https://launchpad.net/ubuntu/+source/libbpp-seq/2.4.1-10/+build/26502255 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-082 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Aug 17:10:52 ntpdate[3412795]: adjust time server 10.211.37.1 offset 0.000047 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=riscv64 PACKAGEBUILD-26502255 --image-type chroot /home/buildd/filecache-default/859743d4aa431be74cb50b11ddbd51d0d1ab094f Creating target for build PACKAGEBUILD-26502255 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=riscv64 PACKAGEBUILD-26502255 Starting target for build PACKAGEBUILD-26502255 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=riscv64 PACKAGEBUILD-26502255 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26502255 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=riscv64 PACKAGEBUILD-26502255 Updating target for build PACKAGEBUILD-26502255 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main riscv64 Packages [1315 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe riscv64 Packages [14.1 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5971 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 Packages [85.7 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [32.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe riscv64 Packages [423 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [157 kB] Fetched 23.2 MB in 32s (730 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-common binutils-riscv64-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 143 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 148 MB of archives. After this operation, 190 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main riscv64 libcrypt-dev riscv64 1:4.4.36-2 [246 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libc6-dev riscv64 2.38-1ubuntu3 [3404 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libc-dev-bin riscv64 2.38-1ubuntu3 [19.3 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main riscv64 libcrypt1 riscv64 1:4.4.36-2 [100 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main riscv64 linux-libc-dev riscv64 6.3.0-7.7 [1512 kB] Get:6 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libc6 riscv64 2.38-1ubuntu3 [2747 kB] Get:7 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libc-bin riscv64 2.38-1ubuntu3 [602 kB] Get:8 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 gcc-13-base riscv64 13.2.0-2ubuntu1 [42.9 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libgcc-s1 riscv64 13.2.0-2ubuntu1 [57.2 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main riscv64 base-files riscv64 13ubuntu1 [73.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main riscv64 debianutils riscv64 5.8-1 [102 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main riscv64 bash riscv64 5.2.15-2ubuntu1 [672 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main riscv64 bsdutils riscv64 1:2.38.1-5ubuntu2 [101 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main riscv64 coreutils riscv64 9.1-1ubuntu2 [1309 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main riscv64 liblzma5 riscv64 5.4.1-0.2 [115 kB] Get:16 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libstdc++6 riscv64 13.2.0-2ubuntu1 [780 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-1ubuntu2 [314 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main riscv64 libgcrypt20 riscv64 1.10.2-2ubuntu1 [554 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main riscv64 libacl1 riscv64 2.3.1-3 [15.7 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main riscv64 libapparmor1 riscv64 3.0.8-1ubuntu4 [43.1 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main riscv64 libaudit-common all 1:3.1.1-1 [5426 B] Get:22 http://ftpmaster.internal/ubuntu mantic/main riscv64 libcap-ng0 riscv64 0.8.3-1build2 [13.6 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main riscv64 libaudit1 riscv64 1:3.1.1-1 [44.2 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main riscv64 libblkid1 riscv64 2.38.1-5ubuntu2 [155 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main riscv64 libcap2 riscv64 1:2.66-4ubuntu1 [26.5 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main riscv64 libip4tc2 riscv64 1.8.9-2ubuntu2 [22.7 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main riscv64 libperl5.36 riscv64 5.36.0-7ubuntu1 [4203 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main riscv64 perl riscv64 5.36.0-7ubuntu1 [235 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main riscv64 perl-base riscv64 5.36.0-7ubuntu1 [1655 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main riscv64 perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:31 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libdb5.3 riscv64 5.3.28+dfsg2-2 [767 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main riscv64 zlib1g riscv64 1:1.2.13.dfsg-1ubuntu5 [60.5 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main riscv64 debconf all 1.5.82 [125 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libssl3 riscv64 3.0.10-1ubuntu2 [1712 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main riscv64 libkmod2 riscv64 30+20230519-1ubuntu2 [52.3 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main riscv64 libpcre2-8-0 riscv64 10.42-2 [143 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main riscv64 libselinux1 riscv64 3.5-1 [71.7 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main riscv64 libmount1 riscv64 2.38.1-5ubuntu2 [155 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main riscv64 libpam0g riscv64 1.5.2-6ubuntu1 [61.6 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main riscv64 libseccomp2 riscv64 2.5.4-1ubuntu3 [47.0 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main riscv64 systemd-sysv riscv64 253.5-1ubuntu1 [11.5 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main riscv64 systemd riscv64 253.5-1ubuntu1 [2886 kB] Get:43 http://ftpmaster.internal/ubuntu mantic/main riscv64 libsystemd-shared riscv64 253.5-1ubuntu1 [1665 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main riscv64 systemd-dev all 253.5-1ubuntu1 [78.5 kB] Get:45 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libatomic1 riscv64 13.2.0-2ubuntu1 [9540 B] Get:46 http://ftpmaster.internal/ubuntu mantic/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-3 [19.9 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main riscv64 libudev1 riscv64 253.5-1ubuntu1 [151 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main riscv64 libdevmapper1.02.1 riscv64 2:1.02.185-2ubuntu1 [131 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main riscv64 libuuid1 riscv64 2.38.1-5ubuntu2 [33.2 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main riscv64 libcryptsetup12 riscv64 2:2.6.1-4ubuntu1 [210 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main riscv64 libfdisk1 riscv64 2.38.1-5ubuntu2 [194 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main riscv64 libp11-kit0 riscv64 0.24.1-2ubuntu1 [196 kB] Get:53 http://ftpmaster.internal/ubuntu mantic/main riscv64 mount riscv64 2.38.1-5ubuntu2 [129 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main riscv64 libsystemd0 riscv64 253.5-1ubuntu1 [373 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main riscv64 libapt-pkg6.0 riscv64 2.7.3 [992 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main riscv64 tar riscv64 1.34+dfsg-1.2ubuntu1 [271 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main riscv64 dpkg riscv64 1.21.22ubuntu1 [1352 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main riscv64 dash riscv64 0.5.12-6ubuntu1 [92.5 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main riscv64 diffutils riscv64 1:3.8-4 [167 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main riscv64 findutils riscv64 4.9.0-5 [294 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main riscv64 grep riscv64 3.11-2 [167 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main riscv64 hostname riscv64 3.23+nmu1ubuntu1 [10.5 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main riscv64 libncurses6 riscv64 6.4+20230625-2 [113 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main riscv64 libncursesw6 riscv64 6.4+20230625-2 [152 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main riscv64 libtinfo6 riscv64 6.4+20230625-2 [107 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main riscv64 ncurses-bin riscv64 6.4+20230625-2 [183 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main riscv64 sed riscv64 4.9-1 [191 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main riscv64 libsmartcols1 riscv64 2.38.1-5ubuntu2 [109 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main riscv64 util-linux-extra riscv64 2.38.1-5ubuntu2 [104 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main riscv64 util-linux riscv64 2.38.1-5ubuntu2 [1150 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main riscv64 init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main riscv64 ncurses-base all 6.4+20230625-2 [24.5 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main riscv64 sysvinit-utils riscv64 3.07-1ubuntu1 [34.1 kB] Get:74 http://ftpmaster.internal/ubuntu mantic/main riscv64 lsb-base all 11.6 [4606 B] Get:75 http://ftpmaster.internal/ubuntu mantic/main riscv64 adduser all 3.137ubuntu1 [101 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main riscv64 gpgv riscv64 2.2.40-1.1ubuntu1 [205 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-2ubuntu3 [255 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main riscv64 libnettle8 riscv64 3.9.1-2 [214 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main riscv64 libhogweed6 riscv64 3.9.1-2 [200 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main riscv64 libidn2-0 riscv64 2.3.4-1 [116 kB] Get:81 http://ftpmaster.internal/ubuntu mantic/main riscv64 libtasn1-6 riscv64 4.19.0-3 [39.5 kB] Get:82 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libgnutls30 riscv64 3.8.1-3ubuntu1 [996 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main riscv64 apt riscv64 2.7.3 [1335 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main riscv64 libpam-modules-bin riscv64 1.5.2-6ubuntu1 [44.8 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main riscv64 libpam-modules riscv64 1.5.2-6ubuntu1 [267 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main riscv64 logsave riscv64 1.47.0-2ubuntu1 [21.6 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main riscv64 libext2fs2 riscv64 1.47.0-2ubuntu1 [235 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main riscv64 e2fsprogs riscv64 1.47.0-2ubuntu1 [596 kB] Get:89 http://ftpmaster.internal/ubuntu mantic/main riscv64 init riscv64 1.65.2ubuntu1 [5510 B] Get:90 http://ftpmaster.internal/ubuntu mantic/main riscv64 libattr1 riscv64 1:2.5.1-4 [11.4 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main riscv64 libdebconfclient0 riscv64 0.270ubuntu1 [11.0 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main riscv64 libmd0 riscv64 1.1.0-1 [28.3 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main riscv64 libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:94 http://ftpmaster.internal/ubuntu mantic/main riscv64 libsemanage-common all 3.5-1 [9890 B] Get:95 http://ftpmaster.internal/ubuntu mantic/main riscv64 libsepol2 riscv64 3.5-1 [259 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main riscv64 libsemanage2 riscv64 3.5-1 [97.7 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main riscv64 usrmerge all 35ubuntu1 [58.2 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main riscv64 libcom-err2 riscv64 1.47.0-2ubuntu1 [21.7 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main riscv64 libproc2-0 riscv64 2:4.0.3-1ubuntu1 [45.2 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main riscv64 libss2 riscv64 1.47.0-2ubuntu1 [16.7 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main riscv64 mawk riscv64 1.3.4.20230730-1 [126 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main riscv64 procps riscv64 2:4.0.3-1ubuntu1 [598 kB] Get:103 http://ftpmaster.internal/ubuntu mantic/main riscv64 sensible-utils all 0.0.20 [19.6 kB] Get:104 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 openssl riscv64 3.0.10-1ubuntu2 [1168 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main riscv64 ca-certificates all 20230311ubuntu1 [152 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main riscv64 libgssapi-krb5-2 riscv64 1.20.1-2 [125 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main riscv64 libkrb5-3 riscv64 1.20.1-2 [329 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main riscv64 libkrb5support0 riscv64 1.20.1-2 [31.3 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main riscv64 libk5crypto3 riscv64 1.20.1-2 [96.5 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main riscv64 readline-common all 8.2-1.3 [55.7 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main riscv64 libreadline8 riscv64 8.2-1.3 [131 kB] Get:112 http://ftpmaster.internal/ubuntu mantic/main riscv64 libsqlite3-0 riscv64 3.42.0-1 [586 kB] Get:113 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 tzdata all 2023c-9ubuntu1 [270 kB] Get:114 http://ftpmaster.internal/ubuntu mantic/main riscv64 libpng16-16 riscv64 1.6.40-1 [174 kB] Get:115 http://ftpmaster.internal/ubuntu mantic/main riscv64 xz-utils riscv64 5.4.1-0.2 [266 kB] Get:116 http://ftpmaster.internal/ubuntu mantic/main riscv64 advancecomp riscv64 2.5-1 [216 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libctf0 riscv64 2.41-4ubuntu1 [103 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libctf-nobfd0 riscv64 2.41-4ubuntu1 [105 kB] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.41-4ubuntu1 [896 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libbinutils riscv64 2.41-4ubuntu1 [483 kB] Get:121 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 binutils riscv64 2.41-4ubuntu1 [2990 B] Get:122 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 binutils-common riscv64 2.41-4ubuntu1 [221 kB] Get:123 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libsframe1 riscv64 2.41-4ubuntu1 [15.6 kB] Get:124 http://ftpmaster.internal/ubuntu mantic/main riscv64 libisl23 riscv64 0.26-3 [604 kB] Get:125 http://ftpmaster.internal/ubuntu mantic/main riscv64 libmpfr6 riscv64 4.2.0-1 [260 kB] Get:126 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 cpp-13 riscv64 13.2.0-2ubuntu1 [10.5 MB] Get:127 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 g++ riscv64 4:13.2.0-1ubuntu1 [1108 B] Get:128 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 gcc riscv64 4:13.2.0-1ubuntu1 [5186 B] Get:129 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 cpp riscv64 4:13.2.0-1ubuntu1 [28.9 kB] Get:130 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libcc1-0 riscv64 13.2.0-2ubuntu1 [45.5 kB] Get:131 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libgomp1 riscv64 13.2.0-2ubuntu1 [140 kB] Get:132 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libasan8 riscv64 13.2.0-2ubuntu1 [2484 kB] Get:133 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libgcc-13-dev riscv64 13.2.0-2ubuntu1 [3122 kB] Get:134 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 gcc-13 riscv64 13.2.0-2ubuntu1 [20.8 MB] Get:135 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libstdc++-13-dev riscv64 13.2.0-2ubuntu1 [5446 kB] Get:136 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 g++-13 riscv64 13.2.0-2ubuntu1 [12.0 MB] Get:137 http://ftpmaster.internal/ubuntu mantic/main riscv64 dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:138 http://ftpmaster.internal/ubuntu mantic/main riscv64 libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:139 http://ftpmaster.internal/ubuntu mantic/main riscv64 lto-disabled-list all 42 [12.4 kB] Get:140 http://ftpmaster.internal/ubuntu mantic/main riscv64 build-essential riscv64 12.10ubuntu1 [4934 B] Get:141 http://ftpmaster.internal/ubuntu mantic-proposed/universe riscv64 g++-12 riscv64 12.3.0-7ubuntu2 [9552 kB] Get:142 http://ftpmaster.internal/ubuntu mantic-proposed/universe riscv64 libstdc++-12-dev riscv64 12.3.0-7ubuntu2 [4916 kB] Get:143 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 gcc-12 riscv64 12.3.0-7ubuntu2 [16.3 MB] Get:144 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 libgcc-12-dev riscv64 12.3.0-7ubuntu2 [2637 kB] Get:145 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 cpp-12 riscv64 12.3.0-7ubuntu2 [8280 kB] Get:146 http://ftpmaster.internal/ubuntu mantic-proposed/main riscv64 gcc-12-base riscv64 12.3.0-7ubuntu2 [43.2 kB] Get:147 http://ftpmaster.internal/ubuntu mantic/main riscv64 libfakeroot riscv64 1.32.1-1 [27.5 kB] Get:148 http://ftpmaster.internal/ubuntu mantic/main riscv64 fakeroot riscv64 1.32.1-1 [67.9 kB] Get:149 http://ftpmaster.internal/ubuntu mantic/main riscv64 gpg riscv64 2.2.40-1.1ubuntu1 [491 kB] Get:150 http://ftpmaster.internal/ubuntu mantic/main riscv64 gpgconf riscv64 2.2.40-1.1ubuntu1 [121 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/main riscv64 gpg-agent riscv64 2.2.40-1.1ubuntu1 [239 kB] Get:152 http://ftpmaster.internal/ubuntu mantic/main riscv64 pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 148 MB in 27s (5503 kB/s) (Reading database ... 13011 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Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7ubuntu1) ... Setting up libgcc-12-dev:riscv64 (12.3.0-7ubuntu2) ... Setting up libgssapi-krb5-2:riscv64 (1.20.1-2) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up libgcc-13-dev:riscv64 (13.2.0-2ubuntu1) ... Setting up cpp (4:13.2.0-1ubuntu1) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:riscv64 (2.38-1ubuntu3) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up libstdc++-13-dev:riscv64 (13.2.0-2ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:riscv64 (12.3.0-7ubuntu2) ... Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-7ubuntu2) ... Setting up gcc-13 (13.2.0-2ubuntu1) ... Setting up g++-12 (12.3.0-7ubuntu2) ... Setting up g++-13 (13.2.0-2ubuntu1) ... Setting up gcc (4:13.2.0-1ubuntu1) ... Setting up g++ (4:13.2.0-1ubuntu1) ... Setting up build-essential (12.10ubuntu1) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... Processing triggers for debianutils (5.8-1) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26502255 riscv64 mantic-proposed -c chroot:build-PACKAGEBUILD-26502255 --arch=riscv64 --dist=mantic-proposed --nolog libbpp-seq_2.4.1-10.dsc Initiating build PACKAGEBUILD-26502255 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-082.buildd +==============================================================================+ | libbpp-seq 2.4.1-10 (riscv64) Sun, 13 Aug 2023 17:20:17 +0000 | +==============================================================================+ Package: libbpp-seq Version: 2.4.1-10 Source Version: 2.4.1-10 Distribution: mantic-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26502255/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-OVbyyA/resolver-5g3DKH' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq_2.4.1-10.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-seq-OVbyyA/libbpp-seq-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-OVbyyA' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [391 B] Get:5 copy:/<>/apt_archive ./ Packages [474 B] Fetched 1822 B in 1s (3290 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 38.8 MB of archives. After this operation, 150 MB of additional disk space will be used. 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Get:51 http://ftpmaster.internal/ubuntu mantic-proposed/universe riscv64 libbpp-core-dev riscv64 2.4.1-10 [4487 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.8 MB in 7s (5300 kB/s) Selecting previously unselected package libelf1:riscv64. 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Setting up cmake (3.27.2-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.41-4ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 libc6-dev_2.38-1ubuntu3 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 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Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev Package-List: libbpp-seq-dev deb libdevel optional arch=any libbpp-seq12 deb libs optional arch=any Checksums-Sha1: a79687bdf2ce4c5c2031cb5da8394a9420804f90 322620 libbpp-seq_2.4.1.orig.tar.gz e7f4afad355dc327ef3a55ef9cc77dcb077b8de1 28208 libbpp-seq_2.4.1-10.debian.tar.xz Checksums-Sha256: dbfcb04803e4b7f08f9f159da8a947c91906c3ca8b20683ac193f6dc524d4655 322620 libbpp-seq_2.4.1.orig.tar.gz a38c526879ef263d2c256193735dfaedefecebdfa3ecde418274c1fd491a19ab 28208 libbpp-seq_2.4.1-10.debian.tar.xz Files: bdafc80aab9591ff79556138d6555941 322620 libbpp-seq_2.4.1.orig.tar.gz 3e53b8d2d122c4c7c8dc3a125ff5b923 28208 libbpp-seq_2.4.1-10.debian.tar.xz 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warning: cannot verify inline signature for ./libbpp-seq_2.4.1-10.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-seq in /<> dpkg-source: info: unpacking libbpp-seq_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq_2.4.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26502255 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26502255 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26502255 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbpp-seq dpkg-buildpackage: info: source version 2.4.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-riscv64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/riscv64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/riscv64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (9.2s) -- Generating done (1.8s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-riscv64-linux-gnu dh_auto_build -a cd obj-riscv64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles /<>/obj-riscv64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/depend make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/src /<>/obj-riscv64-linux-gnu/src/CMakeFiles/bpp-seq-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/src /<>/obj-riscv64-linux-gnu/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp [ 44%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp [ 80%] Linking CXX shared library libbpp-seq.so cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq.so.12 -o libbpp-seq.so.12.0.0 "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o" 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"CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o" /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 [ 80%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq.so.12.0.0 libbpp-seq.so.12 libbpp-seq.so make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 82%] Built target bpp-seq-shared [ 82%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 83%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -MF CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o.d -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /<>/test/test_alignment_scores.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake "--color=" In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -MF CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o.d -o CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -c /<>/test/test_alphabets.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_alignment_scores.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/test/test_alphabets.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp [ 90%] Linking CXX executable test_alignment_scores cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_scores.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -o test_alignment_scores -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 90%] Built target test_alignment_scores make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 91%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -MF CMakeFiles/test_bowker.dir/test_bowker.cpp.o.d -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<>/test/test_bowker.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 91%] Linking CXX executable test_alphabets cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -o test_alphabets -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 91%] Built target test_alphabets make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_containers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 92%] Building CXX object test/CMakeFiles/test_containers.dir/test_containers.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_containers.dir/test_containers.cpp.o -MF CMakeFiles/test_containers.dir/test_containers.cpp.o.d -o CMakeFiles/test_containers.dir/test_containers.cpp.o -c /<>/test/test_containers.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_bowker.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_containers.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp [ 94%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 94%] Linking CXX executable test_bowker cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 94%] Built target test_bowker make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_io.dir/DependInfo.cmake "--color=" [ 94%] Linking CXX executable test_containers cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1 make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 [ 95%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_io.dir/test_io.cpp.o -MF CMakeFiles/test_io.dir/test_io.cpp.o.d -o CMakeFiles/test_io.dir/test_io.cpp.o -c /<>/test/test_io.cpp make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 95%] Built target test_containers [ 96%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 96%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_sequences.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o -MF CMakeFiles/test_sequences.dir/test_sequences.cpp.o.d -o CMakeFiles/test_sequences.dir/test_sequences.cpp.o -c /<>/test/test_sequences.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/test/test_io.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/test /<>/obj-riscv64-linux-gnu/test/CMakeFiles/test_walker.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_walker.dir/test_walker.cpp.o -MF CMakeFiles/test_walker.dir/test_walker.cpp.o.d -o CMakeFiles/test_walker.dir/test_walker.cpp.o -c /<>/test/test_walker.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_sequences.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/test/test_walker.cpp:42: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 98%] Linking CXX executable test_io cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_io.dir/test_io.cpp.o -o test_io -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 [ 98%] Linking CXX executable test_sequences cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o -o test_sequences -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 99%] Linking CXX static library libbpp-seq.a cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-static.dir/cmake_clean_target.cmake [ 99%] Built target test_io cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq.a 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"CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o" make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 99%] Built target test_sequences [100%] Linking CXX executable test_walker cd /<>/obj-riscv64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o -o test_walker -Wl,-rpath,/<>/obj-riscv64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/riscv64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [100%] Built target test_walker /usr/bin/ranlib libbpp-seq.a make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [100%] Built target bpp-seq-static make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-riscv64-linux-gnu && make -j8 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-config.cmake -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.a -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.so.12.0.0 -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.so.12 -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DistanceMatrix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWalker.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DNAToRNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequencePositionIterators.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Transliterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CodonSiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/GenBank.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusIoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Clustal.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Mase.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/SequenceFileIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Fasta.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractIAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/StreamSequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/MaseTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Stockholm.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Dcse.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPhd.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPoly.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Phylip.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/GeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App/SequenceApplicationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSite.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/NucleicAcidsReplication.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/StringSequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNY.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/WordAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/Alphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Sequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/MapSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQualityTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Site.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolListTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotation.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQuality.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolList.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotationTools.h -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-targets-none.cmake make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/riscv64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. set -e install -d -m 755 debian/libbpp-seq-dev/usr/lib/riscv64-linux-gnu install -d -m 755 debian/libbpp-seq12/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.a debian/libbpp-seq-dev/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.so debian/libbpp-seq-dev/usr/lib/riscv64-linux-gnu mv /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.so.12 debian/libbpp-seq12/usr/lib/riscv64-linux-gnu mv /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libbpp-seq.so.12.0.0 debian/libbpp-seq12/usr/lib/riscv64-linux-gnu PKGDEV=libbpp-seq-dev PKGSHL=libbpp-seq12 install -d -m 755 debian/libbpp-seq-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-dev/usr/include install -d -m 755 debian/libbpp-seq-dev/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/cmake debian/libbpp-seq-dev/usr/lib/riscv64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a e17a11a4f4d781ee399d0205cb4493164c46484a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 pkgstriptranslations: processing libbpp-seq12 (in debian/libbpp-seq12); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq-dev (in debian/libbpp-seq-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq12-dbgsym (in debian/.debhelper/libbpp-seq12/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq12/DEBIAN/control, package libbpp-seq12, directory debian/libbpp-seq12 pkgstripfiles: processing control file: debian/libbpp-seq-dev/DEBIAN/control, package libbpp-seq-dev, directory debian/libbpp-seq-dev INFO: pkgstripfiles: waiting for lock (libbpp-seq12) ... pkgstripfiles: processing control file: debian/.debhelper/libbpp-seq12/dbgsym-root/DEBIAN/control, package libbpp-seq12-dbgsym, directory debian/.debhelper/libbpp-seq12/dbgsym-root dpkg-deb: building package 'libbpp-seq12-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-seq12/libbpp-seq12-dbgsym_2.4.1-10_riscv64.deb'. Searching for duplicated docs in dependency libbpp-seq12... symlinking changelog.Debian.gz in libbpp-seq-dev to file in libbpp-seq12 pkgstripfiles: Running PNG optimization (using 8 cpus) for package libbpp-seq-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-dev' in '../libbpp-seq-dev_2.4.1-10_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package libbpp-seq12 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq12' in '../libbpp-seq12_2.4.1-10_riscv64.deb'. Renaming libbpp-seq12-dbgsym_2.4.1-10_riscv64.deb to libbpp-seq12-dbgsym_2.4.1-10_riscv64.ddeb dpkg-genbuildinfo --build=any -O../libbpp-seq_2.4.1-10_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbpp-seq_2.4.1-10_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-13T17:54:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-seq_2.4.1-10_riscv64.changes: ------------------------------------ Format: 1.8 Date: Sun, 13 Aug 2023 13:21:18 +0200 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 Built-For-Profiles: noudeb Architecture: riscv64 Version: 2.4.1-10 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: libbpp-seq-dev - Bio++ Sequence library development files libbpp-seq12 - Bio++ Sequence library Closes: 1037721 1042204 Changes: libbpp-seq (2.4.1-10) unstable; urgency=medium . * Team upload. * Standards-Version: 4.6.2 (routine-update) * Update symbols for gcc-13. Closes: #1037721, #1042204 * d/patches/spelling: fix a typo * d/control: Use ${devlibs:Depends} for the -dev package. Checksums-Sha1: 675e8d0080e16d5fe538a39fc1453cae8700177b 3711490 libbpp-seq-dev_2.4.1-10_riscv64.deb cd3acc0dbaf78d4a8ea517bafcc7438636678e43 6347632 libbpp-seq12-dbgsym_2.4.1-10_riscv64.ddeb 58f015838ae7d1ca83fd310be6917140d6c9efca 526698 libbpp-seq12_2.4.1-10_riscv64.deb 4611196f6db6d64ca2bee09178aa28dd410facbd 6975 libbpp-seq_2.4.1-10_riscv64.buildinfo Checksums-Sha256: f29844443676fa6eadceb52c5d81782be902c01fe2af2fb9eaa2bd981a4a3591 3711490 libbpp-seq-dev_2.4.1-10_riscv64.deb 0995481c5f6fb92830daed61bc304a3a22506366895aa690134bdd24422b37ab 6347632 libbpp-seq12-dbgsym_2.4.1-10_riscv64.ddeb 65a9400d3a4ace76a9e6230ad206ccd4379731ef2262315c713261f6d8b29115 526698 libbpp-seq12_2.4.1-10_riscv64.deb f60be34bd206178f0243c95f4619feab6935590b4503e3999d891e89640324c4 6975 libbpp-seq_2.4.1-10_riscv64.buildinfo Files: 011bd9bf0c6156015ec0d8cf05cf878e 3711490 libdevel optional libbpp-seq-dev_2.4.1-10_riscv64.deb 2398a6f1263dd3b7f449fbc10b515e2d 6347632 debug optional libbpp-seq12-dbgsym_2.4.1-10_riscv64.ddeb 2ab4e173b2de3dfb86b81acab664df79 526698 libs optional libbpp-seq12_2.4.1-10_riscv64.deb dcf410d1926b9064656dce77f60f4995 6975 science optional libbpp-seq_2.4.1-10_riscv64.buildinfo /<>/libbpp-seq_2.4.1-10_riscv64.changes.new could not be renamed to /<>/libbpp-seq_2.4.1-10_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 libbpp-seq12-dbgsym Architecture: riscv64 Version: 2.4.1-10 Checksums-Md5: 011bd9bf0c6156015ec0d8cf05cf878e 3711490 libbpp-seq-dev_2.4.1-10_riscv64.deb 2398a6f1263dd3b7f449fbc10b515e2d 6347632 libbpp-seq12-dbgsym_2.4.1-10_riscv64.ddeb 2ab4e173b2de3dfb86b81acab664df79 526698 libbpp-seq12_2.4.1-10_riscv64.deb Checksums-Sha1: 675e8d0080e16d5fe538a39fc1453cae8700177b 3711490 libbpp-seq-dev_2.4.1-10_riscv64.deb cd3acc0dbaf78d4a8ea517bafcc7438636678e43 6347632 libbpp-seq12-dbgsym_2.4.1-10_riscv64.ddeb 58f015838ae7d1ca83fd310be6917140d6c9efca 526698 libbpp-seq12_2.4.1-10_riscv64.deb Checksums-Sha256: f29844443676fa6eadceb52c5d81782be902c01fe2af2fb9eaa2bd981a4a3591 3711490 libbpp-seq-dev_2.4.1-10_riscv64.deb 0995481c5f6fb92830daed61bc304a3a22506366895aa690134bdd24422b37ab 6347632 libbpp-seq12-dbgsym_2.4.1-10_riscv64.ddeb 65a9400d3a4ace76a9e6230ad206ccd4379731ef2262315c713261f6d8b29115 526698 libbpp-seq12_2.4.1-10_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 13 Aug 2023 17:54:20 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.3), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-4ubuntu1), binutils-common (= 2.41-4ubuntu1), binutils-riscv64-linux-gnu (= 2.41-4ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), cmake (= 3.27.2-1), cmake-data (= 3.27.2-1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-12 (= 12.3.0-7ubuntu2), cpp-13 (= 13.2.0-2ubuntu1), d-shlibs (= 0.104), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-2ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-12 (= 12.3.0-7ubuntu2), gcc-12-base (= 12.3.0-7ubuntu2), gcc-13 (= 13.2.0-2ubuntu1), gcc-13-base (= 13.2.0-2ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gpgv (= 2.2.40-1.1ubuntu1), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapt-pkg6.0 (= 2.7.3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1ubuntu1), libasan8 (= 13.2.0-2ubuntu1), libatomic1 (= 13.2.0-2ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4ubuntu1), libblkid1 (= 2.38.1-5ubuntu2), libbpp-core-dev (= 2.4.1-10), libbpp-core4 (= 2.4.1-10), libbrotli1 (= 1.0.9-2build8), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-1ubuntu3), libc-dev-bin (= 2.38-1ubuntu3), libc6 (= 2.38-1ubuntu3), libc6-dev (= 2.38-1ubuntu3), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-2ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4ubuntu1), libctf0 (= 2.41-4ubuntu1), libcurl4 (= 8.2.1-1ubuntu2), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.3.0-7ubuntu2), libgcc-13-dev (= 13.2.0-2ubuntu1), libgcc-s1 (= 13.2.0-2ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2ubuntu3), libgnutls30 (= 3.8.1-3ubuntu1), libgomp1 (= 13.2.0-2ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.9.1-2), libicu72 (= 72.1-3ubuntu2), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.3-1ubuntu1), libpsl5 (= 0.21.2-1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libselinux1 (= 3.5-1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-4ubuntu1), libsmartcols1 (= 2.38.1-5ubuntu2), libssh-4 (= 0.10.5-2), libssl3 (= 3.0.10-1ubuntu2), libstdc++-13-dev (= 13.2.0-2ubuntu1), libstdc++6 (= 13.2.0-2ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5ubuntu2), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.3), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 42), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), passwd (= 1:4.13+dfsg1-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), ubuntu-keyring (= 2021.03.26), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1691925678" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-seq-dev_2.4.1-10_riscv64.deb ----------------------------------- new Debian package, version 2.0. size 3711490 bytes: control archive=4326 bytes. 957 bytes, 21 lines control 10821 bytes, 133 lines md5sums Package: libbpp-seq-dev Source: libbpp-seq Version: 2.4.1-10 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 33145 Depends: libbpp-seq12 (= 2.4.1-10), libbpp-core-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library development files Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of Bio++ classes for sequence analysis classes. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Alphabet/ -rw-r--r-- root/root 8838 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -rw-r--r-- root/root 17141 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/Alphabet.h -rw-r--r-- root/root 6250 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -rw-r--r-- root/root 2835 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -rw-r--r-- root/root 3834 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetState.h -rw-r--r-- root/root 8263 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetTools.h 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./usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -rw-r--r-- root/root 4621 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -rw-r--r-- root/root 2784 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -rw-r--r-- root/root 3032 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNA.h -rw-r--r-- root/root 4111 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNY.h -rw-r--r-- root/root 15640 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/WordAlphabet.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/AlphabetIndex/ -rw-r--r-- root/root 5055 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -rw-r--r-- root/root 4300 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -rw-r--r-- root/root 3649 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -rw-r--r-- root/root 3647 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -rw-r--r-- 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./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h -rw-r--r-- root/root 3226 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h -rw-r--r-- root/root 3561 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h -rw-r--r-- root/root 5531 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h -rw-r--r-- root/root 4135 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h -rw-r--r-- root/root 4096 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h -rw-r--r-- root/root 4088 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h -rw-r--r-- root/root 3681 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h -rw-r--r-- root/root 4189 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h -rw-r--r-- root/root 3292 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h -rw-r--r-- root/root 3195 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/App/ -rw-r--r-- root/root 12347 2018-08-13 21:41 ./usr/include/Bpp/Seq/App/SequenceApplicationTools.h -rw-r--r-- root/root 11040 2018-08-13 21:41 ./usr/include/Bpp/Seq/CodonSiteTools.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Container/ -rw-r--r-- root/root 4968 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h -rw-r--r-- root/root 7089 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h -rw-r--r-- root/root 11864 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h -rw-r--r-- root/root 7851 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/MapSequenceContainer.h -rw-r--r-- root/root 8721 2018-08-13 21:41 ./usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h -rw-r--r-- root/root 11011 2018-08-13 21:41 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./usr/include/Bpp/Seq/CoreSequence.h -rw-r--r-- root/root 4280 2018-08-13 21:41 ./usr/include/Bpp/Seq/CoreSite.h -rw-r--r-- root/root 3190 2018-08-13 21:41 ./usr/include/Bpp/Seq/DNAToRNA.h -rw-r--r-- root/root 7430 2018-08-13 21:41 ./usr/include/Bpp/Seq/DistanceMatrix.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/GeneticCode/ -rw-r--r-- root/root 3612 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h -rw-r--r-- root/root 3483 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h -rw-r--r-- root/root 8386 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/GeneticCode.h -rw-r--r-- root/root 3599 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h -rw-r--r-- root/root 3629 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h -rw-r--r-- root/root 3427 2018-08-13 21:41 ./usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h -rw-r--r-- 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./usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h -rw-r--r-- root/root 3311 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h -rw-r--r-- root/root 3339 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h -rw-r--r-- root/root 3313 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h -rw-r--r-- root/root 4752 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Clustal.h -rw-r--r-- root/root 3252 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Dcse.h -rw-r--r-- root/root 7377 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/Fasta.h -rw-r--r-- root/root 2698 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/GenBank.h -rw-r--r-- root/root 4259 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/ISequence.h -rw-r--r-- root/root 2583 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/ISequenceStream.h -rw-r--r-- root/root 2156 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequence.h -rw-r--r-- root/root 4292 2018-08-13 21:41 ./usr/include/Bpp/Seq/Io/IoSequenceFactory.h -rw-r--r-- 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2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-config-version.cmake -rw-r--r-- root/root 2259 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-config.cmake -rw-r--r-- root/root 1486 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-targets-none.cmake -rw-r--r-- root/root 4571 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/cmake/bpp-seq/bpp-seq-targets.cmake -rw-r--r-- root/root 33089226 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/libbpp-seq.a lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/libbpp-seq.so -> libbpp-seq.so.12 drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/ lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/changelog.Debian.gz -> ../libbpp-seq12/changelog.Debian.gz -rw-r--r-- root/root 23163 2023-08-13 11:21 ./usr/share/doc/libbpp-seq-dev/copyright libbpp-seq12_2.4.1-10_riscv64.deb --------------------------------- new Debian package, version 2.0. size 526698 bytes: control archive=931 bytes. 924 bytes, 20 lines control 233 bytes, 3 lines md5sums 38 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libbpp-seq12 Source: libbpp-seq Version: 2.4.1-10 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1675 Depends: libbpp-core4 (>= 2.4.1), libc6 (>= 2.27), libgcc-s1 (>= 4.2), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the Bio++ classes for sequence analysis. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/libbpp-seq.so.12 -> libbpp-seq.so.12.0.0 -rw-r--r-- root/root 1679064 2023-08-13 11:21 ./usr/lib/riscv64-linux-gnu/libbpp-seq.so.12.0.0 drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/ -rw-r--r-- root/root 847 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/changelog.Debian.gz -rw-r--r-- root/root 23163 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 524184 Build-Time: 1893 Distribution: mantic-proposed Host Architecture: riscv64 Install-Time: 134 Job: libbpp-seq_2.4.1-10.dsc Machine Architecture: riscv64 Package: libbpp-seq Package-Time: 2049 Source-Version: 2.4.1-10 Space: 524184 Status: successful Version: 2.4.1-10 -------------------------------------------------------------------------------- Finished at 2023-08-13T17:54:26Z Build needed 00:34:09, 524184k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=riscv64 PACKAGEBUILD-26502255 Scanning for processes to kill in build PACKAGEBUILD-26502255 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=mantic --arch=riscv64 PACKAGEBUILD-26502255 Stopping target for build PACKAGEBUILD-26502255 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=mantic --arch=riscv64 PACKAGEBUILD-26502255 Removing build PACKAGEBUILD-26502255