RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '844d0d53d0460e195c9286aa312aca1b7d71d44c', '/home/buildd/filecache-default/23e5bdbe3aa8310d834829236e3e0bef0c15d9c7'] Synching the system clock with the buildd NTP service... 7 Sep 11:45:36 ntpdate[8687]: adjust time server 10.211.37.1 offset 0.000056 sec Unpacking chroot for build 844d0d53d0460e195c9286aa312aca1b7d71d44c RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '844d0d53d0460e195c9286aa312aca1b7d71d44c'] Mounting chroot for build 844d0d53d0460e195c9286aa312aca1b7d71d44c RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '844d0d53d0460e195c9286aa312aca1b7d71d44c', 'deb http://ftpmaster.internal/ubuntu maverick main universe'] Overriding sources.list in build-844d0d53d0460e195c9286aa312aca1b7d71d44c RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '844d0d53d0460e195c9286aa312aca1b7d71d44c', 'amd64'] Updating debian chroot for build 844d0d53d0460e195c9286aa312aca1b7d71d44c Get:1 http://ftpmaster.internal maverick Release.gpg [189B] Ign http://ftpmaster.internal/ubuntu/ maverick/main Translation-en Ign http://ftpmaster.internal/ubuntu/ maverick/universe Translation-en Get:2 http://ftpmaster.internal maverick Release [57.3kB] Get:3 http://ftpmaster.internal maverick/main amd64 Packages [1502kB] Get:4 http://ftpmaster.internal maverick/universe amd64 Packages [5760kB] Fetched 7320kB in 2s (3654kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils busybox-initramfs cpp-4.4 dpkg dpkg-dev e2fslibs e2fsprogs g++-4.4 gcc-4.4 gcc-4.4-base gcc-4.5-base gzip ifupdown initramfs-tools initramfs-tools-bin libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libdpkg-perl libgcc1 libglib2.0-0 libgomp1 libnih-dbus1 libnih1 libpam-modules libpam-runtime libpam0g libss2 libstdc++6 libstdc++6-4.4-dev libudev0 linux-libc-dev locales login mountall passwd pkg-create-dbgsym python-minimal python2.6-minimal tzdata udev upstart 46 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 43.2MB of archives. After this operation, 6009kB disk space will be freed. WARNING: The following packages cannot be authenticated! dpkg libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 gcc-4.5-base libgcc1 libstdc++6 tzdata e2fslibs e2fsprogs gzip login python-minimal python2.6-minimal libpam-modules apt libcomerr2 libpam-runtime libpam0g libss2 passwd busybox-initramfs libnih-dbus1 libnih1 libudev0 libglib2.0-0 udev initramfs-tools initramfs-tools-bin mountall upstart ifupdown locales apt-transport-https g++-4.4 libstdc++6-4.4-dev gcc-4.4 cpp-4.4 gcc-4.4-base binutils dpkg-dev libdpkg-perl pkg-create-dbgsym Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ maverick/main dpkg amd64 1.15.8.4ubuntu2 [2133kB] Get:2 http://ftpmaster.internal/ubuntu/ maverick/main libc-dev-bin amd64 2.12.1-0ubuntu3 [227kB] Get:3 http://ftpmaster.internal/ubuntu/ maverick/main libc6-dev amd64 2.12.1-0ubuntu3 [2727kB] Get:4 http://ftpmaster.internal/ubuntu/ maverick/main libc-bin amd64 2.12.1-0ubuntu3 [817kB] Get:5 http://ftpmaster.internal/ubuntu/ maverick/main libc6 amd64 2.12.1-0ubuntu3 [4259kB] Get:6 http://ftpmaster.internal/ubuntu/ maverick/main linux-libc-dev amd64 2.6.35-20.29 [793kB] Get:7 http://ftpmaster.internal/ubuntu/ maverick/main libgomp1 amd64 4.5.1-5ubuntu1 [25.4kB] Get:8 http://ftpmaster.internal/ubuntu/ maverick/main gcc-4.5-base amd64 4.5.1-5ubuntu1 [121kB] Get:9 http://ftpmaster.internal/ubuntu/ maverick/main libgcc1 amd64 1:4.5.1-5ubuntu1 [42.9kB] Get:10 http://ftpmaster.internal/ubuntu/ maverick/main libstdc++6 amd64 4.5.1-5ubuntu1 [325kB] Get:11 http://ftpmaster.internal/ubuntu/ maverick/main tzdata all 2010l-1 [680kB] Get:12 http://ftpmaster.internal/ubuntu/ maverick/main e2fslibs amd64 1.41.12-1ubuntu2 [144kB] Get:13 http://ftpmaster.internal/ubuntu/ maverick/main e2fsprogs amd64 1.41.12-1ubuntu2 [819kB] Get:14 http://ftpmaster.internal/ubuntu/ maverick/main gzip amd64 1.3.12-9ubuntu1.1 [107kB] Get:15 http://ftpmaster.internal/ubuntu/ maverick/main login amd64 1:4.1.4.2-1ubuntu3 [324kB] Get:16 http://ftpmaster.internal/ubuntu/ maverick/main python-minimal all 2.6.5-13ubuntu1 [33.7kB] Get:17 http://ftpmaster.internal/ubuntu/ maverick/main python2.6-minimal amd64 2.6.6-1ubuntu1 [1493kB] Get:18 http://ftpmaster.internal/ubuntu/ maverick/main libpam-modules amd64 1.1.1-4ubuntu1 [337kB] Get:19 http://ftpmaster.internal/ubuntu/ maverick/main apt amd64 0.8.0ubuntu3 [2090kB] Get:20 http://ftpmaster.internal/ubuntu/ maverick/main libcomerr2 amd64 1.41.12-1ubuntu2 [52.0kB] Get:21 http://ftpmaster.internal/ubuntu/ maverick/main libpam-runtime all 1.1.1-4ubuntu1 [85.2kB] Get:22 http://ftpmaster.internal/ubuntu/ maverick/main libpam0g amd64 1.1.1-4ubuntu1 [94.8kB] Get:23 http://ftpmaster.internal/ubuntu/ maverick/main libss2 amd64 1.41.12-1ubuntu2 [57.0kB] Get:24 http://ftpmaster.internal/ubuntu/ maverick/main passwd amd64 1:4.1.4.2-1ubuntu3 [954kB] Get:25 http://ftpmaster.internal/ubuntu/ maverick/main busybox-initramfs amd64 1:1.15.3-1ubuntu4 [183kB] Get:26 http://ftpmaster.internal/ubuntu/ maverick/main libnih-dbus1 amd64 1.0.2-1ubuntu2 [14.8kB] Get:27 http://ftpmaster.internal/ubuntu/ maverick/main libnih1 amd64 1.0.2-1ubuntu2 [51.2kB] Get:28 http://ftpmaster.internal/ubuntu/ maverick/main libudev0 amd64 161+git20100827-1 [127kB] Get:29 http://ftpmaster.internal/ubuntu/ maverick/main libglib2.0-0 amd64 2.25.15-0ubuntu2 [1492kB] Get:30 http://ftpmaster.internal/ubuntu/ maverick/main udev amd64 161+git20100827-1 [493kB] Get:31 http://ftpmaster.internal/ubuntu/ maverick/main initramfs-tools all 0.98ubuntu2 [106kB] Get:32 http://ftpmaster.internal/ubuntu/ maverick/main initramfs-tools-bin amd64 0.98ubuntu2 [65.3kB] Get:33 http://ftpmaster.internal/ubuntu/ maverick/main mountall amd64 2.16 [54.9kB] Get:34 http://ftpmaster.internal/ubuntu/ maverick/main upstart amd64 0.6.6-3 [210kB] Get:35 http://ftpmaster.internal/ubuntu/ maverick/main ifupdown amd64 0.6.10ubuntu3 [58.9kB] Get:36 http://ftpmaster.internal/ubuntu/ maverick/main locales all 2.13+git20100825-1 [3499kB] Get:37 http://ftpmaster.internal/ubuntu/ maverick/main apt-transport-https amd64 0.8.0ubuntu3 [91.0kB] Get:38 http://ftpmaster.internal/ubuntu/ maverick/main g++-4.4 amd64 4.4.4-13ubuntu2 [5600kB] Get:39 http://ftpmaster.internal/ubuntu/ maverick/main libstdc++6-4.4-dev amd64 4.4.4-13ubuntu2 [1564kB] Get:40 http://ftpmaster.internal/ubuntu/ maverick/main gcc-4.4 amd64 4.4.4-13ubuntu2 [2893kB] Get:41 http://ftpmaster.internal/ubuntu/ maverick/main cpp-4.4 amd64 4.4.4-13ubuntu2 [3974kB] Get:42 http://ftpmaster.internal/ubuntu/ maverick/main gcc-4.4-base amd64 4.4.4-13ubuntu2 [123kB] Get:43 http://ftpmaster.internal/ubuntu/ maverick/main binutils amd64 2.20.51.20100813-1ubuntu3 [2554kB] Get:44 http://ftpmaster.internal/ubuntu/ maverick/main dpkg-dev all 1.15.8.4ubuntu2 [772kB] Get:45 http://ftpmaster.internal/ubuntu/ maverick/main libdpkg-perl all 1.15.8.4ubuntu2 [504kB] Get:46 http://ftpmaster.internal/ubuntu/ maverick/main pkg-create-dbgsym all 0.44 [13.3kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.2MB in 2s (21.5MB/s) (Reading database ... 13280 files and directories currently installed.) Preparing to replace dpkg 1.15.8.2ubuntu3 (using .../dpkg_1.15.8.4ubuntu2_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.15.8.4ubuntu2) ... (Reading database ... 13334 files and directories currently installed.) Preparing to replace libc-dev-bin 2.12-0ubuntu5 (using .../libc-dev-bin_2.12.1-0ubuntu3_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.12-0ubuntu5 (using .../libc6-dev_2.12.1-0ubuntu3_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.12-0ubuntu5 (using .../libc-bin_2.12.1-0ubuntu3_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.12.1-0ubuntu3) ... (Reading database ... 13334 files and directories currently installed.) Preparing to replace libc6 2.12-0ubuntu5 (using .../libc6_2.12.1-0ubuntu3_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.12.1-0ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13334 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.35-14.20 (using .../linux-libc-dev_2.6.35-20.29_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.5.1-1ubuntu1 (using .../libgomp1_4.5.1-5ubuntu1_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.5-base 4.5.1-1ubuntu1 (using .../gcc-4.5-base_4.5.1-5ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.5-base ... Setting up gcc-4.5-base (4.5.1-5ubuntu1) ... (Reading database ... 13335 files and directories currently installed.) Preparing to replace libgcc1 1:4.5.1-1ubuntu1 (using .../libgcc1_1%3a4.5.1-5ubuntu1_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.5.1-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13335 files and directories currently installed.) Preparing to replace libstdc++6 4.5.1-1ubuntu1 (using .../libstdc++6_4.5.1-5ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.5.1-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13335 files and directories currently installed.) Preparing to replace tzdata 2010k-0ubuntu1 (using .../tzdata_2010l-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2010l-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Sep 7 10:46:01 UTC 2010. Universal Time is now: Tue Sep 7 10:46:01 UTC 2010. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 13335 files and directories currently installed.) Preparing to replace e2fslibs 1.41.12-1ubuntu1 (using .../e2fslibs_1.41.12-1ubuntu2_amd64.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.12-1ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13335 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.12-1ubuntu1 (using .../e2fsprogs_1.41.12-1ubuntu2_amd64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.12-1ubuntu2) ... (Reading database ... 13335 files and directories currently installed.) Preparing to replace gzip 1.3.12-9ubuntu1 (using .../gzip_1.3.12-9ubuntu1.1_amd64.deb) ... Unpacking replacement gzip ... Setting up gzip (1.3.12-9ubuntu1.1) ... (Reading database ... 13335 files and directories currently installed.) Preparing to replace login 1:4.1.4.2-1ubuntu2 (using .../login_1%3a4.1.4.2-1ubuntu3_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.2-1ubuntu3) ... Installing new version of config file /etc/securetty ... (Reading database ... 13335 files and directories currently installed.) Preparing to replace python-minimal 2.6.5-12ubuntu1 (using .../python-minimal_2.6.5-13ubuntu1_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.6.5-13ubuntu1) ... (Reading database ... 13335 files and directories currently installed.) Preparing to replace python2.6-minimal 2.6.6~rc1-1ubuntu1 (using .../python2.6-minimal_2.6.6-1ubuntu1_amd64.deb) ... Unpacking replacement python2.6-minimal ... Setting up python2.6-minimal (2.6.6-1ubuntu1) ... (Reading database ... 13335 files and directories currently installed.) Preparing to replace libpam-modules 1.1.1-3ubuntu3 (using .../libpam-modules_1.1.1-4ubuntu1_amd64.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.1-4ubuntu1) ... (Reading database ... 13333 files and directories currently installed.) Preparing to replace apt 0.7.26~exp12ubuntu3 (using .../apt_0.8.0ubuntu3_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.8.0ubuntu3) ... Installing new version of config file /etc/cron.daily/apt ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13328 files and directories currently installed.) Preparing to replace libcomerr2 1.41.12-1ubuntu1 (using .../libcomerr2_1.41.12-1ubuntu2_amd64.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.12-1ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13328 files and directories currently installed.) Preparing to replace libpam-runtime 1.1.1-3ubuntu3 (using .../libpam-runtime_1.1.1-4ubuntu1_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.1-4ubuntu1) ... (Reading database ... 13327 files and directories currently installed.) Preparing to replace libpam0g 1.1.1-3ubuntu3 (using .../libpam0g_1.1.1-4ubuntu1_amd64.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.1-4ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13326 files and directories currently installed.) Preparing to replace libss2 1.41.12-1ubuntu1 (using .../libss2_1.41.12-1ubuntu2_amd64.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.12-1ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13326 files and directories currently installed.) Preparing to replace passwd 1:4.1.4.2-1ubuntu2 (using .../passwd_1%3a4.1.4.2-1ubuntu3_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.4.2-1ubuntu3) ... (Reading database ... 13326 files and directories currently installed.) Preparing to replace busybox-initramfs 1:1.15.3-1ubuntu1 (using .../busybox-initramfs_1%3a1.15.3-1ubuntu4_amd64.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace libnih-dbus1 1.0.2-1ubuntu1 (using .../libnih-dbus1_1.0.2-1ubuntu2_amd64.deb) ... Unpacking replacement libnih-dbus1 ... Preparing to replace libnih1 1.0.2-1ubuntu1 (using .../libnih1_1.0.2-1ubuntu2_amd64.deb) ... Unpacking replacement libnih1 ... Preparing to replace libudev0 151-12 (using .../libudev0_161+git20100827-1_amd64.deb) ... Unpacking replacement libudev0 ... Preparing to replace libglib2.0-0 2.25.13-1ubuntu1 (using .../libglib2.0-0_2.25.15-0ubuntu2_amd64.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace udev 151-12 (using .../udev_161+git20100827-1_amd64.deb) ... Adding 'local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' Unpacking replacement udev ... Preparing to replace initramfs-tools 0.97.2ubuntu2 (using .../initramfs-tools_0.98ubuntu2_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.97.2ubuntu2 (using .../initramfs-tools-bin_0.98ubuntu2_amd64.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace mountall 2.15 (using .../mountall_2.16_amd64.deb) ... Unpacking replacement mountall ... Preparing to replace upstart 0.6.5-6 (using .../upstart_0.6.6-3_amd64.deb) ... Unpacking replacement upstart ... Preparing to replace ifupdown 0.6.10ubuntu2 (using .../ifupdown_0.6.10ubuntu3_amd64.deb) ... Unpacking replacement ifupdown ... Preparing to replace locales 2.11+git20100304-6 (using .../locales_2.13+git20100825-1_all.deb) ... Unpacking replacement locales ... Preparing to replace apt-transport-https 0.7.26~exp12ubuntu3 (using .../apt-transport-https_0.8.0ubuntu3_amd64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace g++-4.4 4.4.4-8ubuntu1 (using .../g++-4.4_4.4.4-13ubuntu2_amd64.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.4-8ubuntu1 (using .../libstdc++6-4.4-dev_4.4.4-13ubuntu2_amd64.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace gcc-4.4 4.4.4-8ubuntu1 (using .../gcc-4.4_4.4.4-13ubuntu2_amd64.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace cpp-4.4 4.4.4-8ubuntu1 (using .../cpp-4.4_4.4.4-13ubuntu2_amd64.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.4-8ubuntu1 (using .../gcc-4.4-base_4.4.4-13ubuntu2_amd64.deb) ... Unpacking replacement gcc-4.4-base ... Preparing to replace binutils 2.20.51.20100710-1ubuntu2 (using .../binutils_2.20.51.20100813-1ubuntu3_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace dpkg-dev 1.15.8.2ubuntu3 (using .../dpkg-dev_1.15.8.4ubuntu2_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.15.8.2ubuntu3 (using .../libdpkg-perl_1.15.8.4ubuntu2_all.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace pkg-create-dbgsym 0.43 (using .../pkg-create-dbgsym_0.44_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Setting up libc-dev-bin (2.12.1-0ubuntu3) ... Setting up linux-libc-dev (2.6.35-20.29) ... Setting up libc6-dev (2.12.1-0ubuntu3) ... Setting up libgomp1 (4.5.1-5ubuntu1) ... Setting up busybox-initramfs (1:1.15.3-1ubuntu4) ... Setting up libnih1 (1.0.2-1ubuntu2) ... Setting up libnih-dbus1 (1.0.2-1ubuntu2) ... Setting up libudev0 (161+git20100827-1) ... Setting up libglib2.0-0 (2.25.15-0ubuntu2) ... Setting up initramfs-tools-bin (0.98ubuntu2) ... Setting up locales (2.13+git20100825-1) ... Setting up apt-transport-https (0.8.0ubuntu3) ... Setting up gcc-4.4-base (4.4.4-13ubuntu2) ... Setting up cpp-4.4 (4.4.4-13ubuntu2) ... Setting up binutils (2.20.51.20100813-1ubuntu3) ... Setting up gcc-4.4 (4.4.4-13ubuntu2) ... Setting up libdpkg-perl (1.15.8.4ubuntu2) ... Setting up dpkg-dev (1.15.8.4ubuntu2) ... Setting up pkg-create-dbgsym (0.44) ... Setting up g++-4.4 (4.4.4-13ubuntu2) ... Setting up libstdc++6-4.4-dev (4.4.4-13ubuntu2) ... Setting up mountall (2.16) ... Installing new version of config file /etc/init/mountall.conf ... Setting up upstart (0.6.6-3) ... Setting up udev (161+git20100827-1) ... Installing new version of config file /etc/init/udevtrigger.conf ... Removing 'local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.6.10ubuntu3) ... Setting up initramfs-tools (0.98ubuntu2) ... Installing new version of config file /etc/initramfs-tools/initramfs.conf ... Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '844d0d53d0460e195c9286aa312aca1b7d71d44c', 'amd64', 'maverick', '--nolog', '--batch', '--archive=ubuntu', '--dist=maverick', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'libgenome_1.3.1-3build1.dsc'] Initiating build 844d0d53d0460e195c9286aa312aca1b7d71d44c with 8 processor cores. Automatic build of libgenome_1.3.1-3build1 on allspice by sbuild/amd64 1.170.5 Build started at 20100907-1146 ****************************************************************************** libgenome_1.3.1-3build1.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), autotools-dev, d-shlibs (>= 0.40), cdbs, doxygen sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing autotools-dev: missing d-shlibs: missing cdbs: missing doxygen: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev d-shlibs cdbs doxygen Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake bsdmainutils fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db po-debconf Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make doxygen-doc doxygen-gui graphviz gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl Recommended packages: texlive-extra-utils curl wget lynx libmailtools-perl libhtml-format-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs d-shlibs debhelper doxygen fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db po-debconf 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 12.9MB of archives. After this operation, 36.6MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file bsdmainutils gettext-base groff-base libexpat1 liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl libxml2 man-db m4 autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs d-shlibs doxygen Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ maverick/main libmagic1 amd64 5.03-5ubuntu1 [392kB] Get:2 http://ftpmaster.internal/ubuntu/ maverick/main file amd64 5.03-5ubuntu1 [48.0kB] Get:3 http://ftpmaster.internal/ubuntu/ maverick/main bsdmainutils amd64 8.0.11ubuntu1 [205kB] Get:4 http://ftpmaster.internal/ubuntu/ maverick/main gettext-base amd64 0.18.1.1-1ubuntu2 [99.2kB] Get:5 http://ftpmaster.internal/ubuntu/ maverick/main groff-base amd64 1.20.1-10 [1130kB] Get:6 http://ftpmaster.internal/ubuntu/ maverick/main libexpat1 amd64 2.0.1-7ubuntu1 [138kB] Get:7 http://ftpmaster.internal/ubuntu/ maverick/main liburi-perl all 1.54-1 [98.1kB] Get:8 http://ftpmaster.internal/ubuntu/ maverick/main libhtml-tagset-perl all 3.20-2 [13.5kB] Get:9 http://ftpmaster.internal/ubuntu/ maverick/main libhtml-parser-perl amd64 3.65-1 [114kB] Get:10 http://ftpmaster.internal/ubuntu/ maverick/main libhtml-tree-perl all 3.23-2 [208kB] Get:11 http://ftpmaster.internal/ubuntu/ maverick/main libwww-perl all 5.836-1 [402kB] Get:12 http://ftpmaster.internal/ubuntu/ maverick/main libxml-parser-perl amd64 2.36-1.1build3 [324kB] Get:13 http://ftpmaster.internal/ubuntu/ maverick/main libxml2 amd64 2.7.7.dfsg-4 [874kB] Get:14 http://ftpmaster.internal/ubuntu/ maverick/main man-db amd64 2.5.7-4 [1281kB] Get:15 http://ftpmaster.internal/ubuntu/ maverick/main m4 amd64 1.4.14-3 [290kB] Get:16 http://ftpmaster.internal/ubuntu/ maverick/main autoconf all 2.67-2ubuntu1 [569kB] Get:17 http://ftpmaster.internal/ubuntu/ maverick/main autotools-dev all 20100122.1 [70.7kB] Get:18 http://ftpmaster.internal/ubuntu/ maverick/main automake all 1:1.11.1-1 [608kB] Get:19 http://ftpmaster.internal/ubuntu/ maverick/main html2text amd64 1.3.2a-15 [104kB] Get:20 http://ftpmaster.internal/ubuntu/ maverick/main libcroco3 amd64 0.6.2-1 [101kB] Get:21 http://ftpmaster.internal/ubuntu/ maverick/main libunistring0 amd64 0.9.3-1 [438kB] Get:22 http://ftpmaster.internal/ubuntu/ maverick/main gettext amd64 0.18.1.1-1ubuntu2 [1317kB] Get:23 http://ftpmaster.internal/ubuntu/ maverick/main intltool-debian all 0.35.0+20060710.1 [31.6kB] Get:24 http://ftpmaster.internal/ubuntu/ maverick/main po-debconf all 1.0.16 [224kB] Get:25 http://ftpmaster.internal/ubuntu/ maverick/main debhelper all 8.0.0ubuntu1 [460kB] Get:26 http://ftpmaster.internal/ubuntu/ maverick/main fdupes amd64 1.50-PR2-3 [21.3kB] Get:27 http://ftpmaster.internal/ubuntu/ maverick/main intltool all 0.41.1-1 [103kB] Get:28 http://ftpmaster.internal/ubuntu/ maverick/main cdbs all 0.4.83ubuntu2 [1216kB] Get:29 http://ftpmaster.internal/ubuntu/ maverick/main d-shlibs all 0.44+nmu1ubuntu1 [12.2kB] Get:30 http://ftpmaster.internal/ubuntu/ maverick/main doxygen amd64 1.7.1-1 [2040kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.9MB in 0s (22.5MB/s) Selecting previously deselected package libmagic1. (Reading database ... 13460 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.03-5ubuntu1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-5ubuntu1_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.11ubuntu1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-1ubuntu2_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-10_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu1_amd64.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.54-1_all.deb) ... Selecting previously deselected package libhtml-tagset-perl. 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Setting up bsdmainutils (8.0.11ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-1ubuntu2) ... Setting up groff-base (1.20.1-10) ... Setting up libexpat1 (2.0.1-7ubuntu1) ... Setting up liburi-perl (1.54-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.65-1) ... Setting up libhtml-tree-perl (3.23-2) ... Setting up libwww-perl (5.836-1) ... Setting up libxml-parser-perl (2.36-1.1build3) ... Setting up libxml2 (2.7.7.dfsg-4) ... Setting up man-db (2.5.7-4) ... Building database of manual pages ... Setting up m4 (1.4.14-3) ... Setting up autoconf (2.67-2ubuntu1) ... Setting up autotools-dev (20100122.1) ... Setting up automake (1:1.11.1-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-1) ... Setting up gettext (0.18.1.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (8.0.0ubuntu1) ... Setting up fdupes (1.50-PR2-3) ... Setting up intltool (0.41.1-1) ... Setting up cdbs (0.4.83ubuntu2) ... Setting up d-shlibs (0.44+nmu1ubuntu1) ... Setting up doxygen (1.7.1-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.12.1-0ubuntu3 make_3.81-8 dpkg-dev_1.15.8.4ubuntu2 gcc-4.4_4.4.4-13ubuntu2 g++-4.4_4.4.4-13ubuntu2 binutils_2.20.51.20100813-1ubuntu3 libstdc++6-4.4-dev_4.4.4-13ubuntu2 libstdc++6_4.5.1-5ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Sep 7 10:43:12 2010 UTC using DSA key ID 0F932C9C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./libgenome_1.3.1-3build1.dsc dpkg-source: info: extracting libgenome in libgenome-1.3.1 dpkg-source: info: unpacking libgenome_1.3.1.orig.tar.gz dpkg-source: info: unpacking libgenome_1.3.1-3build1.debian.tar.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package libgenome dpkg-buildpackage: source version 1.3.1-3build1 dpkg-source --before-build libgenome-1.3.1 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/libgenome-1.3.1' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/libgenome-1.3.1' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean rm -f debian/stamp-autotools-files rm -f debian/libgenome1-dev.substvars debian/rules build test -x debian/rules mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/libgenome-1.3.1/./configure mkdir -p . cd . && CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" /build/buildd/libgenome-1.3.1/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/libgenome" --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --srcdir=. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for a sed that does not truncate output... /bin/sed checking for egrep... grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for f77... no checking for xlf... no checking for frt... no checking for pgf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for f90... no checking for xlf90... no checking for pgf90... no checking for epcf90... no checking for f95... no checking for fort... no checking for xlf95... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for gfortran... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc static flag works... yes checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGE_FILES value needed for large files... no checking for ANSI C header files... (cached) yes checking for OpenMP flag of C compiler... -fopenmp checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... no configure: WARNING: dot not found - will not generate graphics for doxygen documentation checking for latex... no configure: WARNING: latex not found - will not generate doxygen PostScript documentation checking for makeindex... no checking for dvips... no checking for egrep... /bin/egrep checking for pdflatex... no configure: WARNING: pdflatex not found - will not generate doxygen PDF documentation checking for makeindex... no checking for egrep... (cached) /bin/egrep checking for an ANSI C-conforming const... yes checking for inline... inline checking whether time.h and sys/time.h may both be included... yes checking whether gcc needs -traditional... no configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome-1.3.pc config.status: creating config.h config.status: executing depfiles commands touch debian/stamp-autotools /usr/bin/make -C . make[1]: Entering directory `/build/buildd/libgenome-1.3.1' /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/libgenome-1.3.1' Making all in libGenome make[3]: Entering directory `/build/buildd/libgenome-1.3.1/libGenome' /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnFilter.lo gnFilter.cpp mkdir .libs g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o gnFilter.cpp: In constructor 'genome::gnFilter::gnFilter()': gnFilter.cpp:90: warning: array subscript has type 'char' gnFilter.cpp: In constructor 'genome::gnFilter::gnFilter(gnSeqC, gnSeqC)': gnFilter.cpp:97: warning: array subscript has type 'char' gnFilter.cpp: In copy constructor 'genome::gnFilter::gnFilter(const genome::gnFilter&)': gnFilter.cpp:104: warning: array subscript has type 'char' gnFilter.cpp:104: warning: array subscript has type 'char' gnFilter.cpp: In constructor 'genome::gnFilter::gnFilter(genome::gnFilter::gnFilterType)': gnFilter.cpp:111: warning: array subscript has type 'char' gnFilter.cpp: In member function 'virtual void genome::gnFilter::Filter(gnSeqC**, gnSeqI&) const': gnFilter.cpp:162: warning: array subscript has type 'char' gnFilter.cpp: In member function 'void genome::gnFilter::ReverseFilter(gnSeqC**, gnSeqI&) const': gnFilter.cpp:176: warning: array subscript has type 'char' gnFilter.cpp:177: warning: array subscript has type 'char' gnFilter.cpp:184: warning: array subscript has type 'char' gnFilter.cpp: In member function 'virtual void genome::gnFilter::Filter(std::string&) const': gnFilter.cpp:201: warning: array subscript has type 'char' gnFilter.cpp: In member function 'void genome::gnFilter::ReverseFilter(std::string&) const': gnFilter.cpp:213: warning: array subscript has type 'char' gnFilter.cpp:214: warning: array subscript has type 'char' gnFilter.cpp:221: warning: array subscript has type 'char' g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnCompare.lo gnCompare.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o In file included from gnCompare.cpp:16: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' gnCompare.cpp: In constructor 'genome::gnCompare::gnCompare(genome::gnCompare::gnCompareType)': gnCompare.cpp:41: warning: array subscript has type 'char' gnCompare.cpp:42: warning: array subscript has type 'char' gnCompare.cpp:43: warning: array subscript has type 'char' gnCompare.cpp:44: warning: array subscript has type 'char' gnCompare.cpp: In member function 'boolean genome::gnCompare::Contains(gnSeqC, gnSeqC, boolean) const': gnCompare.cpp:65: warning: array subscript has type 'char' gnCompare.cpp: In constructor 'genome::gnCompare::gnCompare()': gnCompare.cpp:86: warning: array subscript has type 'char' gnCompare.cpp:87: warning: array subscript has type 'char' gnCompare.cpp:88: warning: array subscript has type 'char' gnCompare.cpp:89: warning: array subscript has type 'char' gnCompare.cpp: In destructor 'virtual genome::gnCompare::~gnCompare()': gnCompare.cpp:107: warning: array subscript has type 'char' gnCompare.cpp:108: warning: array subscript has type 'char' gnCompare.cpp: In member function 'void genome::gnCompare::AddArrayEntry(gnSeqC**, gnSeqC, gnSeqC)': gnCompare.cpp:114: warning: array subscript has type 'char' gnCompare.cpp:116: warning: array subscript has type 'char' gnCompare.cpp:119: warning: array subscript has type 'char' gnCompare.cpp:120: warning: array subscript has type 'char' gnCompare.cpp: In member function 'void genome::gnCompare::DelArrayEntry(gnSeqC**, gnSeqC, gnSeqC)': gnCompare.cpp:125: warning: array subscript has type 'char' gnCompare.cpp:134: warning: array subscript has type 'char' gnCompare.cpp:138: warning: array subscript has type 'char' gnCompare.cpp:139: warning: array subscript has type 'char' gnCompare.cpp:141: warning: array subscript has type 'char' gnCompare.cpp:142: warning: array subscript has type 'char' g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnTranslator.lo gnTranslator.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o In file included from ../libGenome/gnTranslator.h:26, from gnTranslator.cpp:16: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnSourceFactory.lo gnSourceFactory.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o In file included from ../libGenome/gnSequence.h:31, from ../libGenome/gnFASSource.h:25, from gnSourceFactory.cpp:19: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' gnSourceFactory.cpp: In member function 'boolean genome::gnSourceFactory::PathExists(std::string) const': gnSourceFactory.cpp:292: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result gnSourceFactory.cpp:297: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceFactory.cpp -o gnSourceFactory.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnFeature.lo gnFeature.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFeature.cpp -o gnFeature.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnSourceQualifier.lo gnSourceQualifier.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceQualifier.cpp -fPIC -DPIC -o .libs/gnSourceQualifier.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceQualifier.cpp -o gnSourceQualifier.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnFileContig.lo gnFileContig.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFileContig.cpp -fPIC -DPIC -o .libs/gnFileContig.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFileContig.cpp -o gnFileContig.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnSourceSpec.lo gnSourceSpec.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceSpec.cpp -fPIC -DPIC -o .libs/gnSourceSpec.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceSpec.cpp -o gnSourceSpec.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnFileSource.lo gnFileSource.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFileSource.cpp -fPIC -DPIC -o .libs/gnFileSource.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFileSource.cpp -o gnFileSource.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnFASSource.lo gnFASSource.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFASSource.cpp -fPIC -DPIC -o .libs/gnFASSource.o In file included from ../libGenome/gnSequence.h:31, from ../libGenome/gnFASSource.h:25, from gnFASSource.cpp:16: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFASSource.cpp -o gnFASSource.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnFragmentSpec.lo gnFragmentSpec.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFragmentSpec.cpp -fPIC -DPIC -o .libs/gnFragmentSpec.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFragmentSpec.cpp -o gnFragmentSpec.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnStringSpec.lo gnStringSpec.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnStringSpec.cpp -fPIC -DPIC -o .libs/gnStringSpec.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnStringSpec.cpp -o gnStringSpec.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnGBKSource.lo gnGBKSource.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnGBKSource.cpp -fPIC -DPIC -o .libs/gnGBKSource.o In file included from ../libGenome/gnSequence.h:31, from ../libGenome/gnGBKSource.h:27, from gnGBKSource.cpp:18: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' gnGBKSource.cpp: In member function 'virtual boolean genome::gnGBKSource::ParseStream(std::istream&)': gnGBKSource.cpp:600: warning: 'curFeature' may be used uninitialized in this function gnGBKSource.cpp:602: warning: 'curBaseLocationType' may be used uninitialized in this function gnGBKSource.cpp:603: warning: 'curLocationStart' may be used uninitialized in this function gnGBKSource.cpp:608: warning: 'curQualifierStart' may be used uninitialized in this function gnGBKSource.cpp:611: warning: 'seqChunk' may be used uninitialized in this function gnGBKSource.cpp:611: warning: 'seqChunkCount' may be used uninitialized in this function gnGBKSource.cpp:611: warning: 'gapChunk' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnGBKSource.cpp -o gnGBKSource.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnStringTools.lo gnStringTools.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnStringTools.cpp -fPIC -DPIC -o .libs/gnStringTools.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnStringTools.cpp -o gnStringTools.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnGenomeSpec.lo gnGenomeSpec.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnGenomeSpec.cpp -fPIC -DPIC -o .libs/gnGenomeSpec.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnGenomeSpec.cpp -o gnGenomeSpec.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnLocation.lo gnLocation.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnLocation.cpp -fPIC -DPIC -o .libs/gnLocation.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnLocation.cpp -o gnLocation.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnRAWSource.lo gnRAWSource.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnRAWSource.cpp -fPIC -DPIC -o .libs/gnRAWSource.o In file included from ../libGenome/gnSequence.h:31, from ../libGenome/gnRAWSource.h:27, from gnRAWSource.cpp:17: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnRAWSource.cpp -o gnRAWSource.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnBaseFeature.lo gnBaseFeature.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnBaseFeature.cpp -fPIC -DPIC -o .libs/gnBaseFeature.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnBaseFeature.cpp -o gnBaseFeature.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnSEQSource.lo gnSEQSource.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSEQSource.cpp -fPIC -DPIC -o .libs/gnSEQSource.o In file included from ../libGenome/gnSequence.h:31, from ../libGenome/gnSEQSource.h:27, from gnSEQSource.cpp:18: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' gnSEQSource.cpp: In member function 'virtual boolean genome::gnSEQSource::ParseStream(std::istream&)': gnSEQSource.cpp:360: warning: 'curFeature' may be used uninitialized in this function gnSEQSource.cpp:362: warning: 'curBaseLocationType' may be used uninitialized in this function gnSEQSource.cpp:368: warning: 'curQualifierStart' may be used uninitialized in this function gnSEQSource.cpp:363: warning: 'curLocationStart' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSEQSource.cpp -o gnSEQSource.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnSequence.lo gnSequence.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSequence.cpp -fPIC -DPIC -o .libs/gnSequence.o In file included from ../libGenome/gnSequence.h:31, from gnSequence.cpp:16: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSequence.cpp -o gnSequence.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnContigSpec.lo gnContigSpec.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnContigSpec.cpp -fPIC -DPIC -o .libs/gnContigSpec.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnContigSpec.cpp -o gnContigSpec.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnSourceHeader.lo gnSourceHeader.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceHeader.cpp -fPIC -DPIC -o .libs/gnSourceHeader.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnSourceHeader.cpp -o gnSourceHeader.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnException.lo gnException.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnException.cpp -fPIC -DPIC -o .libs/gnException.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnException.cpp -o gnException.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnFastTranslator.lo gnFastTranslator.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFastTranslator.cpp -fPIC -DPIC -o .libs/gnFastTranslator.o In file included from ../libGenome/gnTranslator.h:26, from ../libGenome/gnFastTranslator.h:27, from gnFastTranslator.cpp:16: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnFastTranslator.cpp -o gnFastTranslator.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnPosSpecificTranslator.lo gnPosSpecificTranslator.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnPosSpecificTranslator.cpp -fPIC -DPIC -o .libs/gnPosSpecificTranslator.o In file included from ../libGenome/gnTranslator.h:26, from ../libGenome/gnFastTranslator.h:27, from ../libGenome/gnPosSpecificTranslator.h:29, from gnPosSpecificTranslator.cpp:18: ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const': ../libGenome/gnCompare.h:142: warning: array subscript has type 'char' gnPosSpecificTranslator.cpp: In member function 'virtual void genome::gnPosSpecificTranslator::Filter(std::string&) const': gnPosSpecificTranslator.cpp:76: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnPosSpecificTranslator.cpp -o gnPosSpecificTranslator.o >/dev/null 2>&1 /bin/bash ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c -o gnDefs.lo gnDefs.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnDefs.cpp -fPIC -DPIC -o .libs/gnDefs.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -I.. -fopenmp -g -O2 -g -Wall -O2 -c gnDefs.cpp -o gnDefs.o >/dev/null 2>&1 /bin/bash ../libtool --mode=link --tag=CXX g++ -fopenmp -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o libGenome-1.3.la -rpath /usr/lib -version-info 1:3:1 gnFilter.lo gnCompare.lo gnTranslator.lo gnSourceFactory.lo gnFeature.lo gnSourceQualifier.lo gnFileContig.lo gnSourceSpec.lo gnFileSource.lo gnFASSource.lo gnFragmentSpec.lo gnStringSpec.lo gnGBKSource.lo gnStringTools.lo gnGenomeSpec.lo gnLocation.lo gnRAWSource.lo gnBaseFeature.lo gnSEQSource.lo gnSequence.lo gnContigSpec.lo gnSourceHeader.lo gnException.lo gnFastTranslator.lo gnPosSpecificTranslator.lo gnDefs.lo g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L//lib/../lib -L//usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L//lib -L//usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,libGenome-1.3.so.0 -o .libs/libGenome-1.3.so.0.1.3 (cd .libs && rm -f libGenome-1.3.so.0 && ln -s libGenome-1.3.so.0.1.3 libGenome-1.3.so.0) (cd .libs && rm -f libGenome-1.3.so && ln -s libGenome-1.3.so.0.1.3 libGenome-1.3.so) ar cru .libs/libGenome-1.3.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o ranlib .libs/libGenome-1.3.a creating libGenome-1.3.la (cd .libs && rm -f libGenome-1.3.la && ln -s ../libGenome-1.3.la libGenome-1.3.la) make[3]: Leaving directory `/build/buildd/libgenome-1.3.1/libGenome' make[3]: Entering directory `/build/buildd/libgenome-1.3.1' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/libgenome-1.3.1' make[2]: Leaving directory `/build/buildd/libgenome-1.3.1' make[1]: Leaving directory `/build/buildd/libgenome-1.3.1' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/libgenome-1.3.1/debian/tmp/ make[1]: Entering directory `/build/buildd/libgenome-1.3.1' Making install in libGenome make[2]: Entering directory `/build/buildd/libgenome-1.3.1/libGenome' make[3]: Entering directory `/build/buildd/libgenome-1.3.1/libGenome' test -z "/usr/lib" || mkdir -p -- "/build/buildd/libgenome-1.3.1/debian/tmp//usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c 'libGenome-1.3.la' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/libGenome-1.3.la' /usr/bin/install -c .libs/libGenome-1.3.so.0.1.3 /build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/libGenome-1.3.so.0.1.3 (cd /build/buildd/libgenome-1.3.1/debian/tmp//usr/lib && rm -f libGenome-1.3.so.0 && ln -s libGenome-1.3.so.0.1.3 libGenome-1.3.so.0) (cd /build/buildd/libgenome-1.3.1/debian/tmp//usr/lib && rm -f libGenome-1.3.so && ln -s libGenome-1.3.so.0.1.3 libGenome-1.3.so) /usr/bin/install -c .libs/libGenome-1.3.lai /build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/libGenome-1.3.la /usr/bin/install -c .libs/libGenome-1.3.a /build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/libGenome-1.3.a ranlib /build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/libGenome-1.3.a chmod 644 /build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/libGenome-1.3.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/include/libGenome-1.3/libGenome" || mkdir -p -- "/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome" /usr/bin/install -c -m 644 'gnABISource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnABISource.h' /usr/bin/install -c -m 644 'gnDataBaseSource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnDataBaseSource.h' /usr/bin/install -c -m 644 'gnLocation.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnLocation.h' /usr/bin/install -c -m 644 'gnSetup.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnSetup.h' /usr/bin/install -c -m 644 'gnBaseFeature.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnBaseFeature.h' /usr/bin/install -c -m 644 'gnDebug.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnDebug.h' /usr/bin/install -c -m 644 'gnMultiSpec.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnMultiSpec.h' /usr/bin/install -c -m 644 'gnSourceFactory.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnSourceFactory.h' /usr/bin/install -c -m 644 'gnBaseFilter.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnBaseFilter.h' /usr/bin/install -c -m 644 'gnDefs.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnDefs.h' /usr/bin/install -c -m 644 'gnSourceHeader.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnSourceHeader.h' /usr/bin/install -c -m 644 'gnPosSpecificTranslator.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnPosSpecificTranslator.h' /usr/bin/install -c -m 644 'gnBaseHeader.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnBaseHeader.h' /usr/bin/install -c -m 644 'gnFASSource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnFASSource.h' /usr/bin/install -c -m 644 'gnSourceQualifier.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnSourceQualifier.h' /usr/bin/install -c -m 644 'gnBaseQualifier.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnBaseQualifier.h' /usr/bin/install -c -m 644 'gnSourceSpec.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnSourceSpec.h' /usr/bin/install -c -m 644 'gnStringQualifier.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnStringQualifier.h' /usr/bin/install -c -m 644 'gnBaseSource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnBaseSource.h' /usr/bin/install -c -m 644 'gnFeature.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnFeature.h' /usr/bin/install -c -m 644 'gnProteinSequence.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnProteinSequence.h' /usr/bin/install -c -m 644 'gnStringHeader.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnStringHeader.h' /usr/bin/install -c -m 644 'gnBaseSpec.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnBaseSpec.h' /usr/bin/install -c -m 644 'gnFileContig.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnFileContig.h' /usr/bin/install -c -m 644 'gnRAWSource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnRAWSource.h' /usr/bin/install -c -m 644 'gnClone.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnClone.h' /usr/bin/install -c -m 644 'gnFileSource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnFileSource.h' /usr/bin/install -c -m 644 'gnRNASequence.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnRNASequence.h' /usr/bin/install -c -m 644 'gnStringSpec.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnStringSpec.h' /usr/bin/install -c -m 644 'gnCompare.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnCompare.h' /usr/bin/install -c -m 644 'gnFilter.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnFilter.h' /usr/bin/install -c -m 644 'gnSEQSource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnSEQSource.h' /usr/bin/install -c -m 644 'gnStringTools.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnStringTools.h' /usr/bin/install -c -m 644 'gnContigSpec.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnContigSpec.h' /usr/bin/install -c -m 644 'gnFragmentSpec.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnFragmentSpec.h' /usr/bin/install -c -m 644 'gnTranslator.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnTranslator.h' /usr/bin/install -c -m 644 'gnDNASequence.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnDNASequence.h' /usr/bin/install -c -m 644 'gnGBKSource.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnGBKSource.h' /usr/bin/install -c -m 644 'gnVersion.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnVersion.h' /usr/bin/install -c -m 644 'gnFastTranslator.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnFastTranslator.h' /usr/bin/install -c -m 644 'gnGenomeSpec.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnGenomeSpec.h' /usr/bin/install -c -m 644 'gnSequence.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnSequence.h' /usr/bin/install -c -m 644 'gnException.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnException.h' /usr/bin/install -c -m 644 'gnExceptionCode.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/gnExceptionCode.h' /usr/bin/install -c -m 644 'IntervalSequenceTree.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/IntervalSequenceTree.h' /usr/bin/install -c -m 644 'OmpGuard.h' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/include/libGenome-1.3/libGenome/OmpGuard.h' make[3]: Leaving directory `/build/buildd/libgenome-1.3.1/libGenome' make[2]: Leaving directory `/build/buildd/libgenome-1.3.1/libGenome' make[2]: Entering directory `/build/buildd/libgenome-1.3.1' make[3]: Entering directory `/build/buildd/libgenome-1.3.1' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/lib/pkgconfig" || mkdir -p -- "/build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/pkgconfig" /usr/bin/install -c -m 644 'libGenome-1.3.pc' '/build/buildd/libgenome-1.3.1/debian/tmp//usr/lib/pkgconfig/libGenome-1.3.pc' make[3]: Leaving directory `/build/buildd/libgenome-1.3.1' make[2]: Leaving directory `/build/buildd/libgenome-1.3.1' make[1]: Leaving directory `/build/buildd/libgenome-1.3.1' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/libgenome-1.3-0-dev.substvars dh_installdirs -plibgenome-1.3-0-dev Adding cdbs dependencies to debian/libgenome-1.3-0.substvars dh_installdirs -plibgenome-1.3-0 dh_installdocs -plibgenome-1.3-0-dev ./README ./AUTHORS dh_installexamples -plibgenome-1.3-0-dev dh_installman -plibgenome-1.3-0-dev dh_installinfo -plibgenome-1.3-0-dev dh_installmenu -plibgenome-1.3-0-dev dh_installcron -plibgenome-1.3-0-dev dh_installinit -plibgenome-1.3-0-dev Duplicate specification "O=s" for option "O" dh_installdebconf -plibgenome-1.3-0-dev dh_installemacsen -plibgenome-1.3-0-dev dh_installcatalogs -plibgenome-1.3-0-dev dh_installpam -plibgenome-1.3-0-dev dh_installlogrotate -plibgenome-1.3-0-dev dh_installlogcheck -plibgenome-1.3-0-dev dh_installchangelogs -plibgenome-1.3-0-dev dh_installudev -plibgenome-1.3-0-dev dh_lintian -plibgenome-1.3-0-dev dh_install -plibgenome-1.3-0-dev dh_link -plibgenome-1.3-0-dev dh_installmime -plibgenome-1.3-0-dev dh_installdocs -plibgenome-1.3-0 ./README ./AUTHORS dh_installexamples -plibgenome-1.3-0 dh_installman -plibgenome-1.3-0 dh_installinfo -plibgenome-1.3-0 dh_installmenu -plibgenome-1.3-0 dh_installcron -plibgenome-1.3-0 dh_installinit -plibgenome-1.3-0 Duplicate specification "O=s" for option "O" dh_installdebconf -plibgenome-1.3-0 dh_installemacsen -plibgenome-1.3-0 dh_installcatalogs -plibgenome-1.3-0 dh_installpam -plibgenome-1.3-0 dh_installlogrotate -plibgenome-1.3-0 dh_installlogcheck -plibgenome-1.3-0 dh_installchangelogs -plibgenome-1.3-0 dh_installudev -plibgenome-1.3-0 dh_lintian -plibgenome-1.3-0 dh_install -plibgenome-1.3-0 dh_link -plibgenome-1.3-0 dh_installmime -plibgenome-1.3-0 # Call d-shlibmove to comply with library packaging guide d-devlibdeps debian/libgenome1-dev.substvars \ debian/tmp/usr/lib/libGenome-1.3.so --> libc6-dev package exists. # /bin/sh debian/debug/ mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ # cp -a doc/html/* debian/tmp/usr/share/doc/html d-shlibmove --override s/libstdc\+\+6-dev// \ --commit \ --movedev "debian/tmp/usr/include/libGenome" usr/include/libGenome-1.3 \ --movedev "libGenome-1.3.pc" usr/share/pkgconfig \ debian/tmp/usr/lib/libGenome-1.3.so Library package automatic movement utility --> libc6-dev package exists. set -e install -d -m 755 debian/libgenome-1.3-0-dev/usr/lib install -d -m 755 debian/libgenome-1.3-0/usr/lib mv debian/tmp/usr/lib/libGenome-1.3.a debian/libgenome-1.3-0-dev/usr/lib mv debian/tmp/usr/lib/libGenome-1.3.la debian/libgenome-1.3-0-dev/usr/lib || true mv debian/tmp/usr/lib/libGenome-1.3.so debian/libgenome-1.3-0-dev/usr/lib mv /build/buildd/libgenome-1.3.1/debian/tmp/usr/lib/libGenome-1.3.so.0 debian/libgenome-1.3-0/usr/lib mv /build/buildd/libgenome-1.3.1/debian/tmp/usr/lib/libGenome-1.3.so.0.1.3 debian/libgenome-1.3-0/usr/lib PKGDEV=libgenome-1.3-0-dev PKGSHL=libgenome-1.3-0 install -d -m 755 debian/libgenome-1.3-0-dev/usr/include/libGenome-1.3 mv debian/tmp/usr/include/libGenome debian/libgenome-1.3-0-dev/usr/include/libGenome-1.3 install -d -m 755 debian/libgenome-1.3-0-dev/usr/share/pkgconfig mv libGenome-1.3.pc debian/libgenome-1.3-0-dev/usr/share/pkgconfig # http://lists.debian.org/debian-devel/2009/08/msg00783.html # Release goal: Getting rid of unneeded *.la / emptying dependency_libs find debian -name "*.la" -exec rm -f \{\} \; dh_strip -plibgenome-1.3-0-dev dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: libgenome-1.3-0-dev libgenome-1.3-0 dh_strip debug symbol extraction: packages to act on: libgenome-1.3-0-dev dh_strip debug symbol extraction: ignored packages: libgenome-1.3-0-dev is already stripped, ignoring dh_compress -plibgenome-1.3-0-dev dh_fixperms -plibgenome-1.3-0-dev dh_makeshlibs -plibgenome-1.3-0-dev dh_strip -plibgenome-1.3-0 dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: libgenome-1.3-0-dev libgenome-1.3-0 dh_strip debug symbol extraction: packages to act on: libgenome-1.3-0 dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `libgenome-1.3-0-dbgsym' in `../libgenome-1.3-0-dbgsym_1.3.1-3build1_amd64.ddeb'. dh_compress -plibgenome-1.3-0 dh_fixperms -plibgenome-1.3-0 dh_makeshlibs -plibgenome-1.3-0 dh_installdeb -plibgenome-1.3-0-dev dh_perl -plibgenome-1.3-0-dev dh_shlibdeps -plibgenome-1.3-0-dev dh_installdeb -plibgenome-1.3-0 dh_perl -plibgenome-1.3-0 dh_shlibdeps -plibgenome-1.3-0 dpkg-shlibdeps: warning: symbol GOMP_critical_start used by debian/libgenome-1.3-0/usr/lib/libGenome-1.3.so.0.1.3 found in none of the libraries. dpkg-shlibdeps: warning: symbol GOMP_critical_end used by debian/libgenome-1.3-0/usr/lib/libGenome-1.3.so.0.1.3 found in none of the libraries. dh_gencontrol -plibgenome-1.3-0-dev # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libgenome-1.3-0-dev/usr/share/doc ] || \ [ -h debian/libgenome-1.3-0-dev/usr/share/doc/libgenome-1.3-0-dev ] || \ [ ! -d debian/libgenome-1.3-0-dev/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libgenome-1.3-0-dev/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libgenome-1.3-0-dev/usr/share/doc/libgenome-1.3-0-dev; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libgenome-1.3-0-dev/usr/share/doc/libgenome-1.3-0-dev/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libgenome-1.3-0-dev to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency libgenome-1.3-0... symlinking ./AUTHORS in libgenome-1.3-0-dev to file in libgenome-1.3-0 symlinking ./README in libgenome-1.3-0-dev to file in libgenome-1.3-0 symlinking ./changelog.Debian.gz in libgenome-1.3-0-dev to file in libgenome-1.3-0 # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libgenome-1.3-0-dev/usr/share/gnome/help ]; then \ cd debian/libgenome-1.3-0-dev && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libgenome-1.3-0-dev dh_md5sums -plibgenome-1.3-0-dev dh_builddeb -plibgenome-1.3-0-dev INFO: pkgstriptranslations version 75 pkgstriptranslations: processing control file: ./debian/libgenome-1.3-0-dev/DEBIAN/control, package libgenome-1.3-0-dev, directory ./debian/libgenome-1.3-0-dev pkgstriptranslations: libgenome-1.3-0-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/libgenome-1.3-0-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warnings about the control file(s) dpkg-deb: building package `libgenome-1.3-0-dev' in `../libgenome-1.3-0-dev_1.3.1-3build1_amd64.deb'. dh_gencontrol -plibgenome-1.3-0 # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libgenome-1.3-0/usr/share/doc ] || \ [ -h debian/libgenome-1.3-0/usr/share/doc/libgenome-1.3-0 ] || \ [ ! -d debian/libgenome-1.3-0/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libgenome-1.3-0/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libgenome-1.3-0/usr/share/doc/libgenome-1.3-0; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libgenome-1.3-0/usr/share/doc/libgenome-1.3-0/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libgenome-1.3-0 to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libgenome-1.3-0/usr/share/gnome/help ]; then \ cd debian/libgenome-1.3-0 && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libgenome-1.3-0 dh_md5sums -plibgenome-1.3-0 dh_builddeb -plibgenome-1.3-0 INFO: pkgstriptranslations version 75 pkgstriptranslations: processing control file: ./debian/libgenome-1.3-0/DEBIAN/control, package libgenome-1.3-0, directory ./debian/libgenome-1.3-0 pkgstriptranslations: libgenome-1.3-0 does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libgenome-1.3-0-dev/DEBIAN/control, package libgenome-1.3-0-dev, directory ./debian/libgenome-1.3-0-dev pkgstriptranslations: libgenome-1.3-0-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/libgenome-1.3-0/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warnings about the control file(s) dpkg-deb: building package `libgenome-1.3-0' in `../libgenome-1.3-0_1.3.1-3build1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../libgenome_1.3.1-3build1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build libgenome-1.3.1 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20100907-1148 Publishing debug debs. chroot-autobuild/build/buildd/libgenome-1.3-0-dev_1.3.1-3build1_amd64.deb: new debian package, version 2.0. size 290194 bytes: control archive= 2256 bytes. 1178 bytes, 28 lines control 4209 bytes, 50 lines md5sums Package: libgenome-1.3-0-dev Source: libgenome Version: 1.3.1-3build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1512 Depends: libgenome-1.3-0 (= 1.3.1-3build1), libc6-dev Conflicts: libgenome-1.3-dev Provides: libgenome-1.3-dev Section: libdevel Priority: optional Homepage: http://asap.ahabs.wisc.edu/software/software-development-libraries/libgenome.html Description: toolkit for developing bioinformatic related software libGenome is a freely available toolkit for developing bioinformatic related software in C++. It is intended to take the hassle out of performing common tasks on genetic sequence and annotation data. . Among other things, libGenome can help you: . * Read and write Multi-FastA format files * Read and write GenBank flat file database entries * Append, chop, truncate, reverse, complement, translate, and otherwise mangle sequence data * Access annotation in GenBank flat files . This is the development package containing the statically linked library and the header files. chroot-autobuild/build/buildd/libgenome-1.3-0_1.3.1-3build1_amd64.deb: new debian package, version 2.0. size 149426 bytes: control archive= 1132 bytes. 1074 bytes, 25 lines control 366 bytes, 5 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 32 bytes, 1 lines shlibs Package: libgenome-1.3-0 Source: libgenome Version: 1.3.1-3build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 440 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Section: libs Priority: optional Homepage: http://asap.ahabs.wisc.edu/software/software-development-libraries/libgenome.html Description: toolkit for developing bioinformatic related software libGenome is a freely available toolkit for developing bioinformatic related software in C++. It is intended to take the hassle out of performing common tasks on genetic sequence and annotation data. . Among other things, libGenome can help you: . * Read and write Multi-FastA format files * Read and write GenBank flat file database entries * Append, chop, truncate, reverse, complement, translate, and otherwise mangle sequence data * Access annotation in GenBank flat files . This package contains the dynamic library. chroot-autobuild/build/buildd/libgenome-1.3-0-dev_1.3.1-3build1_amd64.deb: drwxr-xr-x root/root 0 2010-09-07 11:47 ./ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/share/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/share/doc/libgenome-1.3-0-dev/ -rw-r--r-- root/root 1277 2008-11-17 06:37 ./usr/share/doc/libgenome-1.3-0-dev/copyright -rw-r--r-- root/root 205 2008-11-17 06:37 ./usr/share/doc/libgenome-1.3-0-dev/README.Debian drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/share/pkgconfig/ -rw-r--r-- root/root 272 2010-09-07 11:47 ./usr/share/pkgconfig/libGenome-1.3.pc drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/include/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/include/libGenome-1.3/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/ -rw-r--r-- root/root 834 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnClone.h -rw-r--r-- root/root 2152 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnStringTools.h -rw-r--r-- root/root 1067 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnVersion.h -rw-r--r-- root/root 3968 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnRNASequence.h -rw-r--r-- root/root 5898 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnBaseSource.h -rw-r--r-- root/root 1939 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnBaseFilter.h -rw-r--r-- root/root 13275 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnMultiSpec.h -rw-r--r-- root/root 1559 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnDebug.h -rw-r--r-- root/root 3003 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnSourceSpec.h -rw-r--r-- root/root 4699 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnFragmentSpec.h -rw-r--r-- root/root 4168 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnProteinSequence.h -rw-r--r-- root/root 24872 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnSequence.h -rw-r--r-- root/root 5438 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnTranslator.h -rw-r--r-- root/root 3967 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnDNASequence.h -rw-r--r-- root/root 2969 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnExceptionCode.h -rw-r--r-- root/root 3744 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnSourceHeader.h -rw-r--r-- root/root 4847 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnFASSource.h -rw-r--r-- root/root 5851 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnCompare.h -rw-r--r-- root/root 3762 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnSourceQualifier.h -rw-r--r-- root/root 2246 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnFileSource.h -rw-r--r-- root/root 1815 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnDataBaseSource.h -rw-r--r-- root/root 11124 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnBaseFeature.h -rw-r--r-- root/root 1827 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnFeature.h -rw-r--r-- root/root 2949 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnStringSpec.h -rw-r--r-- root/root 1943 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnBaseHeader.h -rw-r--r-- root/root 2760 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnStringHeader.h -rw-r--r-- root/root 2346 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnPosSpecificTranslator.h -rw-r--r-- root/root 22112 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/IntervalSequenceTree.h -rw-r--r-- root/root 5298 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnFileContig.h -rw-r--r-- root/root 3717 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnRAWSource.h -rw-r--r-- root/root 4548 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnContigSpec.h -rw-r--r-- root/root 4121 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnSEQSource.h -rw-r--r-- root/root 1692 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnException.h -rw-r--r-- root/root 11315 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnLocation.h -rw-r--r-- root/root 3924 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnGenomeSpec.h -rw-r--r-- root/root 5721 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnFilter.h -rw-r--r-- root/root 1796 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnBaseQualifier.h -rw-r--r-- root/root 4693 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnBaseSpec.h -rw-r--r-- root/root 2094 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnSetup.h -rw-r--r-- root/root 3139 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnFastTranslator.h -rw-r--r-- root/root 2945 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnStringQualifier.h -rw-r--r-- root/root 4442 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnGBKSource.h -rw-r--r-- root/root 1939 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/OmpGuard.h -rw-r--r-- root/root 2621 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnABISource.h -rw-r--r-- root/root 6166 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnDefs.h -rw-r--r-- root/root 7602 2010-09-07 11:47 ./usr/include/libGenome-1.3/libGenome/gnSourceFactory.h drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/lib/ -rw-r--r-- root/root 1152176 2010-09-07 11:47 ./usr/lib/libGenome-1.3.a lrwxrwxrwx root/root 0 2010-09-07 11:47 ./usr/share/doc/libgenome-1.3-0-dev/AUTHORS -> ../libgenome-1.3-0/AUTHORS lrwxrwxrwx root/root 0 2010-09-07 11:47 ./usr/share/doc/libgenome-1.3-0-dev/README -> ../libgenome-1.3-0/README lrwxrwxrwx root/root 0 2010-09-07 11:47 ./usr/share/doc/libgenome-1.3-0-dev/changelog.Debian.gz -> ../libgenome-1.3-0/changelog.Debian.gz lrwxrwxrwx root/root 0 2010-09-07 11:47 ./usr/lib/libGenome-1.3.so -> libGenome-1.3.so.0.1.3 chroot-autobuild/build/buildd/libgenome-1.3-0_1.3.1-3build1_amd64.deb: drwxr-xr-x root/root 0 2010-09-07 11:47 ./ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/share/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-09-07 11:47 ./usr/share/doc/libgenome-1.3-0/ -rw-r--r-- root/root 198 2007-07-19 06:50 ./usr/share/doc/libgenome-1.3-0/AUTHORS -rw-r--r-- root/root 1277 2008-11-17 06:37 ./usr/share/doc/libgenome-1.3-0/copyright -rw-r--r-- root/root 31 2007-07-19 06:50 ./usr/share/doc/libgenome-1.3-0/README -rw-r--r-- root/root 1207 2010-09-07 11:40 ./usr/share/doc/libgenome-1.3-0/changelog.Debian.gz drwxr-xr-x root/root 0 2010-09-07 11:48 ./usr/lib/ -rw-r--r-- root/root 387936 2010-09-07 11:47 ./usr/lib/libGenome-1.3.so.0.1.3 lrwxrwxrwx root/root 0 2010-09-07 11:48 ./usr/lib/libGenome-1.3.so.0 -> libGenome-1.3.so.0.1.3 libgenome_1.3.1-3build1_amd64.changes: Format: 1.8 Date: Tue, 07 Sep 2010 12:38:55 +0200 Source: libgenome Binary: libgenome-1.3-0-dev libgenome-1.3-0 Architecture: amd64 Version: 1.3.1-3build1 Distribution: maverick Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Matthias Klose Description: libgenome-1.3-0 - toolkit for developing bioinformatic related software libgenome-1.3-0-dev - toolkit for developing bioinformatic related software Launchpad-Bugs-Fixed: 621694 Changes: libgenome (1.3.1-3build1) maverick; urgency=low . * Rebuild to drop dependency on libstdc++6-4.1-dev. LP: #621694. Checksums-Sha1: 75ab7f6b8b6dfdb6586092b88a3894f2d6d899d9 290194 libgenome-1.3-0-dev_1.3.1-3build1_amd64.deb 853ae1cef96f59d4a0b27d4dd9c5569396979643 149426 libgenome-1.3-0_1.3.1-3build1_amd64.deb Checksums-Sha256: 934bbd273cb92811a12a9ea35330e0f86282e767993aca1139d2652807c0849f 290194 libgenome-1.3-0-dev_1.3.1-3build1_amd64.deb 6f4a4ae01ea9f47c4b32ccb20ddbafaeaf8128e4b58c07b79a026b5fc99baaf3 149426 libgenome-1.3-0_1.3.1-3build1_amd64.deb Files: c7c968de6238a0c181a36f0f814c6e36 290194 libdevel optional libgenome-1.3-0-dev_1.3.1-3build1_amd64.deb 96611a9780740805a6af5bda1fc2cb57 149426 libs optional libgenome-1.3-0_1.3.1-3build1_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/libgenome-1.3.1 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge intltool-debian groff-base d-shlibs m4 gettext file libhtml-parser-perl intltool cdbs libwww-perl liburi-perl html2text gettext-base doxygen debhelper libhtml-tree-perl autotools-dev po-debconf libunistring0 libxml-parser-perl libcroco3 libmagic1 libhtml-tagset-perl libxml2 libexpat1 bsdmainutils fdupes automake man-db autoconf (Reading database ... 15274 files and directories currently installed.) Removing d-shlibs ... Removing cdbs ... Removing doxygen ... Removing debhelper ... Removing po-debconf ... Removing fdupes ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing intltool ... Removing html2text ... Purging configuration files for html2text ... Removing libxml-parser-perl ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing automake ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing libwww-perl ... Removing gettext-base ... Removing libhtml-tree-perl ... Removing autotools-dev ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libhtml-tagset-perl ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20100907-1148 Build needed 00:00:48, 29108k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '844d0d53d0460e195c9286aa312aca1b7d71d44c'] Scanning for processes to kill in build /home/buildd/build-844d0d53d0460e195c9286aa312aca1b7d71d44c/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '844d0d53d0460e195c9286aa312aca1b7d71d44c'] Unmounting chroot for build 844d0d53d0460e195c9286aa312aca1b7d71d44c... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '844d0d53d0460e195c9286aa312aca1b7d71d44c'] Removing build 844d0d53d0460e195c9286aa312aca1b7d71d44c