 6708 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequencePositionIterators.h -rw-r--r-- root/root 16583 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceTools.h -rw-r--r-- root/root 2890 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWalker.h -rw-r--r-- root/root 14418 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithAnnotation.h -rw-r--r-- root/root 7050 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithAnnotationTools.h -rw-r--r-- root/root 25452 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithQuality.h -rw-r--r-- root/root 7161 2018-08-13 21:41 ./usr/include/Bpp/Seq/SequenceWithQualityTools.h -rw-r--r-- root/root 5750 2018-08-13 21:41 ./usr/include/Bpp/Seq/Site.h -rw-r--r-- root/root 3331 2018-08-13 21:41 ./usr/include/Bpp/Seq/SiteExceptions.h -rw-r--r-- root/root 2354 2018-08-13 21:41 ./usr/include/Bpp/Seq/SiteIterator.h -rw-r--r-- root/root 8688 2018-08-13 21:41 ./usr/include/Bpp/Seq/SiteTools.h -rw-r--r-- root/root 7494 2018-08-13 21:41 ./usr/include/Bpp/Seq/StringSequenceTools.h -rw-r--r-- root/root 21226 2018-08-13 21:41 ./usr/include/Bpp/Seq/SymbolList.h -rw-r--r-- root/root 8167 2018-08-13 21:41 ./usr/include/Bpp/Seq/SymbolListTools.h -rw-r--r-- root/root 5580 2018-08-13 21:41 ./usr/include/Bpp/Seq/Transliterator.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/cmake/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/ -rw-r--r-- root/root 2765 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-config-version.cmake -rw-r--r-- root/root 2263 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-config.cmake -rw-r--r-- root/root 1502 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-targets-none.cmake -rw-r--r-- root/root 4579 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/cmake/bpp-seq/bpp-seq-targets.cmake -rw-r--r-- root/root 7682496 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/libbpp-seq.a lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/libbpp-seq.so -> libbpp-seq.so.12 drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/ lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/changelog.Debian.gz -> ../libbpp-seq12/changelog.Debian.gz -rw-r--r-- root/root 23163 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/copyright libbpp-seq12_2.4.1-10_ppc64el.deb --------------------------------- new Debian package, version 2.0. size 442564 bytes: control archive=935 bytes. 924 bytes, 20 lines control 237 bytes, 3 lines md5sums 38 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libbpp-seq12 Source: libbpp-seq Version: 2.4.1-10 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1702 Depends: libbpp-core4 (>= 2.4.1), libc6 (>= 2.29), libgcc-s1 (>= 4.2), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the Bio++ classes for sequence analysis. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/libbpp-seq.so.12 -> libbpp-seq.so.12.0.0 -rw-r--r-- root/root 1706104 2023-08-13 11:21 ./usr/lib/powerpc64le-linux-gnu/libbpp-seq.so.12.0.0 drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/ -rw-r--r-- root/root 847 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/changelog.Debian.gz -rw-r--r-- root/root 23163 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 547240 Build-Time: 164 Distribution: mantic-proposed Host Architecture: ppc64el Install-Time: 22 Job: libbpp-seq_2.4.1-10.dsc Machine Architecture: ppc64el Package: libbpp-seq Package-Time: 187 Source-Version: 2.4.1-10 Space: 547240 Status: successful Version: 2.4.1-10 -------------------------------------------------------------------------------- Finished at 2023-08-13T17:17:37Z Build needed 00:03:07, 547240k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26502254 Scanning for processes to kill in build PACKAGEBUILD-26502254